Wall clock time and date at job start Sun Mar 7 2021 09:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86297 * 109.47080 * 2 1 4 4 C 1.50703 * 109.47030 * 120.00173 * 2 1 3 5 5 C 1.38234 * 119.94295 * 65.00007 * 4 2 1 6 6 C 1.38187 * 120.07316 * 180.02562 * 5 4 2 7 7 C 1.38668 * 119.95351 * 359.97157 * 6 5 4 8 8 O 1.35922 * 120.06205 * 179.97438 * 7 6 5 9 9 C 1.42903 * 116.99586 * 0.02562 * 8 7 6 10 10 C 1.50698 * 109.46945 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00156 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99895 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99944 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85195 * 23.80084 * 13 12 10 15 15 C 1.53781 * 113.61533 * 154.99927 * 13 12 10 16 16 C 1.53784 * 87.08189 * 140.06217 * 15 13 12 17 17 H 1.09002 * 113.61086 * 89.19922 * 16 15 13 18 18 C 1.50694 * 113.61308 * 220.01826 * 16 15 13 19 19 N 1.30179 * 126.80308 * 265.02355 * 18 16 15 20 20 O 1.20917 * 111.60766 * 179.97438 * 19 18 16 21 21 C 1.34044 * 111.56675 * 359.97438 * 20 19 18 22 22 C 1.35449 * 106.44438 * 0.02562 * 21 20 19 23 23 C 1.53782 * 87.08132 * 334.56596 * 16 15 13 24 24 C 1.38836 * 119.88549 * 0.26227 * 7 6 5 25 25 Br 1.89097 * 120.03934 * 179.72268 * 24 7 6 26 26 C 1.38198 * 119.92376 * 359.48587 * 24 7 6 27 27 H 0.96702 * 113.99336 * 59.99967 * 1 2 3 28 28 H 1.08997 * 109.46921 * 240.00062 * 2 1 3 29 29 H 1.48497 * 110.00311 * 298.67980 * 3 2 1 30 30 H 1.48499 * 109.99817 * 60.00137 * 3 2 1 31 31 H 1.08002 * 119.96213 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.02138 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47501 * 59.99738 * 9 8 7 34 34 H 1.09004 * 109.46632 * 299.99957 * 9 8 7 35 35 H 0.96999 * 120.00102 * 359.97438 * 12 10 9 36 36 H 1.09000 * 113.61549 * 25.51148 * 15 13 12 37 37 H 1.09002 * 113.68887 * 254.62136 * 15 13 12 38 38 H 1.07999 * 126.77991 * 179.73774 * 21 20 19 39 39 H 1.07997 * 128.00636 * 179.97438 * 22 21 20 40 40 H 1.09005 * 113.61436 * 139.97775 * 23 16 15 41 41 H 1.08998 * 113.61670 * 270.88553 * 23 16 15 42 42 H 1.07997 * 119.97800 * 180.27782 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6841 -2.0603 1.3971 6 6 2.1430 -2.7143 2.5246 7 6 2.8528 -2.0157 3.4895 8 8 3.3048 -2.6567 4.5996 9 6 3.0129 -4.0515 4.7073 10 6 3.5878 -4.5871 5.9933 11 8 4.1887 -3.8474 6.7434 12 7 3.4350 -5.8883 6.3092 13 6 3.9944 -6.4092 7.5591 14 1 4.1324 -5.6366 8.3155 15 6 3.2719 -7.6617 8.0825 16 6 4.6588 -8.2067 8.4627 17 1 4.9777 -7.9266 9.4667 18 6 4.8261 -9.6783 8.1847 19 7 4.6496 -10.6559 9.0259 20 8 4.8586 -11.7297 8.5109 21 6 5.2104 -11.5989 7.2241 22 6 5.2049 -10.2708 6.9582 23 6 5.2302 -7.3022 7.3580 24 6 3.0959 -0.6590 3.3226 25 35 4.0567 0.2995 4.6394 26 6 2.6393 -0.0110 2.1907 27 1 -0.3932 0.4417 -0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5880 2.4586 -1.2242 30 1 1.5615 2.4678 1.2085 31 1 1.1309 -2.6041 0.6457 32 1 1.9489 -3.7688 2.6542 33 1 3.4541 -4.5813 3.8632 34 1 1.9327 -4.1979 4.7038 35 1 2.9547 -6.4800 5.7091 36 1 2.7754 -8.2378 7.3017 37 1 2.6281 -7.4693 8.9408 38 1 5.4550 -12.3950 6.5365 39 1 5.4365 -9.7784 6.0253 40 1 6.1678 -6.8181 7.6315 41 1 5.2691 -7.7799 6.3791 42 1 2.8318 1.0434 2.0578 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_6201210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:51:00 Heat of formation + Delta-G solvation = 30.463808 kcal Electronic energy + Delta-G solvation = -28576.826814 eV Core-core repulsion = 24154.206293 eV Total energy + Delta-G solvation = -4422.620521 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.040 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.87968 -41.71295 -41.04648 -39.73390 -38.86456 -37.39006 -35.38434 -33.97495 -33.50302 -32.56267 -32.21938 -30.53112 -29.66462 -26.89530 -26.82223 -26.17933 -24.21093 -23.86616 -22.54836 -22.10290 -21.60220 -20.76102 -19.54825 -18.77880 -18.59040 -18.48057 -18.30296 -17.52450 -17.41739 -17.03321 -16.78720 -16.34930 -16.03450 -15.85974 -15.57318 -15.42631 -15.04759 -14.50837 -14.39084 -14.19069 -14.05503 -13.94630 -13.82769 -13.71140 -13.60169 -13.38270 -12.82237 -12.52358 -12.39478 -12.29955 -12.12924 -11.93378 -11.90645 -11.75927 -11.74368 -11.20856 -10.99770 -10.85035 -10.54682 -10.49615 -10.15356 -9.98921 -9.30172 -4.96180 -0.01910 0.08917 0.63545 0.63992 1.27056 1.29180 1.42171 1.45445 1.54871 1.92002 2.37769 2.46332 2.53802 3.14269 3.31146 3.32933 3.49372 3.54965 3.66947 3.69358 3.80445 3.85597 3.89111 4.01884 4.06111 4.08210 4.10124 4.31357 4.33464 4.40824 4.48444 4.59412 4.66892 4.67117 4.74518 4.77644 4.80825 4.89901 4.96889 5.04395 5.13292 5.19414 5.32004 5.44485 5.49656 6.07122 6.46288 6.60053 7.14557 7.37577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.065 4.065 3 Si 0.730 3.270 4 C -0.114 4.114 5 C -0.033 4.033 6 C -0.194 4.194 7 C 0.150 3.850 8 O -0.304 6.304 9 C 0.032 3.968 10 C 0.514 3.486 11 O -0.567 6.567 12 N -0.697 5.697 13 C 0.126 3.874 14 H 0.098 0.902 15 C -0.119 4.119 16 C -0.040 4.040 17 H 0.100 0.900 18 C 0.020 3.980 19 N -0.407 5.407 20 O 0.077 5.923 21 C -0.048 4.048 22 C -0.238 4.238 23 C -0.129 4.129 24 C -0.141 4.141 25 Br -0.050 7.050 26 C -0.059 4.059 27 H 0.397 0.603 28 H 0.110 0.890 29 H -0.278 1.278 30 H -0.304 1.304 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.256 0.744 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 -7.140 -10.402 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.175 4.175 3 Si 0.637 3.363 4 C -0.115 4.115 5 C -0.052 4.052 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.216 6.216 9 C -0.045 4.045 10 C 0.300 3.700 11 O -0.445 6.445 12 N -0.351 5.351 13 C 0.021 3.979 14 H 0.116 0.884 15 C -0.158 4.158 16 C -0.060 4.060 17 H 0.118 0.882 18 C -0.139 4.139 19 N -0.113 5.113 20 O 0.014 5.986 21 C -0.128 4.128 22 C -0.259 4.259 23 C -0.168 4.168 24 C -0.221 4.221 25 Br 0.036 6.964 26 C -0.078 4.078 27 H 0.248 0.752 28 H 0.128 0.872 29 H -0.205 1.205 30 H -0.232 1.232 31 H 0.177 0.823 32 H 0.194 0.806 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.261 0.739 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.272 0.728 39 H 0.215 0.785 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.590 -5.734 -7.364 9.352 hybrid contribution -1.214 -0.074 -1.316 1.792 sum -1.804 -5.808 -8.680 10.598 Atomic orbital electron populations 1.86539 1.18188 1.80470 1.51322 1.24638 0.84158 1.10236 0.98449 0.94428 0.91036 0.74130 0.76722 1.19332 1.00942 0.94976 0.96267 1.21246 0.94211 0.93066 0.96651 1.21619 1.02549 1.02476 0.94644 1.18775 0.93683 0.90448 0.86889 1.86245 1.73367 1.23516 1.38511 1.22866 1.03896 0.80418 0.97364 1.20530 0.79425 0.82668 0.87377 1.90793 1.42552 1.58476 1.52689 1.45595 1.57553 1.08772 1.23177 1.22336 0.94499 0.94410 0.86705 0.88399 1.23337 0.95413 0.94750 1.02267 1.20696 0.99076 0.85453 1.00791 0.88168 1.23750 1.01684 0.97018 0.91426 1.73883 1.21134 0.92355 1.23969 1.84819 1.63526 1.26443 1.23828 1.26913 0.99591 1.00523 0.85812 1.23053 1.08559 0.93666 1.00604 1.23520 0.98227 0.95645 0.99376 1.21090 1.09595 0.93184 0.98192 1.96759 1.73270 1.73507 1.52905 1.20894 0.96048 0.99829 0.91021 0.75245 0.87240 1.20488 1.23203 0.82324 0.80599 0.84796 0.85474 0.73891 0.87420 0.90229 0.72802 0.78500 0.90937 0.86923 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.54 12.81 -148.98 -1.91 -1.37 16 2 C -0.06 0.21 2.79 71.24 0.20 0.41 16 3 Si 0.73 -1.15 29.84 68.60 2.05 0.90 16 4 C -0.11 0.02 5.38 -19.85 -0.11 -0.09 16 5 C -0.03 0.12 9.68 22.26 0.22 0.33 16 6 C -0.19 0.81 9.04 22.36 0.20 1.01 16 7 C 0.15 0.41 6.68 22.52 0.15 0.57 16 8 O -0.30 -1.38 9.01 -73.63 -0.66 -2.04 16 9 C 0.03 -0.18 5.22 71.24 0.37 0.19 16 10 C 0.51 0.30 7.91 87.66 0.69 0.99 16 11 O -0.57 -7.32 16.10 16.01 0.26 -7.06 16 12 N -0.70 4.64 5.36 -440.03 -2.36 2.28 16 13 C 0.13 -0.43 4.24 45.52 0.19 -0.24 16 14 H 0.10 0.21 7.46 -2.39 -0.02 0.19 16 15 C -0.12 0.61 7.38 31.12 0.23 0.84 16 16 C -0.04 0.08 4.29 -11.01 -0.05 0.03 16 17 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 18 C 0.02 0.02 6.70 43.57 0.29 0.31 16 19 N -0.41 -2.70 12.07 -49.55 -0.60 -3.30 16 20 O 0.08 0.24 11.20 71.60 0.80 1.04 16 21 C -0.05 0.26 12.30 67.17 0.83 1.09 16 22 C -0.24 1.21 10.28 22.40 0.23 1.44 16 23 C -0.13 0.61 7.27 31.12 0.23 0.84 16 24 C -0.14 -0.84 6.24 22.40 0.14 -0.70 16 25 Br -0.05 -0.46 33.16 -20.37 -0.68 -1.14 16 26 C -0.06 -0.19 8.40 22.27 0.19 0.00 16 27 H 0.40 -3.42 8.74 -74.06 -0.65 -4.07 16 28 H 0.11 -0.97 7.96 -2.39 -0.02 -0.99 16 29 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 30 H -0.30 -2.17 7.05 99.48 0.70 -1.47 16 31 H 0.16 -1.29 8.06 -2.91 -0.02 -1.31 16 32 H 0.18 -2.19 6.30 -2.91 -0.02 -2.21 16 33 H 0.13 -1.76 7.66 -2.39 -0.02 -1.78 16 34 H 0.13 -1.50 7.66 -2.38 -0.02 -1.52 16 35 H 0.42 -6.19 8.73 -92.71 -0.81 -7.00 16 36 H 0.11 -0.90 8.07 -2.39 -0.02 -0.92 16 37 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.26 -3.86 8.06 -2.91 -0.02 -3.88 16 39 H 0.20 -2.27 7.12 -2.91 -0.02 -2.29 16 40 H 0.07 -0.16 8.14 -2.38 -0.02 -0.17 16 41 H 0.11 -1.01 6.62 -2.39 -0.02 -1.03 16 42 H 0.14 0.29 4.86 -2.91 -0.01 0.27 16 Total: 0.00 -32.55 379.22 0.59 -31.96 By element: Atomic # 1 Polarization: -27.96 SS G_CDS: -0.32 Total: -28.28 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.00 Total: 7.01 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -2.96 Total: -1.02 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.51 Total: -9.43 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.05 Total: 0.90 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.68 Total: -1.14 kcal Total: -32.55 0.59 -31.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_6201210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.420 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds