Wall clock time and date at job start Sun Mar 7 2021 09:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86294 * 109.47475 * 2 1 4 4 C 1.50700 * 109.46627 * 239.99727 * 2 1 3 5 5 C 1.32691 * 124.69011 * 300.32107 * 4 2 1 6 6 C 1.44501 * 113.10366 * 180.14864 * 5 4 2 7 7 C 1.47048 * 123.49844 * 179.80721 * 6 5 4 8 8 O 1.21654 * 120.00343 * 179.72481 * 7 6 5 9 9 N 1.34778 * 119.99320 * 359.72368 * 7 6 5 10 10 C 1.46504 * 119.99685 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85081 * 336.19784 * 10 9 7 12 12 C 1.53784 * 113.61467 * 107.50439 * 10 9 7 13 13 C 1.53781 * 87.08222 * 139.98020 * 12 10 9 14 14 H 1.08995 * 113.68756 * 89.12845 * 13 12 10 15 15 C 1.50704 * 113.61258 * 220.01829 * 13 12 10 16 16 N 1.30175 * 126.79790 * 192.45173 * 15 13 12 17 17 O 1.20923 * 111.59718 * 180.02562 * 16 15 13 18 18 C 1.34035 * 111.57389 * 0.02562 * 17 16 15 19 19 C 1.35455 * 106.44342 * 359.97438 * 18 17 16 20 20 C 1.53781 * 113.61374 * 205.00118 * 10 9 7 21 21 C 1.36224 * 113.01598 * 359.53455 * 6 5 4 22 22 Cl 1.73601 * 124.60927 * 180.22769 * 21 6 5 23 23 S 1.70455 * 110.78850 * 0.24893 * 21 6 5 24 24 H 0.96709 * 114.00174 * 59.99633 * 1 2 3 25 25 H 1.08993 * 109.47085 * 120.00340 * 2 1 3 26 26 H 1.48509 * 109.99876 * 298.68035 * 3 2 1 27 27 H 1.48494 * 110.00161 * 60.00000 * 3 2 1 28 28 H 1.08001 * 123.45016 * 359.96111 * 5 4 2 29 29 H 0.96997 * 120.00283 * 0.02562 * 9 7 6 30 30 H 1.09000 * 113.61126 * 25.43129 * 12 10 9 31 31 H 1.08995 * 113.61342 * 254.53670 * 12 10 9 32 32 H 1.07999 * 126.77572 * 180.26208 * 18 17 16 33 33 H 1.08003 * 128.00222 * 179.97438 * 19 18 17 34 34 H 1.08999 * 113.61709 * 105.47542 * 20 10 9 35 35 H 1.08996 * 113.61453 * 334.56584 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.6636 -1.9739 -1.5351 6 6 2.2762 -2.4009 -2.7722 7 6 2.1330 -3.7568 -3.3231 8 8 2.6732 -4.0466 -4.3739 9 7 1.4032 -4.6783 -2.6638 10 6 1.2599 -6.0289 -3.2129 11 1 1.4102 -6.0653 -4.2919 12 6 2.0560 -7.0950 -2.4418 13 6 0.8455 -8.0240 -2.6325 14 1 0.8821 -8.6078 -3.5522 15 6 0.5303 -8.8615 -1.4199 16 7 -0.2781 -9.8803 -1.3646 17 8 -0.3263 -10.3504 -0.2515 18 6 0.4665 -9.6842 0.5995 19 6 1.0532 -8.6956 -0.1169 20 6 -0.0130 -6.7529 -2.7435 21 6 2.9955 -1.4155 -3.3782 22 17 3.8493 -1.5985 -4.8787 23 16 2.9440 0.0214 -2.4628 24 1 -0.3934 0.4418 -0.7651 25 1 1.7923 -0.5139 0.8899 26 1 1.5880 2.4585 -1.2243 27 1 1.5616 2.4678 1.2084 28 1 1.0529 -2.6181 -0.9198 29 1 0.9722 -4.4470 -1.8262 30 1 2.2444 -6.8314 -1.4011 31 1 2.9519 -7.4326 -2.9628 32 1 0.6125 -9.8968 1.6483 33 1 1.7569 -7.9524 0.2277 34 1 -0.7874 -6.8146 -3.5081 35 1 -0.3902 -6.3959 -1.7853 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_13431040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:49:24 Heat of formation + Delta-G solvation = 58.734404 kcal Electronic energy + Delta-G solvation = -23963.382383 eV Core-core repulsion = 20085.378035 eV Total energy + Delta-G solvation = -3878.004348 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.032 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88862 -41.36927 -39.93763 -38.89535 -37.90965 -37.06209 -35.32599 -33.84014 -32.60202 -31.73898 -27.64326 -26.96765 -26.93066 -25.39370 -23.97882 -22.50217 -21.98244 -21.12670 -20.51576 -19.45205 -18.86968 -18.44887 -18.15206 -17.82856 -17.22818 -16.65385 -16.36797 -16.13978 -15.95783 -15.84998 -15.49427 -14.83575 -14.60081 -14.46066 -14.28064 -14.04495 -13.88548 -13.66892 -13.49897 -13.07982 -12.80790 -12.59832 -12.51857 -12.38088 -12.08258 -11.95830 -11.91680 -11.76504 -11.03934 -10.94508 -10.72828 -10.58043 -10.14415 -9.92794 -9.73205 -5.25412 -0.63541 -0.23863 0.39599 0.54922 0.64121 1.00283 1.06402 1.22826 1.37520 1.73883 2.11576 2.22421 2.32650 3.02784 3.08355 3.23517 3.30872 3.46354 3.58557 3.77363 3.81028 3.82675 3.92324 4.17465 4.23459 4.31409 4.36407 4.52354 4.55118 4.62002 4.62633 4.66481 4.82327 4.85205 4.87339 4.99257 5.13937 5.44949 6.10811 6.40956 7.16805 7.31854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.031 4.031 3 Si 0.646 3.354 4 C -0.234 4.234 5 C -0.071 4.071 6 C -0.161 4.161 7 C 0.577 3.423 8 O -0.517 6.517 9 N -0.713 5.713 10 C 0.128 3.872 11 H 0.123 0.877 12 C -0.139 4.139 13 C -0.034 4.034 14 H 0.113 0.887 15 C 0.029 3.971 16 N -0.362 5.362 17 O 0.100 5.900 18 C -0.055 4.055 19 C -0.233 4.233 20 C -0.132 4.132 21 C -0.114 4.114 22 Cl 0.027 6.973 23 S 0.239 5.761 24 H 0.380 0.620 25 H 0.132 0.868 26 H -0.236 1.236 27 H -0.230 1.230 28 H 0.157 0.843 29 H 0.401 0.599 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 2.941 5.580 6.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.143 4.143 3 Si 0.544 3.456 4 C -0.351 4.351 5 C -0.100 4.100 6 C -0.179 4.179 7 C 0.363 3.637 8 O -0.393 6.393 9 N -0.365 5.365 10 C 0.023 3.977 11 H 0.140 0.860 12 C -0.179 4.179 13 C -0.054 4.054 14 H 0.131 0.869 15 C -0.130 4.130 16 N -0.065 5.065 17 O 0.033 5.967 18 C -0.137 4.137 19 C -0.255 4.255 20 C -0.171 4.171 21 C -0.261 4.261 22 Cl 0.056 6.944 23 S 0.503 5.497 24 H 0.228 0.772 25 H 0.149 0.851 26 H -0.160 1.160 27 H -0.153 1.153 28 H 0.174 0.826 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.188 0.812 34 H 0.102 0.898 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.528 4.056 4.121 5.981 hybrid contribution -1.127 -1.094 0.495 1.646 sum 0.402 2.962 4.616 5.499 Atomic orbital electron populations 1.86639 1.16924 1.79876 1.49404 1.24394 0.83995 1.10080 0.95874 0.95258 0.91605 0.75098 0.83595 1.24754 1.07955 0.99266 1.03149 1.20986 0.99309 0.95063 0.94691 1.20229 1.04679 0.95475 0.97537 1.17439 0.78805 0.83420 0.84068 1.90882 1.46328 1.80131 1.21936 1.45772 1.52892 1.11524 1.26299 1.22468 0.95761 0.79540 0.99969 0.85951 1.23553 0.97414 0.94934 1.01964 1.20689 0.97716 0.92811 0.94173 0.86883 1.23387 0.97020 0.95918 0.96694 1.73881 1.20066 1.12096 1.00487 1.84871 1.51484 1.46683 1.13665 1.26098 0.94471 0.94233 0.98882 1.22701 1.06369 1.03584 0.92820 1.23402 0.97018 0.93949 1.02780 1.25560 1.02926 1.00837 0.96791 1.98445 1.73243 1.97040 1.25633 1.83381 1.46559 1.08427 1.11296 0.77203 0.85055 1.15989 1.15257 0.82582 0.76391 0.89032 0.89915 0.76607 0.81171 0.89765 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.82 12.84 -35.23 -0.45 0.36 16 2 C -0.03 0.09 2.95 36.01 0.11 0.19 16 3 Si 0.65 -1.83 30.91 -169.99 -5.25 -7.08 16 4 C -0.23 0.49 5.68 -36.20 -0.21 0.28 16 5 C -0.07 0.12 9.71 -39.00 -0.38 -0.26 16 6 C -0.16 -0.12 5.98 -104.58 -0.63 -0.75 16 7 C 0.58 1.17 7.79 -12.69 -0.10 1.07 16 8 O -0.52 -2.82 14.51 5.23 0.08 -2.74 16 9 N -0.71 0.71 5.33 -54.20 -0.29 0.42 16 10 C 0.13 -0.12 4.24 -67.11 -0.28 -0.41 16 11 H 0.12 0.07 7.46 -51.93 -0.39 -0.32 16 12 C -0.14 0.21 7.27 -25.92 -0.19 0.02 16 13 C -0.03 0.02 4.29 -90.96 -0.39 -0.37 16 14 H 0.11 -0.05 8.14 -51.93 -0.42 -0.47 16 15 C 0.03 0.03 6.70 -82.10 -0.55 -0.52 16 16 N -0.36 -1.21 12.07 33.42 0.40 -0.80 16 17 O 0.10 0.18 11.20 17.19 0.19 0.38 16 18 C -0.06 0.09 12.30 29.74 0.37 0.45 16 19 C -0.23 0.26 10.28 -39.38 -0.40 -0.14 16 20 C -0.13 0.22 7.38 -25.92 -0.19 0.02 16 21 C -0.11 -0.15 6.87 30.01 0.21 0.06 16 22 Cl 0.03 0.08 27.20 -51.86 -1.41 -1.33 16 23 S 0.24 -0.33 20.17 -107.50 -2.17 -2.50 16 24 H 0.38 -1.57 8.70 45.56 0.40 -1.17 16 25 H 0.13 -0.53 7.96 -51.93 -0.41 -0.94 16 26 H -0.24 0.25 7.11 56.52 0.40 0.65 16 27 H -0.23 0.00 7.11 56.52 0.40 0.40 16 28 H 0.16 -0.59 7.10 -52.49 -0.37 -0.96 16 29 H 0.40 -1.37 7.27 -40.82 -0.30 -1.67 16 30 H 0.09 -0.23 6.62 -51.93 -0.34 -0.57 16 31 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.22 -1.24 8.06 -52.49 -0.42 -1.66 16 33 H 0.17 -0.59 7.12 -52.48 -0.37 -0.97 16 34 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.09 -0.20 8.07 -51.93 -0.42 -0.62 16 LS Contribution 332.66 15.07 5.01 5.01 Total: 0.00 -8.33 332.66 -9.63 -17.95 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: -3.10 Total: -9.34 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.64 Total: -0.33 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: 0.11 Total: -0.38 kcal Atomic # 8 Polarization: -1.82 SS G_CDS: -0.18 Total: -2.00 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.25 Total: -7.08 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.17 Total: -2.50 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.41 Total: -1.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -8.33 -9.63 -17.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_13431040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.688 kcal (2) G-P(sol) polarization free energy of solvation -8.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds