Wall clock time and date at job start Sun Mar 7 2021 14:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99949 * 2 1 4 4 O 1.20817 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99964 * 179.97438 * 3 2 1 6 6 N 1.46502 * 108.89276 * 36.35376 * 5 3 2 7 7 C 1.34782 * 119.99961 * 298.64577 * 6 5 3 8 8 O 1.21553 * 120.00149 * 0.02562 * 7 6 5 9 9 C 1.47841 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.39992 * 120.55652 * 179.72225 * 9 7 6 11 11 C 1.38398 * 118.28797 * 179.76097 * 10 9 7 12 12 C 1.50692 * 120.34845 * 180.24070 * 11 10 9 13 13 O 1.42898 * 109.47063 * 300.25782 * 12 11 10 14 14 Si 1.86306 * 109.47226 * 180.25607 * 12 11 10 15 15 H 1.48500 * 109.46731 * 59.99876 * 14 12 11 16 16 H 1.48494 * 109.47423 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47045 * 300.00261 * 14 12 11 18 18 C 1.38308 * 119.30030 * 0.49371 * 11 10 9 19 19 N 1.31955 * 121.08476 * 359.77139 * 18 11 10 20 20 C 1.31662 * 121.88220 * 359.97438 * 19 18 11 21 21 C 1.52592 * 108.91184 * 277.80310 * 5 3 2 22 22 C 1.54357 * 109.20435 * 161.49181 * 21 5 3 23 23 Si 1.85210 * 107.07298 * 56.71929 * 22 21 5 24 24 C 1.87760 * 111.38920 * 193.19917 * 23 22 21 25 25 C 1.56402 * 98.97167 * 221.43168 * 24 23 22 26 26 C 1.53783 * 109.77671 * 39.37266 * 25 24 23 27 27 C 1.55698 * 111.39507 * 312.18812 * 26 25 24 28 28 C 1.85195 * 110.01302 * 317.21978 * 23 22 21 29 29 C 1.52587 * 108.91376 * 154.99763 * 5 3 2 30 30 H 1.09001 * 109.46811 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47196 * 300.00355 * 1 2 3 32 32 H 1.08997 * 109.46803 * 60.00345 * 1 2 3 33 33 H 0.96995 * 120.00451 * 118.63977 * 6 5 3 34 34 H 1.08000 * 120.85423 * 359.97438 * 10 9 7 35 35 H 1.09000 * 109.47467 * 60.25893 * 12 11 10 36 36 H 0.96696 * 113.99707 * 299.99727 * 13 12 11 37 37 H 1.08003 * 119.45833 * 179.74510 * 18 11 10 38 38 H 1.08000 * 119.72065 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.51768 * 41.57589 * 21 5 3 40 40 H 1.08996 * 109.51709 * 281.41027 * 21 5 3 41 41 H 1.08996 * 109.93604 * 297.32900 * 22 21 5 42 42 H 1.09005 * 109.93798 * 176.10893 * 22 21 5 43 43 H 1.09005 * 111.49601 * 338.87614 * 24 23 22 44 44 H 1.08997 * 111.49516 * 103.99043 * 24 23 22 45 45 H 1.08999 * 109.42403 * 279.27436 * 25 24 23 46 46 H 1.09008 * 109.41857 * 159.46186 * 25 24 23 47 47 H 1.09000 * 109.10214 * 191.68376 * 26 25 24 48 48 H 1.08995 * 109.10876 * 72.69452 * 26 25 24 49 49 H 1.09004 * 111.14466 * 270.09792 * 27 26 25 50 50 H 1.08999 * 111.14573 * 145.89015 * 27 26 25 51 51 H 1.09002 * 109.93795 * 162.17204 * 28 23 22 52 52 H 1.09005 * 109.93568 * 283.38626 * 28 23 22 53 53 H 1.08999 * 109.51672 * 78.58667 * 29 5 3 54 54 H 1.09005 * 109.51481 * 318.42242 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.0988 0.1848 -0.8206 7 6 3.8542 -1.0964 -0.4808 8 8 3.1914 -1.3473 0.5068 9 6 4.3911 -2.1964 -1.3099 10 6 4.1490 -3.5313 -0.9645 11 6 4.6697 -4.5236 -1.7766 12 6 4.4330 -5.9759 -1.4515 13 8 4.9710 -6.2687 -0.1604 14 14 5.2693 -7.0428 -2.7294 15 1 6.7284 -6.7664 -2.7268 16 1 5.0366 -8.4739 -2.4087 17 1 4.7102 -6.7384 -4.0710 18 6 5.4141 -4.1684 -2.8869 19 7 5.6308 -2.9014 -3.1849 20 6 5.1527 -1.9217 -2.4466 21 6 4.0699 1.1054 1.4310 22 6 5.5644 0.7202 1.4009 23 14 6.4489 2.0470 0.4588 24 6 8.1914 1.5170 0.0022 25 6 8.9397 2.8581 0.2984 26 6 8.3663 3.5039 1.5708 27 6 6.8099 3.5348 1.5401 28 6 5.4712 2.5180 -1.0418 29 6 3.9920 2.6071 -0.6096 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.6273 0.3849 -1.6089 34 1 3.5680 -3.7803 -0.0889 35 1 3.3620 -6.1788 -1.4533 36 1 5.9221 -6.1110 -0.0857 37 1 5.8251 -4.9408 -3.5201 38 1 5.3511 -0.8968 -2.7232 39 1 3.5011 0.3185 1.9265 40 1 3.9463 2.0423 1.9740 41 1 5.6909 -0.2391 0.8991 42 1 5.9541 0.6633 2.4173 43 1 8.5454 0.7115 0.6457 44 1 8.2628 1.2439 -1.0505 45 1 8.8107 3.5386 -0.5432 46 1 10.0015 2.6567 0.4411 47 1 8.7417 4.5239 1.6534 48 1 8.6946 2.9334 2.4395 49 1 6.4438 4.4529 1.0805 50 1 6.3943 3.4048 2.5393 51 1 5.8078 3.4848 -1.4164 52 1 5.5874 1.7582 -1.8147 53 1 3.8758 3.3998 0.1294 54 1 3.3711 2.8245 -1.4787 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339704_13287814.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:42:17 Heat of formation + Delta-G solvation = -134.372620 kcal Electronic energy + Delta-G solvation = -36966.608739 eV Core-core repulsion = 32413.602557 eV Total energy + Delta-G solvation = -4553.006182 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 392.177 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.54998 -41.58045 -40.30414 -38.30421 -37.90038 -37.27413 -36.11095 -34.11981 -33.70361 -32.41420 -32.33385 -29.65006 -29.59459 -27.79739 -27.22455 -25.74963 -24.80762 -23.81428 -23.74158 -23.04405 -22.05335 -21.00529 -20.52675 -19.42173 -19.02132 -18.24477 -17.98148 -17.86168 -17.60294 -17.36902 -16.46768 -16.44340 -16.12455 -15.98594 -15.82148 -15.58281 -15.34714 -14.97857 -14.91959 -14.81343 -14.72146 -14.35265 -14.20925 -14.16856 -14.06344 -13.60194 -13.46270 -13.37772 -13.21535 -12.98625 -12.91369 -12.68088 -12.44681 -12.33510 -12.28190 -12.13747 -12.09306 -12.01907 -11.94586 -11.82952 -11.64094 -11.31529 -11.23767 -11.01474 -10.57174 -10.53516 -10.44110 -10.31069 -10.23934 -10.17549 -10.13284 -0.53387 0.02104 0.93005 1.13045 1.47485 1.51640 1.55986 1.76518 1.80467 1.87694 1.89834 1.96063 1.97442 2.66094 2.68840 3.08991 3.32662 3.41916 3.49145 3.61001 3.68689 3.70575 3.77278 3.79768 4.14658 4.15580 4.16808 4.17535 4.18763 4.22164 4.29927 4.31845 4.39167 4.45477 4.47433 4.60347 4.60732 4.69137 4.73104 4.79896 4.88926 4.94860 4.99602 5.07039 5.07629 5.14979 5.16631 5.18095 5.25263 5.31471 5.36015 5.38414 5.41692 5.42884 5.59028 5.59747 6.35229 6.59059 6.64694 6.68741 7.11013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.450 3.550 4 O -0.531 6.531 5 C 0.197 3.803 6 N -0.707 5.707 7 C 0.565 3.435 8 O -0.519 6.519 9 C -0.189 4.189 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.077 4.077 13 O -0.550 6.550 14 Si 0.977 3.023 15 H -0.243 1.243 16 H -0.271 1.271 17 H -0.249 1.249 18 C 0.114 3.886 19 N -0.493 5.493 20 C 0.140 3.860 21 C -0.119 4.119 22 C -0.408 4.408 23 Si 1.048 2.952 24 C -0.412 4.412 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.422 4.422 28 C -0.408 4.408 29 C -0.104 4.104 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.418 0.582 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.390 0.610 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.111 0.889 52 H 0.099 0.901 53 H 0.099 0.901 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -0.210 -3.572 5.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.249 6.249 3 C 0.292 3.708 4 O -0.420 6.420 5 C 0.108 3.892 6 N -0.367 5.367 7 C 0.352 3.648 8 O -0.395 6.395 9 C -0.194 4.194 10 C -0.021 4.021 11 C -0.177 4.177 12 C -0.187 4.187 13 O -0.357 6.357 14 Si 0.800 3.200 15 H -0.166 1.166 16 H -0.196 1.196 17 H -0.173 1.173 18 C -0.042 4.042 19 N -0.201 5.201 20 C -0.019 4.019 21 C -0.157 4.157 22 C -0.492 4.492 23 Si 1.238 2.762 24 C -0.498 4.498 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.507 4.507 28 C -0.494 4.494 29 C -0.141 4.141 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.240 0.760 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.129 0.871 52 H 0.118 0.882 53 H 0.117 0.883 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.539 -0.597 -4.098 5.447 hybrid contribution -0.523 0.381 1.065 1.246 sum 3.016 -0.216 -3.033 4.282 Atomic orbital electron populations 1.23446 0.76440 1.04842 1.02166 1.86857 1.23466 1.32126 1.82475 1.24776 0.93068 0.81541 0.71376 1.90668 1.67520 1.37213 1.46648 1.20399 0.83845 0.90163 0.94751 1.46049 1.56019 1.03898 1.30719 1.18070 0.79478 0.82742 0.84484 1.90818 1.37687 1.83735 1.27225 1.20997 1.04565 0.94442 0.99433 1.21634 0.92631 0.90529 0.97335 1.21434 1.00837 0.98191 0.97249 1.25034 1.06036 0.93583 0.94079 1.86527 1.29409 1.89207 1.30605 0.85287 0.80080 0.78070 0.76593 1.16634 1.19620 1.17327 1.23148 0.92915 0.94138 0.93986 1.67771 1.21103 1.00575 1.30615 1.23459 0.89851 1.00147 0.88410 1.21721 0.98117 1.03529 0.92341 1.26425 0.99738 1.13123 1.09938 0.78902 0.65579 0.65431 0.66246 1.26744 1.18525 0.98981 1.05560 1.22072 1.00145 0.96446 0.97747 1.21903 0.95368 1.00759 0.98230 1.26704 0.98360 1.15397 1.10241 1.26320 1.00069 1.08618 1.14434 1.21577 0.98022 0.92152 1.02396 0.86520 0.92318 0.91945 0.73931 0.83796 0.85393 0.76048 0.81422 0.79283 0.91370 0.89180 0.90711 0.89924 0.90840 0.88987 0.90832 0.92326 0.92372 0.92596 0.89825 0.90638 0.87083 0.88224 0.88301 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.56 113.37 1.20 1.30 16 2 O -0.33 -2.75 6.78 -43.73 -0.30 -3.05 16 3 C 0.45 3.22 6.47 71.24 0.46 3.68 16 4 O -0.53 -6.12 15.87 21.99 0.35 -5.77 16 5 C 0.20 -0.02 0.62 2.58 0.00 -0.01 16 6 N -0.71 2.24 3.43 -430.42 -1.48 0.76 16 7 C 0.57 1.02 5.31 86.78 0.46 1.48 16 8 O -0.52 -4.46 11.78 19.43 0.23 -4.23 16 9 C -0.19 0.07 5.89 -19.99 -0.12 -0.05 16 10 C 0.01 0.00 9.31 22.73 0.21 0.22 16 11 C -0.17 0.32 5.39 -19.81 -0.11 0.21 16 12 C -0.08 0.29 2.83 71.23 0.20 0.49 16 13 O -0.55 0.95 12.77 -148.98 -1.90 -0.95 16 14 Si 0.98 -4.51 25.10 68.60 1.72 -2.78 16 15 H -0.24 1.27 7.11 99.48 0.71 1.97 16 16 H -0.27 0.13 7.11 99.48 0.71 0.84 16 17 H -0.25 1.01 7.11 99.48 0.71 1.71 16 18 C 0.11 -0.19 9.84 84.69 0.83 0.65 16 19 N -0.49 0.10 10.35 -194.76 -2.01 -1.91 16 20 C 0.14 -0.47 10.71 85.04 0.91 0.44 16 21 C -0.12 -0.08 4.13 30.92 0.13 0.05 16 22 C -0.41 1.20 4.68 72.44 0.34 1.54 16 23 Si 1.05 -8.22 10.16 68.60 0.70 -7.52 16 24 C -0.41 2.42 5.94 73.17 0.43 2.85 16 25 C -0.13 0.46 5.97 32.04 0.19 0.65 16 26 C -0.12 0.29 6.10 31.79 0.19 0.48 16 27 C -0.42 1.78 5.84 72.91 0.43 2.21 16 28 C -0.41 4.05 4.69 72.44 0.34 4.39 16 29 C -0.10 0.47 4.27 30.92 0.13 0.60 16 30 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 32 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 33 H 0.42 -4.01 4.29 -92.71 -0.40 -4.41 16 34 H 0.14 0.39 7.74 -2.91 -0.02 0.37 16 35 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 36 H 0.39 -3.24 8.70 -74.06 -0.64 -3.89 16 37 H 0.17 -0.84 4.88 -2.91 -0.01 -0.86 16 38 H 0.19 -2.07 6.42 -2.91 -0.02 -2.09 16 39 H 0.07 0.45 6.47 -2.39 -0.02 0.43 16 40 H 0.09 -0.13 7.76 -2.39 -0.02 -0.15 16 41 H 0.07 -0.14 6.11 -2.39 -0.01 -0.16 16 42 H 0.08 -0.20 7.97 -2.38 -0.02 -0.22 16 43 H 0.07 -0.32 8.04 -2.38 -0.02 -0.34 16 44 H 0.09 -0.75 8.04 -2.39 -0.02 -0.77 16 45 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 47 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.08 -0.42 8.03 -2.39 -0.02 -0.44 16 50 H 0.07 -0.25 8.03 -2.39 -0.02 -0.27 16 51 H 0.11 -1.30 7.97 -2.39 -0.02 -1.32 16 52 H 0.10 -1.40 5.98 -2.38 -0.01 -1.41 16 53 H 0.10 -0.47 7.76 -2.39 -0.02 -0.49 16 54 H 0.08 -0.27 7.84 -2.38 -0.02 -0.29 16 Total: 0.00 -21.26 413.08 4.20 -17.06 By element: Atomic # 1 Polarization: -13.43 SS G_CDS: 0.65 Total: -12.78 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 6.24 Total: 21.17 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -3.49 Total: -1.15 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.62 Total: -14.00 kcal Atomic # 14 Polarization: -12.72 SS G_CDS: 2.42 Total: -10.30 kcal Total: -21.26 4.20 -17.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339704_13287814.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.310 kcal (2) G-P(sol) polarization free energy of solvation -21.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds