Wall clock time and date at job start Sun Mar 7 2021 09:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47185 * 119.99778 * 2 1 3 5 5 C 1.38274 * 119.94301 * 65.00307 * 4 2 1 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 2 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35897 * 120.05494 * 180.25974 * 7 6 5 9 9 C 1.42901 * 117.00083 * 0.31613 * 8 7 6 10 10 C 1.50700 * 109.47108 * 180.02562 * 9 8 7 11 11 C 1.36408 * 125.80573 * 89.99840 * 10 9 8 12 12 C 1.47379 * 127.19381 * 359.95801 * 11 10 9 13 13 O 1.21614 * 119.99546 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00348 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99925 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.84892 * 23.80147 * 15 14 12 17 17 C 1.53782 * 113.61191 * 154.99865 * 15 14 12 18 18 C 1.53779 * 87.07899 * 139.98052 * 17 15 14 19 19 H 1.09000 * 113.61889 * 89.11815 * 18 17 15 20 20 C 1.50705 * 113.61451 * 220.01864 * 18 17 15 21 21 N 1.30180 * 126.80017 * 265.02570 * 20 18 17 22 22 O 1.20918 * 111.59980 * 179.97438 * 21 20 18 23 23 C 1.34044 * 111.57171 * 359.97438 * 22 21 20 24 24 C 1.35448 * 106.44290 * 359.74781 * 23 22 21 25 25 C 1.53781 * 113.61114 * 252.49487 * 15 14 12 26 26 C 1.47023 * 105.61891 * 179.97438 * 11 10 9 27 27 C 1.34177 * 105.95011 * 0.02562 * 26 11 10 28 28 O 1.33653 * 125.79923 * 269.69018 * 10 9 8 29 29 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 30 30 C 1.38149 * 119.94512 * 359.70901 * 29 7 6 31 31 H 0.96696 * 114.00119 * 59.99558 * 1 2 3 32 32 H 1.08998 * 109.47382 * 240.00321 * 2 1 3 33 33 H 1.48503 * 110.00048 * 59.99824 * 3 2 1 34 34 H 1.48497 * 110.00195 * 181.31741 * 3 2 1 35 35 H 1.08002 * 119.96836 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 37 37 H 1.09001 * 109.46722 * 299.99905 * 9 8 7 38 38 H 1.08994 * 109.47228 * 60.00588 * 9 8 7 39 39 H 0.96999 * 120.00435 * 359.97438 * 14 12 11 40 40 H 1.09000 * 113.61527 * 254.52382 * 17 15 14 41 41 H 1.08995 * 113.61605 * 25.34890 * 17 15 14 42 42 H 1.07996 * 126.77536 * 180.02562 * 23 22 21 43 43 H 1.07999 * 128.00515 * 180.22807 * 24 23 22 44 44 H 1.08996 * 113.61728 * 334.56432 * 25 15 14 45 45 H 1.09005 * 113.61268 * 105.47688 * 25 15 14 46 46 H 1.08002 * 127.02359 * 180.02562 * 26 11 10 47 47 H 1.08004 * 125.43458 * 179.97438 * 27 26 11 48 48 H 1.07998 * 120.02609 * 179.72431 * 29 7 6 49 49 H 1.07997 * 119.96847 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1385 -2.7127 2.5270 7 6 2.8535 -2.0145 3.4893 8 8 3.3061 -2.6550 4.5990 9 6 3.0155 -4.0500 4.7069 10 6 3.5912 -4.5852 5.9927 11 6 2.9502 -4.6311 7.1959 12 6 1.5809 -4.1747 7.4938 13 8 0.8948 -3.6941 6.6122 14 7 1.0893 -4.2891 8.7435 15 6 -0.2721 -3.8360 9.0395 16 1 -0.9137 -3.8197 8.1584 17 6 -0.9062 -4.5405 10.2504 18 6 -1.4924 -3.1731 10.6395 19 1 -2.4683 -2.9743 10.1965 20 6 -1.4541 -2.8994 12.1210 21 7 -2.4115 -3.1092 12.9778 22 8 -2.0845 -2.7907 14.0975 23 6 -0.8315 -2.3154 14.1286 24 6 -0.3689 -2.3705 12.8568 25 6 -0.3239 -2.5400 9.8657 26 6 3.9109 -5.2306 8.1336 27 6 5.0172 -5.4824 7.4173 28 8 4.8146 -5.1008 6.1466 29 6 3.1000 -0.6598 3.3198 30 6 2.6383 -0.0109 2.1909 31 1 -0.3933 0.4417 -0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 1.5615 2.4679 1.2085 34 1 3.5346 1.7703 -0.0321 35 1 1.1309 -2.6045 0.6459 36 1 1.9410 -3.7663 2.6591 37 1 1.9355 -4.1974 4.7036 38 1 3.4571 -4.5795 3.8627 39 1 1.6366 -4.6722 9.4468 40 1 -1.6616 -5.2784 9.9801 41 1 -0.1768 -4.9234 10.9641 42 1 -0.2952 -1.9628 14.9971 43 1 0.6030 -2.0759 12.4893 44 1 0.5646 -2.3748 10.4750 45 1 -0.6093 -1.6630 9.2848 46 1 3.7574 -5.4280 9.1842 47 1 5.9243 -5.9255 7.8010 48 1 3.6525 -0.1131 4.0695 49 1 2.8297 1.0438 2.0588 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_4549634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:16 Heat of formation + Delta-G solvation = 42.561730 kcal Electronic energy + Delta-G solvation = -35618.499615 eV Core-core repulsion = 30677.323470 eV Total energy + Delta-G solvation = -4941.176145 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.145 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.91753 -43.76377 -41.41661 -41.19492 -39.54914 -39.20301 -37.26989 -35.45716 -34.40825 -33.59207 -32.85264 -32.58562 -32.28889 -31.51513 -28.23518 -27.04816 -26.89400 -26.16277 -24.78263 -24.03516 -23.88257 -22.66451 -22.31545 -21.70222 -21.42638 -20.52376 -19.65484 -19.13582 -18.82808 -18.50424 -18.36823 -17.69068 -17.39110 -17.33481 -17.05185 -16.85329 -16.65637 -16.42030 -16.19102 -16.03198 -15.82107 -15.52237 -15.19572 -14.86617 -14.50909 -14.38937 -14.33694 -14.23878 -13.99791 -13.81871 -13.80149 -13.70563 -13.56152 -13.45130 -13.28216 -12.82966 -12.43790 -12.42530 -12.27394 -12.05878 -11.98645 -11.91524 -11.78733 -11.20267 -11.00987 -10.90600 -10.58379 -10.29039 -10.23454 -10.20849 -9.87051 -9.36530 -4.95790 -0.09804 0.06256 0.16341 0.60082 0.99788 1.25539 1.30563 1.45389 1.63562 1.96283 1.97851 2.07050 2.37366 2.45842 2.46881 3.09742 3.26145 3.28163 3.41840 3.48262 3.54305 3.60794 3.62940 3.68559 3.70527 3.83149 3.83769 3.90258 3.97005 4.04476 4.10680 4.21369 4.27305 4.40790 4.41664 4.42796 4.51039 4.52990 4.60534 4.62442 4.70251 4.73316 4.76422 4.79998 4.84832 4.90948 4.97958 5.09127 5.12716 5.14733 5.23689 5.31480 5.42936 5.49377 5.84662 6.12214 6.39921 6.92606 7.05623 7.33463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.073 4.073 3 Si 0.773 3.227 4 C -0.129 4.129 5 C -0.054 4.054 6 C -0.205 4.205 7 C 0.126 3.874 8 O -0.320 6.320 9 C 0.134 3.866 10 C 0.039 3.961 11 C -0.222 4.222 12 C 0.584 3.416 13 O -0.573 6.573 14 N -0.694 5.694 15 C 0.124 3.876 16 H 0.103 0.897 17 C -0.118 4.118 18 C -0.037 4.037 19 H 0.104 0.896 20 C 0.019 3.981 21 N -0.404 5.404 22 O 0.080 5.920 23 C -0.045 4.045 24 C -0.240 4.240 25 C -0.131 4.131 26 C -0.195 4.195 27 C -0.011 4.011 28 O -0.178 6.178 29 C -0.158 4.158 30 C -0.098 4.098 31 H 0.403 0.597 32 H 0.097 0.903 33 H -0.299 1.299 34 H -0.288 1.288 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.257 0.743 43 H 0.194 0.806 44 H 0.107 0.893 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.253 0.747 48 H 0.138 0.862 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -1.817 1.005 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.130 4.130 5 C -0.071 4.071 6 C -0.224 4.224 7 C 0.081 3.919 8 O -0.234 6.234 9 C 0.060 3.940 10 C -0.014 4.014 11 C -0.227 4.227 12 C 0.373 3.627 13 O -0.453 6.453 14 N -0.345 5.345 15 C 0.019 3.981 16 H 0.121 0.879 17 C -0.157 4.157 18 C -0.057 4.057 19 H 0.122 0.878 20 C -0.139 4.139 21 N -0.110 5.110 22 O 0.016 5.984 23 C -0.126 4.126 24 C -0.262 4.262 25 C -0.170 4.170 26 C -0.214 4.214 27 C -0.077 4.077 28 O -0.073 6.073 29 C -0.176 4.176 30 C -0.115 4.115 31 H 0.254 0.746 32 H 0.115 0.885 33 H -0.227 1.227 34 H -0.215 1.215 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.255 0.745 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.273 0.727 43 H 0.211 0.789 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.211 0.789 47 H 0.269 0.731 48 H 0.156 0.844 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.270 -1.657 1.218 4.740 hybrid contribution 0.851 -0.390 0.726 1.184 sum 5.121 -2.047 1.944 5.847 Atomic orbital electron populations 1.86454 1.17316 1.82363 1.51394 1.24746 0.85785 1.10799 0.96958 0.94527 0.77361 0.75598 0.84598 1.19661 1.01324 0.94932 0.97047 1.21062 0.95812 0.93504 0.96767 1.21556 1.03223 1.01815 0.95790 1.19075 0.94503 0.92223 0.86073 1.86038 1.74044 1.23463 1.39861 1.21150 1.00943 0.79526 0.92380 1.21978 0.83909 0.99461 0.96054 1.21387 0.96654 1.10031 0.94629 1.17485 0.85026 0.77248 0.82960 1.90790 1.60837 1.46567 1.47153 1.45581 1.15754 1.63095 1.10049 1.22412 0.83109 0.95149 0.97393 0.87870 1.23325 1.00430 0.95714 0.96203 1.20676 1.00340 0.98489 0.86149 0.87795 1.23725 0.90984 1.01211 0.97986 1.73879 1.25110 1.20560 0.91480 1.84817 1.29635 1.59517 1.24439 1.26896 0.84807 0.98939 1.01977 1.23031 1.02526 1.07738 0.92868 1.23519 0.98151 0.97725 0.97641 1.23259 0.92054 1.04233 1.01806 1.24943 1.02245 1.01422 0.79074 1.83792 1.30287 1.60972 1.32261 1.20464 1.05280 0.92146 0.99754 1.20825 0.98239 0.98921 0.93523 0.74584 0.88537 1.22729 1.21504 0.83340 0.83276 0.87581 0.88138 0.74533 0.89801 0.87730 0.72723 0.78900 0.87493 0.91003 0.78866 0.73105 0.84420 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.02 12.81 -148.98 -1.91 -2.93 16 2 C -0.07 -0.11 2.79 71.23 0.20 0.09 16 3 Si 0.77 -0.02 29.85 68.60 2.05 2.03 16 4 C -0.13 -1.02 5.38 -19.85 -0.11 -1.12 16 5 C -0.05 -0.36 9.68 22.26 0.22 -0.15 16 6 C -0.21 -1.54 9.04 22.37 0.20 -1.34 16 7 C 0.13 1.37 6.69 22.51 0.15 1.52 16 8 O -0.32 -3.63 10.12 -92.39 -0.93 -4.56 16 9 C 0.13 0.87 4.74 71.24 0.34 1.21 16 10 C 0.04 0.23 7.00 25.26 0.18 0.40 16 11 C -0.22 -0.86 6.31 -18.99 -0.12 -0.98 16 12 C 0.58 3.72 7.81 86.65 0.68 4.39 16 13 O -0.57 -8.08 14.44 -4.08 -0.06 -8.14 16 14 N -0.69 0.65 5.35 -443.33 -2.37 -1.73 16 15 C 0.12 -0.04 4.24 45.52 0.19 0.16 16 16 H 0.10 0.42 7.46 -2.39 -0.02 0.40 16 17 C -0.12 0.33 7.38 31.12 0.23 0.56 16 18 C -0.04 0.00 4.29 -11.01 -0.05 -0.05 16 19 H 0.10 0.17 8.14 -2.39 -0.02 0.16 16 20 C 0.02 0.05 6.70 43.58 0.29 0.35 16 21 N -0.40 -3.17 12.07 -49.56 -0.60 -3.77 16 22 O 0.08 0.34 11.20 71.60 0.80 1.14 16 23 C -0.05 0.18 12.30 67.17 0.83 1.01 16 24 C -0.24 0.69 10.28 22.40 0.23 0.92 16 25 C -0.13 0.19 7.27 31.12 0.23 0.41 16 26 C -0.19 0.79 10.60 23.65 0.25 1.04 16 27 C -0.01 0.05 12.03 66.89 0.80 0.86 16 28 O -0.18 -0.52 10.52 4.51 0.05 -0.47 16 29 C -0.16 -1.69 9.99 22.37 0.22 -1.46 16 30 C -0.10 -0.94 8.66 22.25 0.19 -0.75 16 31 H 0.40 -3.68 8.74 -74.06 -0.65 -4.33 16 32 H 0.10 -0.32 7.96 -2.39 -0.02 -0.33 16 33 H -0.30 -2.36 7.05 99.48 0.70 -1.66 16 34 H -0.29 -1.51 7.11 99.48 0.71 -0.80 16 35 H 0.15 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.15 0.44 6.30 -2.91 -0.02 0.43 16 37 H 0.11 0.84 5.99 -2.39 -0.01 0.82 16 38 H 0.10 0.17 7.68 -2.39 -0.02 0.15 16 39 H 0.42 -3.04 7.90 -92.71 -0.73 -3.77 16 40 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.10 -0.58 8.07 -2.39 -0.02 -0.60 16 42 H 0.26 -3.51 8.06 -2.91 -0.02 -3.53 16 43 H 0.19 -1.63 7.12 -2.91 -0.02 -1.65 16 44 H 0.11 -0.50 6.62 -2.39 -0.02 -0.51 16 45 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 46 H 0.19 -2.26 7.74 -2.91 -0.02 -2.28 16 47 H 0.25 -3.46 8.06 -2.91 -0.02 -3.48 16 48 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.13 1.02 4.86 -2.91 -0.01 1.00 16 Total: 0.00 -31.89 416.80 1.87 -30.02 By element: Atomic # 1 Polarization: -18.34 SS G_CDS: -0.30 Total: -18.65 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.15 Total: 7.06 kcal Atomic # 7 Polarization: -2.52 SS G_CDS: -2.97 Total: -5.49 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -2.05 Total: -14.96 kcal Atomic # 14 Polarization: -0.02 SS G_CDS: 2.05 Total: 2.03 kcal Total: -31.89 1.87 -30.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_4549634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.577 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds