Wall clock time and date at job start Sun Mar 7 2021 09:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38268 * 119.94292 * 244.72777 * 4 2 1 6 6 C 1.38149 * 120.05340 * 179.72585 * 5 4 2 7 7 C 1.38729 * 119.94278 * 0.52241 * 6 5 4 8 8 O 1.35904 * 120.05660 * 179.72534 * 7 6 5 9 9 C 1.42901 * 116.99839 * 0.02562 * 8 7 6 10 10 C 1.50700 * 109.47339 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99567 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99564 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.85038 * 23.80774 * 13 12 10 15 15 C 1.53782 * 113.61019 * 155.00375 * 13 12 10 16 16 C 1.53784 * 87.08217 * 139.98434 * 15 13 12 17 17 H 1.08998 * 113.61772 * 89.11360 * 16 15 13 18 18 C 1.50695 * 113.61598 * 219.93599 * 16 15 13 19 19 N 1.30179 * 126.80167 * 265.02371 * 18 16 15 20 20 O 1.20929 * 111.60390 * 179.97438 * 19 18 16 21 21 C 1.34046 * 111.56671 * 359.97438 * 20 19 18 22 22 C 1.35453 * 106.44516 * 359.74634 * 21 20 19 23 23 C 1.53781 * 113.61517 * 252.49788 * 13 12 10 24 24 C 1.38735 * 119.89319 * 359.75442 * 7 6 5 25 25 C 1.38147 * 119.93770 * 359.97438 * 24 7 6 26 26 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 27 27 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 28 28 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 29 29 H 1.48497 * 109.99780 * 181.31712 * 3 2 1 30 30 H 1.07997 * 119.97326 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.02746 * 180.25437 * 6 5 4 32 32 H 1.09001 * 109.47109 * 299.99905 * 9 8 7 33 33 H 1.09001 * 109.47207 * 59.99920 * 9 8 7 34 34 H 0.96993 * 120.00448 * 0.02562 * 12 10 9 35 35 H 1.09006 * 113.61206 * 254.52639 * 15 13 12 36 36 H 1.08993 * 113.61554 * 25.43461 * 15 13 12 37 37 H 1.08000 * 126.77588 * 180.02562 * 21 20 19 38 38 H 1.08003 * 128.00810 * 180.22985 * 22 21 20 39 39 H 1.08997 * 113.61832 * 334.57364 * 23 13 12 40 40 H 1.09003 * 113.61312 * 105.47363 * 23 13 12 41 41 H 1.07997 * 120.03417 * 180.02562 * 24 7 6 42 42 H 1.08000 * 119.96695 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6436 -0.0121 2.1880 6 6 3.1003 -0.6598 3.3196 7 6 2.8530 -2.0142 3.4896 8 8 3.3060 -2.6549 4.5993 9 6 4.0295 -1.8716 5.5506 10 6 4.4483 -2.7446 6.7054 11 8 4.1563 -3.9218 6.7127 12 7 5.1482 -2.2174 7.7295 13 6 5.5548 -3.0660 8.8523 14 1 5.6149 -4.1211 8.5854 15 6 6.7956 -2.5476 9.5984 16 6 6.0925 -2.9695 10.8994 17 1 6.2990 -3.9986 11.1935 18 6 6.2760 -1.9899 12.0298 19 7 7.1775 -2.0411 12.9675 20 8 7.0745 -1.1125 13.7353 21 6 6.0624 -0.3020 13.3954 22 6 5.5076 -0.8293 12.2778 23 6 4.7639 -2.7994 10.1440 24 6 2.1430 -2.7139 2.5246 25 6 1.6837 -2.0603 1.3975 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 1.5614 2.4679 1.2084 29 1 3.5345 1.7703 -0.0321 30 1 2.8397 1.0413 2.0532 31 1 3.6530 -0.1131 4.0693 32 1 4.9143 -1.4485 5.0750 33 1 3.3934 -1.0658 5.9168 34 1 5.3820 -1.2761 7.7235 35 1 7.7012 -3.1163 9.3874 36 1 6.9403 -1.4710 9.5097 37 1 5.7534 0.5967 13.9085 38 1 4.6703 -0.4521 11.7094 39 1 4.3531 -1.7916 10.2044 40 1 4.0293 -3.5714 10.3733 41 1 1.9489 -3.7682 2.6548 42 1 1.1313 -2.6046 0.6458 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_2989410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:49:50 Heat of formation + Delta-G solvation = 22.890685 kcal Electronic energy + Delta-G solvation = -26452.488665 eV Core-core repulsion = 22369.357751 eV Total energy + Delta-G solvation = -4083.130914 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.91136 -41.72747 -41.06102 -39.75214 -38.83329 -37.19108 -35.44631 -34.02202 -32.61754 -32.52926 -31.93235 -29.88202 -26.91892 -26.84323 -26.11222 -24.30802 -23.95706 -22.67709 -22.10405 -21.67426 -20.80207 -19.63420 -18.82331 -18.51784 -18.41828 -18.25172 -17.60584 -17.49390 -16.99523 -16.77716 -16.37053 -15.92556 -15.78800 -15.56590 -15.46867 -15.10404 -14.54106 -14.39297 -14.17432 -13.94123 -13.90088 -13.77909 -13.59956 -13.46894 -13.42006 -12.87013 -12.51762 -12.42814 -12.22186 -12.04477 -11.96604 -11.88045 -11.79179 -11.08451 -10.89472 -10.58191 -10.27658 -10.23299 -10.18223 -9.34438 -4.91522 0.11526 0.16878 0.60329 1.24900 1.32863 1.35333 1.39242 1.66383 1.97252 2.43446 2.49537 2.51754 3.09897 3.26500 3.38382 3.47662 3.50992 3.59417 3.64879 3.73978 3.84256 3.90793 3.96818 3.97787 4.00133 4.13954 4.27607 4.30807 4.40522 4.43905 4.54600 4.59381 4.62248 4.70621 4.73275 4.80958 4.84918 4.92108 5.03131 5.07987 5.08620 5.14832 5.36621 5.40775 5.55890 6.14141 6.38228 6.93180 7.04378 7.33790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.078 4.078 3 Si 0.773 3.227 4 C -0.129 4.129 5 C -0.098 4.098 6 C -0.201 4.201 7 C 0.122 3.878 8 O -0.315 6.315 9 C 0.034 3.966 10 C 0.516 3.484 11 O -0.570 6.570 12 N -0.697 5.697 13 C 0.124 3.876 14 H 0.100 0.900 15 C -0.119 4.119 16 C -0.039 4.039 17 H 0.102 0.898 18 C 0.019 3.981 19 N -0.405 5.405 20 O 0.078 5.922 21 C -0.047 4.047 22 C -0.239 4.239 23 C -0.130 4.130 24 C -0.160 4.160 25 C -0.056 4.056 26 H 0.402 0.598 27 H 0.091 0.909 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.126 0.874 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.422 0.578 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.196 0.804 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 9.489 -2.888 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.188 4.188 3 Si 0.679 3.321 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.220 4.220 7 C 0.077 3.923 8 O -0.228 6.228 9 C -0.044 4.044 10 C 0.302 3.698 11 O -0.448 6.448 12 N -0.350 5.350 13 C 0.019 3.981 14 H 0.118 0.882 15 C -0.157 4.157 16 C -0.059 4.059 17 H 0.120 0.880 18 C -0.139 4.139 19 N -0.112 5.112 20 O 0.015 5.985 21 C -0.127 4.127 22 C -0.260 4.260 23 C -0.169 4.169 24 C -0.179 4.179 25 C -0.074 4.074 26 H 0.254 0.746 27 H 0.109 0.891 28 H -0.221 1.221 29 H -0.214 1.214 30 H 0.143 0.857 31 H 0.179 0.821 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.261 0.739 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.272 0.728 38 H 0.213 0.787 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.155 0.845 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.574 7.882 -1.567 8.057 hybrid contribution -0.384 0.099 0.211 0.449 sum 0.191 7.980 -1.356 8.097 Atomic orbital electron populations 1.86448 1.17394 1.82425 1.51319 1.24820 0.85761 1.11160 0.97010 0.94287 0.77384 0.75478 0.84927 1.19678 1.01345 0.94769 0.97182 1.20894 0.97836 0.99075 0.93763 1.21401 1.06419 0.93334 1.00815 1.19155 0.94877 0.91462 0.86815 1.86135 1.69192 1.38103 1.29383 1.22773 0.99371 0.93775 0.88457 1.20488 0.77768 0.87886 0.83635 1.90771 1.55695 1.18725 1.79601 1.45615 1.55497 1.14205 1.19709 1.22388 0.95442 0.96137 0.84108 0.88151 1.23340 0.97181 1.03207 0.92019 1.20688 0.99024 0.96882 0.89288 0.87955 1.23743 0.94198 0.98566 0.97401 1.73885 1.23842 1.08653 1.04817 1.84823 1.43800 1.27201 1.42707 1.26907 0.89135 0.98978 0.97727 1.23050 1.05507 0.96694 1.00786 1.23525 0.95624 1.04312 0.93433 1.20734 1.01671 1.01412 0.94072 1.21019 0.96256 0.93646 0.96499 0.74644 0.89073 1.22114 1.21428 0.85659 0.82109 0.85803 0.85767 0.73939 0.90006 0.87520 0.72793 0.78652 0.87102 0.90822 0.84522 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.18 12.81 -148.98 -1.91 -1.73 16 2 C -0.08 0.07 2.79 71.24 0.20 0.27 16 3 Si 0.77 -2.44 29.84 68.60 2.05 -0.40 16 4 C -0.13 -0.60 5.39 -19.85 -0.11 -0.71 16 5 C -0.10 -0.39 8.66 22.26 0.19 -0.20 16 6 C -0.20 -0.42 9.04 22.37 0.20 -0.22 16 7 C 0.12 0.72 6.69 22.51 0.15 0.88 16 8 O -0.31 -2.26 9.67 -73.43 -0.71 -2.97 16 9 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 10 C 0.52 1.29 7.91 87.66 0.69 1.98 16 11 O -0.57 -8.08 16.10 15.98 0.26 -7.82 16 12 N -0.70 3.50 5.35 -440.03 -2.36 1.14 16 13 C 0.12 -0.32 4.24 45.52 0.19 -0.12 16 14 H 0.10 0.26 7.46 -2.39 -0.02 0.24 16 15 C -0.12 0.53 7.38 31.12 0.23 0.76 16 16 C -0.04 0.05 4.29 -11.01 -0.05 0.01 16 17 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 18 C 0.02 0.03 6.70 43.58 0.29 0.32 16 19 N -0.41 -2.87 12.07 -49.54 -0.60 -3.47 16 20 O 0.08 0.28 11.20 71.57 0.80 1.08 16 21 C -0.05 0.23 12.30 67.18 0.83 1.05 16 22 C -0.24 1.00 10.28 22.40 0.23 1.23 16 23 C -0.13 0.50 7.27 31.12 0.23 0.73 16 24 C -0.16 -1.06 9.99 22.37 0.22 -0.83 16 25 C -0.06 -0.28 9.68 22.25 0.22 -0.06 16 26 H 0.40 -4.39 8.74 -74.06 -0.65 -5.03 16 27 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H -0.29 -1.07 7.05 99.48 0.70 -0.37 16 29 H -0.29 -0.55 7.11 99.48 0.71 0.16 16 30 H 0.13 0.28 4.86 -2.91 -0.01 0.26 16 31 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 32 H 0.12 -1.04 7.66 -2.39 -0.02 -1.06 16 33 H 0.12 -1.06 7.66 -2.39 -0.02 -1.08 16 34 H 0.42 -5.36 8.73 -92.71 -0.81 -6.17 16 35 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 36 H 0.11 -0.80 8.07 -2.39 -0.02 -0.82 16 37 H 0.26 -3.68 8.06 -2.91 -0.02 -3.70 16 38 H 0.20 -2.02 7.13 -2.91 -0.02 -2.04 16 39 H 0.11 -0.86 6.63 -2.39 -0.02 -0.87 16 40 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 42 H 0.15 0.26 8.06 -2.91 -0.02 0.24 16 Total: 0.00 -31.29 358.83 1.29 -30.01 By element: Atomic # 1 Polarization: -20.87 SS G_CDS: -0.34 Total: -21.21 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.09 Total: 5.37 kcal Atomic # 7 Polarization: 0.62 SS G_CDS: -2.95 Total: -2.33 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.56 Total: -11.44 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.05 Total: -0.40 kcal Total: -31.29 1.29 -30.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_2989410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.898 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds