Wall clock time and date at job start Sun Mar 7 2021 09:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86307 * 109.46857 * 2 1 4 4 C 1.50691 * 109.46992 * 239.99995 * 2 1 3 5 5 C 1.38248 * 119.97169 * 120.02157 * 4 2 1 6 6 C 1.38291 * 120.11064 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.05511 * 359.76734 * 6 5 4 8 8 C 1.38749 * 119.94123 * 0.50641 * 7 6 5 9 9 O 1.35904 * 120.05316 * 179.73985 * 8 7 6 10 10 C 1.42901 * 116.99827 * 359.73258 * 9 8 7 11 11 C 1.50703 * 109.46756 * 179.97438 * 10 9 8 12 12 C 1.38343 * 119.92421 * 270.01597 * 11 10 9 13 13 C 1.38381 * 120.29231 * 179.97438 * 12 11 10 14 14 C 1.37944 * 120.14152 * 0.02562 * 13 12 11 15 15 C 1.39591 * 119.85278 * 359.67672 * 14 13 12 16 16 C 1.47851 * 120.14586 * 180.29888 * 15 14 13 17 17 O 1.21548 * 120.00104 * 180.30009 * 16 15 14 18 18 N 1.34780 * 119.99404 * 0.29821 * 16 15 14 19 19 C 1.46501 * 119.99572 * 180.02562 * 18 16 15 20 20 H 1.09000 * 112.84942 * 334.66741 * 19 18 16 21 21 C 1.53776 * 113.61717 * 105.86579 * 19 18 16 22 22 C 1.53954 * 87.02100 * 139.95050 * 21 19 18 23 23 H 1.08998 * 113.61346 * 89.20587 * 22 21 19 24 24 C 1.50700 * 113.66345 * 220.06625 * 22 21 19 25 25 N 1.30184 * 126.79944 * 192.58331 * 24 22 21 26 26 O 1.20922 * 111.60243 * 179.97438 * 25 24 22 27 27 C 1.34037 * 111.56713 * 359.97438 * 26 25 24 28 28 C 1.35448 * 106.44972 * 359.75322 * 27 26 25 29 29 C 1.53775 * 87.10937 * 334.63864 * 22 21 19 30 30 C 1.37978 * 119.92957 * 90.00397 * 11 10 9 31 31 C 1.38165 * 119.97407 * 299.99845 * 4 2 1 32 32 H 0.96696 * 114.00208 * 59.99836 * 1 2 3 33 33 H 1.08998 * 109.47060 * 119.99390 * 2 1 3 34 34 H 1.48498 * 110.00062 * 60.00203 * 3 2 1 35 35 H 1.48504 * 109.99734 * 181.31672 * 3 2 1 36 36 H 1.07998 * 119.94513 * 359.97438 * 5 4 2 37 37 H 1.08003 * 119.96822 * 180.02562 * 6 5 4 38 38 H 1.08000 * 120.02471 * 180.27654 * 7 6 5 39 39 H 1.08995 * 109.47469 * 59.99666 * 10 9 8 40 40 H 1.08999 * 109.47341 * 299.99432 * 10 9 8 41 41 H 1.07993 * 119.85462 * 359.96342 * 12 11 10 42 42 H 1.07994 * 119.92774 * 180.02562 * 13 12 11 43 43 H 1.08005 * 120.07020 * 179.97438 * 14 13 12 44 44 H 0.96996 * 120.00513 * 0.02562 * 18 16 15 45 45 H 1.08998 * 113.61376 * 254.53213 * 21 19 18 46 46 H 1.09004 * 113.61319 * 25.43371 * 21 19 18 47 47 H 1.08003 * 126.77241 * 180.02562 * 27 26 25 48 48 H 1.07994 * 128.00840 * 180.22733 * 28 27 26 49 49 H 1.09009 * 113.61454 * 270.80994 * 29 22 21 50 50 H 1.09003 * 113.68894 * 139.92244 * 29 22 21 51 51 H 1.08002 * 120.07045 * 0.02562 * 30 11 10 52 52 H 1.08005 * 120.02658 * 0.04416 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7264 -0.0381 -2.1398 6 6 3.1894 -0.6874 -3.2697 7 6 2.8621 -2.0111 -3.4898 8 6 2.0596 -2.6864 -2.5814 9 8 1.7319 -3.9873 -2.7984 10 6 2.2439 -4.5959 -3.9856 11 6 1.7804 -6.0282 -4.0558 12 6 2.5470 -7.0302 -3.4880 13 6 2.1285 -8.3479 -3.5475 14 6 0.9430 -8.6704 -4.1747 15 6 0.1617 -7.6635 -4.7441 16 6 -1.1133 -8.0012 -5.4121 17 8 -1.7888 -7.1229 -5.9119 18 7 -1.5265 -9.2829 -5.4669 19 6 -2.7896 -9.6176 -6.1293 20 1 -3.4938 -8.7858 -6.1429 21 6 -2.6070 -10.2926 -7.4989 22 6 -3.7797 -11.2121 -7.1122 23 1 -4.7555 -10.8178 -7.3956 24 6 -3.5853 -12.6475 -7.5281 25 7 -4.4885 -13.5850 -7.5402 26 8 -4.0329 -14.6372 -7.9245 27 6 -2.7313 -14.5297 -8.2259 28 6 -2.3878 -13.2411 -7.9890 29 6 -3.4075 -10.9399 -5.6452 30 6 0.5925 -6.3374 -4.6858 31 6 1.5972 -2.0332 -1.4485 32 1 -0.3933 0.4417 -0.7650 33 1 1.7923 -0.5137 0.8900 34 1 1.5614 2.4679 1.2085 35 1 3.5346 1.7704 -0.0321 36 1 2.9864 0.9959 -1.9676 37 1 3.8107 -0.1601 -3.9784 38 1 3.2277 -2.5190 -4.3700 39 1 3.3333 -4.5674 -3.9679 40 1 1.8804 -4.0530 -4.8581 41 1 3.4762 -6.7830 -2.9964 42 1 2.7313 -9.1253 -3.1020 43 1 0.6176 -9.6993 -4.2208 44 1 -0.9876 -9.9837 -5.0678 45 1 -2.8249 -9.6364 -8.3415 46 1 -1.6573 -10.8170 -7.6041 47 1 -2.0851 -15.3146 -8.5904 48 1 -1.4221 -12.7755 -8.1194 49 1 -2.6770 -11.6417 -5.2426 50 1 -4.2700 -10.8057 -4.9923 51 1 -0.0049 -5.5542 -5.1288 52 1 0.9757 -2.5578 -0.7379 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_4549630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:06 Heat of formation + Delta-G solvation = 49.204768 kcal Electronic energy + Delta-G solvation = -35648.658568 eV Core-core repulsion = 30742.688918 eV Total energy + Delta-G solvation = -4905.969649 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.161 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -45.89251 -41.66588 -41.28806 -40.29244 -39.36302 -38.77146 -37.25651 -35.48230 -34.22962 -33.19495 -32.57386 -32.45936 -32.14234 -31.04671 -27.85678 -27.17081 -26.87363 -26.60885 -24.99676 -23.93104 -23.66364 -23.15719 -22.36176 -22.01996 -21.40133 -20.72837 -19.22679 -18.86068 -18.77169 -18.47732 -17.84177 -17.67265 -17.24395 -17.15498 -16.97532 -16.91558 -16.45340 -16.16976 -16.15803 -15.95777 -15.59328 -15.47778 -15.25022 -14.91247 -14.80927 -14.51205 -14.40312 -14.20214 -13.98614 -13.86202 -13.68088 -13.50798 -13.45981 -13.39062 -12.92574 -12.82950 -12.80107 -12.59742 -12.40364 -12.17948 -11.99549 -11.98194 -11.93752 -11.76018 -11.64949 -11.12306 -10.87940 -10.55988 -10.52355 -10.29653 -10.04249 -9.96089 -9.92604 -9.26896 -4.98895 -0.28201 0.14416 0.19989 0.39221 0.62667 1.28276 1.29528 1.64058 1.65529 1.94783 1.98452 2.24492 2.48473 2.67004 2.85708 3.12007 3.28189 3.45118 3.50169 3.55531 3.56742 3.66748 3.67784 3.76357 3.84159 3.86397 3.98675 3.99487 4.07387 4.09194 4.17367 4.23032 4.24940 4.29986 4.39544 4.43615 4.49326 4.51764 4.57623 4.63757 4.64398 4.71045 4.73825 4.75434 4.87595 4.88250 4.93933 4.97261 5.10939 5.16892 5.17578 5.25067 5.29167 5.37045 5.37978 5.43882 5.44968 5.70852 5.77275 6.36159 6.41424 6.72931 7.08129 7.36140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.789 3.211 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.116 3.884 9 O -0.329 6.329 10 C 0.099 3.901 11 C -0.114 4.114 12 C -0.070 4.070 13 C -0.126 4.126 14 C -0.067 4.067 15 C -0.156 4.156 16 C 0.558 3.442 17 O -0.580 6.580 18 N -0.698 5.698 19 C 0.122 3.878 20 H 0.101 0.899 21 C -0.129 4.129 22 C -0.038 4.038 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.406 5.406 26 O 0.079 5.921 27 C -0.047 4.047 28 C -0.239 4.239 29 C -0.120 4.120 30 C -0.054 4.054 31 C -0.148 4.148 32 H 0.395 0.605 33 H 0.104 0.896 34 H -0.300 1.300 35 H -0.280 1.280 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.149 0.851 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.416 0.584 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.257 0.743 48 H 0.196 0.804 49 H 0.105 0.895 50 H 0.081 0.919 51 H 0.119 0.881 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -3.029 -3.276 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.192 4.192 3 Si 0.694 3.306 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.071 3.929 9 O -0.243 6.243 10 C 0.025 3.975 11 C -0.115 4.115 12 C -0.088 4.088 13 C -0.143 4.143 14 C -0.086 4.086 15 C -0.159 4.159 16 C 0.347 3.653 17 O -0.461 6.461 18 N -0.350 5.350 19 C 0.017 3.983 20 H 0.119 0.881 21 C -0.168 4.168 22 C -0.058 4.058 23 H 0.121 0.879 24 C -0.138 4.138 25 N -0.112 5.112 26 O 0.015 5.985 27 C -0.127 4.127 28 C -0.260 4.260 29 C -0.159 4.159 30 C -0.073 4.073 31 C -0.167 4.167 32 H 0.245 0.755 33 H 0.121 0.879 34 H -0.228 1.228 35 H -0.207 1.207 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.181 0.819 43 H 0.177 0.823 44 H 0.255 0.745 45 H 0.093 0.907 46 H 0.127 0.873 47 H 0.273 0.727 48 H 0.213 0.787 49 H 0.123 0.877 50 H 0.100 0.900 51 H 0.137 0.863 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.171 -2.371 -2.249 7.881 hybrid contribution 0.708 -0.713 0.074 1.007 sum 7.879 -3.084 -2.175 8.736 Atomic orbital electron populations 1.86468 1.17381 1.82279 1.50436 1.25375 0.85266 1.11649 0.96879 0.93496 0.77855 0.74551 0.84658 1.20219 0.97751 0.93466 0.97016 1.21190 1.00393 1.00745 0.95349 1.21298 0.97396 0.93476 0.96825 1.21582 1.02805 0.97001 1.01230 1.19181 0.95219 0.83527 0.94939 1.86133 1.71588 1.22833 1.43780 1.21748 0.99747 0.89590 0.86444 1.19526 0.95958 0.94561 1.01418 1.21644 0.99658 0.92747 0.94750 1.21519 0.96639 0.96935 0.99256 1.21695 0.93632 0.99378 0.93880 1.19895 0.96124 0.95044 1.04817 1.18568 0.85321 0.82895 0.78482 1.90775 1.57691 1.48848 1.48790 1.45722 1.23465 1.07798 1.58014 1.22410 0.85901 0.96802 0.93170 0.88122 1.23539 0.98574 0.97124 0.97526 1.20712 1.00742 0.86739 0.97579 0.87874 1.23726 0.90830 0.97434 1.01854 1.73884 1.24707 0.93739 1.18878 1.84818 1.24423 1.28340 1.60915 1.26906 0.84837 1.00652 1.00335 1.23043 1.01124 0.94377 1.07476 1.23332 1.01749 0.95653 0.95136 1.21176 0.94518 0.95903 0.95711 1.20295 1.04030 0.94856 0.97543 0.75498 0.87859 1.22803 1.20661 0.83446 0.82432 0.83338 0.88699 0.90208 0.83375 0.81872 0.82263 0.74477 0.90689 0.87253 0.72747 0.78695 0.87668 0.90004 0.86258 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.80 12.77 -148.98 -1.90 -3.70 16 2 C -0.08 -0.15 2.82 71.23 0.20 0.05 16 3 Si 0.79 -1.28 29.79 68.60 2.04 0.76 16 4 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16 5 C -0.16 0.14 8.67 22.28 0.19 0.33 16 6 C -0.07 0.14 10.04 22.26 0.22 0.36 16 7 C -0.21 -0.06 9.04 22.37 0.20 0.14 16 8 C 0.12 0.60 6.69 22.50 0.15 0.75 16 9 O -0.33 -2.01 10.12 -92.47 -0.94 -2.95 16 10 C 0.10 -0.01 4.86 71.24 0.35 0.34 16 11 C -0.11 -0.13 5.50 -19.90 -0.11 -0.24 16 12 C -0.07 0.20 9.69 22.33 0.22 0.42 16 13 C -0.13 0.72 10.03 22.23 0.22 0.94 16 14 C -0.07 0.32 9.54 22.53 0.21 0.54 16 15 C -0.16 -0.35 5.87 -20.09 -0.12 -0.47 16 16 C 0.56 2.95 7.77 86.79 0.67 3.62 16 17 O -0.58 -8.35 15.97 -3.87 -0.06 -8.41 16 18 N -0.70 1.54 5.31 -442.91 -2.35 -0.82 16 19 C 0.12 -0.15 4.21 45.51 0.19 0.04 16 20 H 0.10 0.35 7.50 -2.39 -0.02 0.34 16 21 C -0.13 0.40 7.28 31.18 0.23 0.62 16 22 C -0.04 0.03 4.29 -10.96 -0.05 -0.02 16 23 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 24 C 0.02 0.04 6.70 43.58 0.29 0.33 16 25 N -0.41 -2.93 12.07 -49.54 -0.60 -3.53 16 26 O 0.08 0.29 11.20 71.66 0.80 1.09 16 27 C -0.05 0.23 12.30 67.17 0.83 1.05 16 28 C -0.24 0.96 10.28 22.40 0.23 1.19 16 29 C -0.12 0.41 7.38 31.12 0.23 0.64 16 30 C -0.05 -0.25 9.24 22.53 0.21 -0.04 16 31 C -0.15 -0.95 9.55 22.36 0.21 -0.73 16 32 H 0.40 -1.94 8.70 -74.06 -0.64 -2.59 16 33 H 0.10 0.35 7.96 -2.39 -0.02 0.33 16 34 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16 35 H -0.28 -0.58 7.11 99.48 0.71 0.12 16 36 H 0.15 -0.80 4.87 -2.91 -0.01 -0.82 16 37 H 0.16 -1.20 8.06 -2.91 -0.02 -1.23 16 38 H 0.15 -0.63 6.30 -2.91 -0.02 -0.65 16 39 H 0.09 -0.44 7.59 -2.39 -0.02 -0.46 16 40 H 0.08 -0.12 7.62 -2.39 -0.02 -0.14 16 41 H 0.15 -1.01 8.06 -2.91 -0.02 -1.03 16 42 H 0.16 -1.87 8.06 -2.91 -0.02 -1.90 16 43 H 0.16 -1.91 6.41 -2.91 -0.02 -1.93 16 44 H 0.42 -3.75 6.75 -92.71 -0.63 -4.37 16 45 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.11 -0.74 6.63 -2.39 -0.02 -0.75 16 47 H 0.26 -3.71 8.06 -2.91 -0.02 -3.74 16 48 H 0.20 -1.96 7.12 -2.91 -0.02 -1.98 16 49 H 0.10 -0.66 8.06 -2.38 -0.02 -0.68 16 50 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 51 H 0.12 0.90 7.65 -2.91 -0.02 0.88 16 52 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -30.37 436.47 1.44 -28.92 By element: Atomic # 1 Polarization: -20.68 SS G_CDS: -0.23 Total: -20.91 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.68 Total: 9.55 kcal Atomic # 7 Polarization: -1.39 SS G_CDS: -2.95 Total: -4.34 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -2.10 Total: -13.97 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.04 Total: 0.76 kcal Total: -30.37 1.44 -28.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_4549630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.127 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds