Wall clock time and date at job start Sun Mar 7 2021 09:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36767 * 125.80571 * 2 1 4 4 C 1.47264 * 126.94253 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99852 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99939 * 180.02562 * 6 4 3 8 8 H 1.09001 * 112.85136 * 336.18822 * 7 6 4 9 9 C 1.53775 * 113.69694 * 107.46162 * 7 6 4 10 10 C 1.53780 * 87.08433 * 139.98871 * 9 7 6 11 11 H 1.09004 * 113.68680 * 89.13095 * 10 9 7 12 12 C 1.50693 * 113.61683 * 220.02138 * 10 9 7 13 13 N 1.30173 * 126.80325 * 192.52349 * 12 10 9 14 14 O 1.20923 * 111.60616 * 179.97438 * 13 12 10 15 15 C 1.34042 * 111.56962 * 0.02562 * 14 13 12 16 16 C 1.35449 * 106.44291 * 359.97438 * 15 14 13 17 17 C 1.53779 * 87.08039 * 334.57137 * 10 9 7 18 18 C 1.46678 * 106.11565 * 180.24847 * 3 2 1 19 19 C 1.34492 * 106.33548 * 359.62115 * 18 3 2 20 20 C 1.50702 * 125.57649 * 180.16054 * 19 18 3 21 21 O 1.42904 * 109.47312 * 300.28075 * 20 19 18 22 22 Si 1.86294 * 109.47236 * 180.28005 * 20 19 18 23 23 N 1.34658 * 125.79642 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47025 * 89.99540 * 1 2 3 25 25 H 1.08994 * 109.47685 * 210.00211 * 1 2 3 26 26 H 1.09009 * 109.46775 * 330.00319 * 1 2 3 27 27 H 0.97004 * 119.99863 * 359.97438 * 6 4 3 28 28 H 1.09004 * 113.60786 * 25.44272 * 9 7 6 29 29 H 1.08995 * 113.61916 * 254.54235 * 9 7 6 30 30 H 1.07997 * 126.77638 * 179.97438 * 15 14 13 31 31 H 1.08004 * 128.00729 * 180.02562 * 16 15 14 32 32 H 1.09003 * 113.61637 * 139.97784 * 17 10 9 33 33 H 1.09002 * 113.61576 * 270.88172 * 17 10 9 34 34 H 1.08007 * 126.83835 * 179.74918 * 18 3 2 35 35 H 1.08996 * 109.46802 * 60.27604 * 20 19 18 36 36 H 0.96706 * 113.99332 * 300.00240 * 21 20 19 37 37 H 1.48501 * 110.00243 * 180.02562 * 22 20 19 38 38 H 1.48509 * 109.99852 * 301.31877 * 22 20 19 39 39 H 0.97000 * 124.84925 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8704 2.5156 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7852 3.5053 -0.0010 7 6 2.3508 4.9043 -0.0009 8 1 1.3474 5.0360 -0.4061 9 6 2.5715 5.6200 1.3421 10 6 3.0046 6.8495 0.5263 11 1 2.1809 7.5138 0.2648 12 6 4.1821 7.5815 1.1166 13 7 4.6157 8.7616 0.7789 14 8 5.5807 9.0850 1.4320 15 6 5.9216 8.1332 2.3121 16 6 5.0346 7.1229 2.1470 17 6 3.3874 5.8713 -0.5969 18 6 3.6882 0.6150 -0.0061 19 6 3.6095 -0.7276 -0.0007 20 6 4.7818 -1.6746 -0.0005 21 8 5.5759 -1.4499 -1.1672 22 14 4.1613 -3.4311 -0.0005 23 7 2.2947 -1.0922 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 3.7314 3.2912 -0.0006 28 1 3.3740 5.1881 1.9402 29 1 1.6545 5.7742 1.9107 30 1 6.7416 8.1655 3.0142 31 1 4.9890 6.1843 2.6794 32 1 3.1289 6.2284 -1.5938 33 1 4.4129 5.5082 -0.5290 34 1 4.5891 1.2107 -0.0116 35 1 5.3872 -1.5030 0.8895 36 1 5.1004 -1.5846 -1.9984 37 1 5.3078 -4.3749 0.0003 38 1 3.3080 -3.6683 1.1916 39 1 1.9732 -2.0074 -0.0013 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_9865296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:51:39 Heat of formation + Delta-G solvation = 67.433839 kcal Electronic energy + Delta-G solvation = -24072.011172 eV Core-core repulsion = 20372.294217 eV Total energy + Delta-G solvation = -3699.716956 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.83897 -42.51306 -40.86527 -39.11132 -37.84626 -35.22418 -33.85984 -32.82533 -32.57381 -31.97847 -29.01125 -27.14533 -26.84978 -25.48119 -24.11549 -23.41740 -21.98006 -21.49759 -21.10154 -20.19855 -18.81778 -18.72315 -18.39993 -17.76278 -17.19564 -16.94823 -16.61352 -16.23877 -15.87621 -15.67963 -15.36347 -14.96526 -14.67097 -14.54814 -14.33207 -14.14625 -13.87698 -13.76278 -13.60303 -13.43786 -13.40424 -12.77327 -12.68681 -12.62963 -12.30816 -12.29463 -11.91634 -11.67346 -10.89912 -10.81628 -10.55882 -10.51239 -10.02445 -9.81558 -9.16604 -5.35611 0.59438 0.75748 0.97462 1.19433 1.28154 1.34153 1.69322 1.95761 2.34808 2.43857 2.62984 3.15326 3.24930 3.32714 3.54667 3.59045 3.70203 3.80665 3.88377 3.97998 4.11382 4.17543 4.22979 4.31348 4.41611 4.47245 4.59484 4.62974 4.67796 4.68344 4.73189 4.75393 4.91945 4.94784 4.99145 5.04756 5.18622 5.30412 5.62359 5.69365 5.84322 6.28802 6.39167 6.69972 7.36567 7.46702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.125 3.875 3 C -0.242 4.242 4 C 0.595 3.405 5 O -0.548 6.548 6 N -0.717 5.717 7 C 0.129 3.871 8 H 0.121 0.879 9 C -0.140 4.140 10 C -0.035 4.035 11 H 0.112 0.888 12 C 0.030 3.970 13 N -0.363 5.363 14 O 0.099 5.901 15 C -0.056 4.056 16 C -0.233 4.233 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.029 4.029 20 C -0.033 4.033 21 O -0.534 6.534 22 Si 0.672 3.328 23 N -0.545 5.545 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.401 0.599 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.217 0.783 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.381 0.619 37 H -0.244 1.244 38 H -0.252 1.252 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -4.695 0.240 4.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.006 3.994 3 C -0.252 4.252 4 C 0.384 3.616 5 O -0.427 6.427 6 N -0.367 5.367 7 C 0.023 3.977 8 H 0.139 0.861 9 C -0.179 4.179 10 C -0.055 4.055 11 H 0.131 0.869 12 C -0.129 4.129 13 N -0.066 5.066 14 O 0.032 5.968 15 C -0.138 4.138 16 C -0.254 4.254 17 C -0.172 4.172 18 C -0.153 4.153 19 C -0.137 4.137 20 C -0.145 4.145 21 O -0.338 6.338 22 Si 0.573 3.427 23 N -0.145 5.145 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.236 0.764 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.234 0.766 31 H 0.188 0.812 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.229 0.771 37 H -0.167 1.167 38 H -0.177 1.177 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.567 -4.374 0.202 4.415 hybrid contribution 0.889 -0.750 1.020 1.547 sum 1.456 -5.123 1.223 5.465 Atomic orbital electron populations 1.20660 0.86524 1.04570 1.03949 1.20415 0.93798 0.85259 0.99930 1.20102 0.93038 0.92035 1.19996 1.17350 0.85288 0.84062 0.74852 1.90753 1.16593 1.84363 1.50955 1.45701 1.09731 1.05278 1.75954 1.22389 0.99776 0.79214 0.96274 0.86145 1.23555 1.02613 0.94285 0.97488 1.20702 0.93610 0.94213 0.96939 0.86949 1.23409 0.99906 0.92174 0.97439 1.73873 1.00840 1.15915 1.15976 1.84870 1.34892 1.39529 1.37465 1.26086 1.02114 0.88808 0.96765 1.22710 0.97652 1.02865 1.02214 1.23397 0.99913 0.95140 0.98710 1.21780 0.95650 0.92591 1.05242 1.20538 0.84362 0.95724 1.13125 1.24404 0.91723 1.06534 0.91847 1.86547 1.39002 1.93004 1.15295 0.95378 0.84214 0.75643 0.87471 1.41720 1.05555 1.08467 1.58742 0.89898 0.91522 0.87782 0.76426 0.89147 0.90077 0.76646 0.81187 0.89865 0.89244 0.83604 0.85780 0.77131 1.16717 1.17684 0.74762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.05 9.88 36.01 0.36 0.41 16 2 C 0.12 0.06 7.17 -81.88 -0.59 -0.53 16 3 C -0.24 -0.38 6.29 -103.36 -0.65 -1.03 16 4 C 0.59 1.65 7.81 -12.59 -0.10 1.55 16 5 O -0.55 -3.09 14.41 5.25 0.08 -3.01 16 6 N -0.72 -0.07 5.35 -54.15 -0.29 -0.36 16 7 C 0.13 -0.02 4.24 -67.12 -0.28 -0.30 16 8 H 0.12 0.14 7.46 -51.93 -0.39 -0.24 16 9 C -0.14 0.10 7.27 -25.92 -0.19 -0.08 16 10 C -0.04 0.00 4.29 -90.96 -0.39 -0.39 16 11 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 12 C 0.03 0.05 6.70 -82.10 -0.55 -0.50 16 13 N -0.36 -1.37 12.07 33.42 0.40 -0.97 16 14 O 0.10 0.22 11.20 17.17 0.19 0.42 16 15 C -0.06 0.06 12.30 29.74 0.37 0.42 16 16 C -0.23 0.11 10.28 -39.38 -0.40 -0.29 16 17 C -0.13 0.12 7.38 -25.92 -0.19 -0.07 16 18 C -0.13 -0.01 10.43 -37.50 -0.39 -0.40 16 19 C -0.03 0.03 6.11 -81.86 -0.50 -0.47 16 20 C -0.03 0.06 2.98 36.01 0.11 0.17 16 21 O -0.53 0.72 12.87 -35.23 -0.45 0.27 16 22 Si 0.67 -2.01 30.94 -169.99 -5.26 -7.27 16 23 N -0.55 0.83 5.41 -5.42 -0.03 0.81 16 24 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 0.16 6.47 -51.92 -0.34 -0.17 16 27 H 0.40 -0.74 7.85 -40.82 -0.32 -1.06 16 28 H 0.09 -0.13 6.62 -51.93 -0.34 -0.48 16 29 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.22 -1.13 8.06 -52.49 -0.42 -1.55 16 31 H 0.17 -0.46 7.12 -52.48 -0.37 -0.84 16 32 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.09 -0.12 8.07 -51.93 -0.42 -0.54 16 34 H 0.15 -0.19 7.70 -52.48 -0.40 -0.59 16 35 H 0.13 -0.21 7.96 -51.93 -0.41 -0.62 16 36 H 0.38 -1.87 8.70 45.56 0.40 -1.48 16 37 H -0.24 -0.12 7.11 56.52 0.40 0.29 16 38 H -0.25 0.22 7.11 56.52 0.40 0.62 16 39 H 0.41 -1.66 6.70 -40.82 -0.27 -1.93 16 LS Contribution 333.01 15.07 5.02 5.02 Total: 0.00 -9.33 333.01 -8.36 -17.68 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: -4.61 Total: -11.05 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.41 Total: -1.53 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: 0.08 Total: -0.53 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: -0.19 Total: -2.33 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: -5.26 Total: -7.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -9.33 -8.36 -17.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_9865296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.119 kcal (2) G-P(sol) polarization free energy of solvation -9.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds