Wall clock time and date at job start Sun Mar 7 2021 09:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 116.99716 * 2 1 4 4 C 1.39153 * 120.07153 * 180.02562 * 3 2 1 5 5 O 1.36003 * 120.07084 * 0.04706 * 4 3 2 6 6 C 1.42904 * 116.99524 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46515 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00405 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99433 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99721 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.84606 * 23.80476 * 10 9 7 12 12 C 1.53778 * 113.61102 * 155.00029 * 10 9 7 13 13 C 1.53785 * 87.08014 * 139.98165 * 12 10 9 14 14 H 1.08998 * 113.60981 * 89.20040 * 13 12 10 15 15 C 1.50693 * 113.61263 * 220.01556 * 13 12 10 16 16 N 1.30181 * 126.80394 * 264.68380 * 15 13 12 17 17 O 1.20921 * 111.60087 * 179.80093 * 16 15 13 18 18 C 1.34035 * 111.57202 * 0.48705 * 17 16 15 19 19 C 1.35450 * 106.44217 * 359.70676 * 18 17 16 20 20 C 1.53779 * 87.07980 * 334.56628 * 13 12 10 21 21 C 1.38562 * 119.85486 * 180.02562 * 4 3 2 22 22 C 1.38240 * 119.99958 * 0.02562 * 21 4 3 23 23 N 1.48007 * 119.92897 * 179.97438 * 22 21 4 24 24 O 1.21803 * 119.99745 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00052 * 179.72344 * 23 22 21 26 26 C 1.38257 * 120.14383 * 0.24627 * 22 21 4 27 27 C 1.50706 * 119.92404 * 179.74899 * 26 22 21 28 28 O 1.42891 * 109.47213 * 75.00334 * 27 26 22 29 29 Si 1.86299 * 109.46945 * 195.00276 * 27 26 22 30 30 C 1.38243 * 120.14602 * 359.49880 * 26 22 21 31 31 H 1.08996 * 109.47157 * 60.00095 * 1 2 3 32 32 H 1.09006 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47353 * 299.99530 * 1 2 3 34 34 H 1.08997 * 109.46886 * 299.99732 * 6 5 4 35 35 H 1.08996 * 109.47434 * 60.00264 * 6 5 4 36 36 H 0.97003 * 120.00347 * 359.97438 * 9 7 6 37 37 H 1.09009 * 113.61063 * 254.52768 * 12 10 9 38 38 H 1.08997 * 113.61755 * 25.34689 * 12 10 9 39 39 H 1.07998 * 126.78200 * 179.72999 * 18 17 16 40 40 H 1.08009 * 128.00490 * 179.97438 * 19 18 17 41 41 H 1.09000 * 113.61137 * 270.88639 * 20 13 12 42 42 H 1.09004 * 113.61408 * 139.98227 * 20 13 12 43 43 H 1.08004 * 119.99948 * 179.97438 * 21 4 3 44 44 H 1.09004 * 109.47010 * 315.00544 * 27 26 22 45 45 H 0.96708 * 114.00053 * 59.99518 * 28 27 26 46 46 H 1.48498 * 110.00009 * 179.97438 * 29 27 26 47 47 H 1.48494 * 110.00098 * 301.32162 * 29 27 26 48 48 H 1.07997 * 119.99868 * 180.25080 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0020 6 6 5.6004 0.3008 -0.0031 7 6 6.2519 -1.0582 -0.0053 8 8 5.5671 -2.0590 -0.0055 9 7 7.5957 -1.1611 -0.0071 10 6 8.2292 -2.4821 -0.0087 11 1 7.5829 -3.2608 -0.4137 12 6 9.6462 -2.4850 -0.6060 13 6 10.0328 -3.4614 0.5174 14 1 9.8815 -4.5089 0.2566 15 6 11.3942 -3.1957 1.1061 16 7 12.5141 -3.7689 0.7714 17 8 13.4426 -3.3441 1.4191 18 6 13.0451 -2.4149 2.2995 19 6 11.7074 -2.2790 2.1358 20 6 8.8794 -2.8551 1.3340 21 6 4.0603 2.5234 0.0000 22 6 3.3029 3.6799 0.0016 23 7 3.9714 5.0004 0.0028 24 8 5.1876 5.0672 0.0028 25 8 3.3054 6.0202 -0.0009 26 6 1.9223 3.6057 0.0078 27 6 1.1016 4.8696 0.0153 28 8 1.1284 5.4627 -1.2845 29 14 -0.6574 4.4650 0.4770 30 6 1.2932 2.3747 0.0020 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 5.9058 0.8512 -0.8929 35 1 5.9073 0.8498 0.8871 36 1 8.1435 -0.3605 -0.0074 37 1 9.6989 -2.9232 -1.6028 38 1 10.1496 -1.5205 -0.5405 39 1 13.6684 -1.8798 3.0007 40 1 11.0355 -1.6226 2.6689 41 1 9.1738 -1.9921 1.9312 42 1 8.3131 -3.5920 1.9036 43 1 5.1386 2.5841 0.0000 44 1 1.5166 5.5681 0.7420 45 1 0.7733 4.8959 -1.9829 46 1 -1.4771 5.7032 0.4885 47 1 -1.2242 3.4891 -0.4880 48 1 0.2146 2.3196 0.0028 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_4549636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:21 Heat of formation + Delta-G solvation = 0.886333 kcal Electronic energy + Delta-G solvation = -37876.870572 eV Core-core repulsion = 32487.549231 eV Total energy + Delta-G solvation = -5389.321340 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.139 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.88521 -43.37817 -42.11649 -41.32457 -40.14289 -39.35130 -39.09380 -37.71710 -37.22919 -35.41236 -33.99074 -32.68903 -32.58928 -32.50383 -30.00881 -28.81602 -27.91812 -26.87489 -26.78050 -25.75494 -24.14327 -23.82783 -23.21857 -22.42699 -21.66064 -20.81450 -20.77094 -19.82118 -19.53582 -18.85923 -18.72582 -18.65008 -18.47308 -18.33471 -17.74641 -17.70067 -17.45513 -17.12086 -16.87191 -16.50196 -16.29642 -16.19788 -15.92658 -15.63087 -15.44332 -15.10664 -14.83095 -14.48727 -14.36872 -13.99555 -13.86031 -13.76347 -13.63800 -13.46229 -13.39679 -13.06189 -12.82314 -12.69462 -12.49310 -12.47733 -12.40537 -12.34020 -12.23800 -12.11086 -11.93976 -11.75999 -11.70333 -11.07274 -10.86634 -10.64771 -10.55443 -10.48148 -10.19190 -9.49176 -5.00509 -1.34439 -0.43459 0.17997 0.32529 0.63054 1.13333 1.23618 1.29941 1.38676 1.46338 1.87581 1.88634 1.93832 2.33271 2.49301 2.98033 3.11104 3.18753 3.26648 3.29964 3.41856 3.48066 3.50406 3.55235 3.66541 3.87118 3.89427 3.94324 3.97874 4.00905 4.06332 4.09943 4.25247 4.30574 4.31917 4.37971 4.47174 4.58108 4.59906 4.66262 4.71968 4.73579 4.76434 4.76952 4.88605 4.95815 5.11359 5.18149 5.28096 5.43473 5.58745 6.04652 6.39394 6.42998 6.50046 7.07439 7.36520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.307 6.307 3 C 0.169 3.831 4 C 0.102 3.898 5 O -0.291 6.291 6 C 0.026 3.974 7 C 0.518 3.482 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.126 3.874 11 H 0.102 0.898 12 C -0.120 4.120 13 C -0.040 4.040 14 H 0.102 0.898 15 C 0.020 3.980 16 N -0.406 5.406 17 O 0.077 5.923 18 C -0.048 4.048 19 C -0.239 4.239 20 C -0.129 4.129 21 C -0.108 4.108 22 C -0.042 4.042 23 N 0.036 4.964 24 O -0.186 6.186 25 O -0.163 6.163 26 C -0.034 4.034 27 C -0.102 4.102 28 O -0.529 6.529 29 Si 0.774 3.226 30 C -0.172 4.172 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.422 0.578 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.256 0.744 40 H 0.197 0.803 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.185 0.815 44 H 0.128 0.872 45 H 0.383 0.617 46 H -0.295 1.295 47 H -0.250 1.250 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -0.266 4.345 4.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.218 6.218 3 C 0.120 3.880 4 C 0.055 3.945 5 O -0.203 6.203 6 C -0.052 4.052 7 C 0.304 3.696 8 O -0.443 6.443 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.120 0.880 12 C -0.159 4.159 13 C -0.059 4.059 14 H 0.120 0.880 15 C -0.139 4.139 16 N -0.113 5.113 17 O 0.014 5.986 18 C -0.128 4.128 19 C -0.260 4.260 20 C -0.168 4.168 21 C -0.128 4.128 22 C -0.127 4.127 23 N 0.549 4.451 24 O -0.397 6.397 25 O -0.378 6.378 26 C -0.036 4.036 27 C -0.208 4.208 28 O -0.336 6.336 29 Si 0.675 3.325 30 C -0.191 4.191 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.261 0.739 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.214 0.786 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.202 0.798 44 H 0.146 0.854 45 H 0.232 0.768 46 H -0.222 1.222 47 H -0.175 1.175 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.635 -2.464 3.525 5.043 hybrid contribution 0.592 1.441 -0.786 1.745 sum -2.043 -1.023 2.739 3.566 Atomic orbital electron populations 1.23743 0.74990 1.06947 1.03719 1.86329 1.24526 1.24664 1.86299 1.18676 0.89247 0.86261 0.93816 1.17941 0.88686 0.85183 1.02671 1.86308 1.18538 1.26795 1.88703 1.22941 0.78743 0.96106 1.07393 1.20346 0.83140 0.90403 0.75703 1.90785 1.63943 1.39817 1.49801 1.45634 1.05107 1.09977 1.74389 1.22375 0.92696 0.85497 0.97330 0.88016 1.23346 0.93886 1.00397 0.98276 1.20700 0.86839 1.00740 0.97667 0.87963 1.23760 0.95405 0.96693 0.98011 1.73884 0.97514 1.21901 1.17996 1.84816 1.31757 1.43583 1.38468 1.26904 0.96901 0.93294 0.95733 1.23054 0.96624 1.04575 1.01717 1.23522 0.94559 1.01870 0.96868 1.20909 1.03046 0.88065 1.00788 1.20534 0.92654 0.81987 1.17505 1.43697 1.00820 1.03387 0.97207 1.94504 0.96492 1.94100 1.54593 1.94582 1.64451 1.25360 1.53374 1.20088 0.91035 0.97329 0.95194 1.25766 1.11646 0.93746 0.89686 1.86775 1.85259 1.44986 1.16569 0.94250 0.70235 0.79744 0.88256 1.21213 1.02208 0.88439 1.07262 0.90766 0.85950 0.89250 0.85551 0.85052 0.73921 0.90096 0.87588 0.72857 0.78575 0.87076 0.90702 0.79792 0.85406 0.76816 1.22232 1.17533 0.79686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 0.03 10.28 -79.67 -0.82 -0.79 16 3 C 0.17 -0.21 6.70 22.57 0.15 -0.06 16 4 C 0.10 -0.03 6.70 22.57 0.15 0.12 16 5 O -0.29 -0.63 9.46 -67.17 -0.64 -1.26 16 6 C 0.03 -0.15 5.22 71.24 0.37 0.22 16 7 C 0.52 -0.16 7.91 87.66 0.69 0.53 16 8 O -0.57 -6.29 16.10 16.02 0.26 -6.03 16 9 N -0.70 4.79 5.35 -440.03 -2.36 2.44 16 10 C 0.13 -0.52 4.24 45.51 0.19 -0.32 16 11 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 12 C -0.12 0.65 7.38 31.12 0.23 0.88 16 13 C -0.04 0.09 4.29 -11.02 -0.05 0.04 16 14 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 15 C 0.02 0.02 6.70 43.57 0.29 0.31 16 16 N -0.41 -2.72 12.07 -49.56 -0.60 -3.32 16 17 O 0.08 0.26 11.20 71.68 0.80 1.06 16 18 C -0.05 0.24 12.30 67.18 0.83 1.07 16 19 C -0.24 1.12 10.28 22.40 0.23 1.35 16 20 C -0.13 0.68 7.27 31.12 0.23 0.90 16 21 C -0.11 0.20 8.54 22.35 0.19 0.39 16 22 C -0.04 -0.09 6.85 36.38 0.25 0.16 16 23 N 0.04 0.29 4.45 -46.46 -0.21 0.08 16 24 O -0.19 -1.71 18.44 18.88 0.35 -1.37 16 25 O -0.16 -1.86 14.61 25.13 0.37 -1.50 16 26 C -0.03 0.04 5.26 -19.86 -0.10 -0.06 16 27 C -0.10 0.06 1.74 71.24 0.12 0.18 16 28 O -0.53 -1.53 11.78 -129.53 -1.53 -3.06 16 29 Si 0.77 -4.58 30.25 68.60 2.08 -2.50 16 30 C -0.17 0.85 7.65 22.35 0.17 1.02 16 31 H 0.07 -0.83 7.67 -2.39 -0.02 -0.85 16 32 H 0.12 -1.30 8.14 -2.38 -0.02 -1.32 16 33 H 0.09 -1.19 7.66 -2.39 -0.02 -1.21 16 34 H 0.13 -1.45 7.66 -2.39 -0.02 -1.47 16 35 H 0.13 -1.62 7.66 -2.39 -0.02 -1.64 16 36 H 0.42 -5.96 8.73 -92.71 -0.81 -6.77 16 37 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 38 H 0.11 -0.86 8.07 -2.39 -0.02 -0.88 16 39 H 0.26 -3.70 8.06 -2.91 -0.02 -3.73 16 40 H 0.20 -2.15 7.12 -2.91 -0.02 -2.17 16 41 H 0.11 -1.00 6.62 -2.39 -0.02 -1.02 16 42 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.18 -1.23 5.85 -2.91 -0.02 -1.24 16 44 H 0.13 0.24 6.08 -2.38 -0.01 0.23 16 45 H 0.38 -1.78 8.70 -74.05 -0.64 -2.42 16 46 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 47 H -0.25 1.72 6.67 99.48 0.66 2.38 16 48 H 0.19 -1.89 3.09 -2.91 -0.01 -1.90 16 Total: 0.00 -35.47 409.61 2.40 -33.07 By element: Atomic # 1 Polarization: -24.31 SS G_CDS: -0.37 Total: -24.69 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.06 Total: 7.86 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -3.16 Total: -0.80 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.20 Total: -12.95 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.08 Total: -2.50 kcal Total: -35.47 2.40 -33.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_4549636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.958 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds