Wall clock time and date at job start Sun Mar 7 2021 15:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00112 * 2 1 4 4 O 1.20825 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00337 * 180.02562 * 3 2 1 6 6 N 1.46505 * 108.88639 * 325.00416 * 5 3 2 7 7 C 1.34775 * 120.00038 * 59.99415 * 6 5 3 8 8 O 1.21695 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.46676 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.37871 * 126.23368 * 179.97438 * 9 7 6 11 11 C 1.50706 * 126.45695 * 0.03502 * 10 9 7 12 12 C 1.39834 * 107.08437 * 179.79942 * 10 9 7 13 13 C 1.35443 * 107.86605 * 0.38266 * 12 10 9 14 14 C 1.50707 * 125.56235 * 179.88114 * 13 12 10 15 15 O 1.42903 * 109.46442 * 244.68941 * 14 13 12 16 16 Si 1.86293 * 109.47256 * 4.68507 * 14 13 12 17 17 H 1.48499 * 109.47512 * 300.00264 * 16 14 13 18 18 H 1.48505 * 109.47075 * 60.00390 * 16 14 13 19 19 H 1.48499 * 109.47038 * 180.02562 * 16 14 13 20 20 N 1.35532 * 108.87498 * 359.61106 * 13 12 10 21 21 C 1.52590 * 108.90641 * 83.62881 * 5 3 2 22 22 C 1.54221 * 109.29513 * 198.47749 * 21 5 3 23 23 Si 1.85200 * 106.98921 * 303.16001 * 22 21 5 24 24 C 1.87744 * 111.40882 * 166.95414 * 23 22 21 25 25 C 1.56406 * 98.96839 * 98.21096 * 24 23 22 26 26 C 1.53775 * 109.78279 * 39.35400 * 25 24 23 27 27 C 1.55692 * 111.40073 * 312.19491 * 26 25 24 28 28 C 1.85211 * 109.99559 * 42.91165 * 23 22 21 29 29 C 1.52591 * 108.90995 * 206.37051 * 5 3 2 30 30 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46880 * 299.99505 * 1 2 3 32 32 H 1.08992 * 109.47666 * 59.99463 * 1 2 3 33 33 H 0.97000 * 119.99569 * 240.00441 * 6 5 3 34 34 H 1.08996 * 109.46811 * 89.99864 * 11 10 9 35 35 H 1.09004 * 109.47063 * 209.99920 * 11 10 9 36 36 H 1.08999 * 109.46683 * 330.00175 * 11 10 9 37 37 H 1.08007 * 126.06539 * 180.26653 * 12 10 9 38 38 H 1.08999 * 109.47345 * 124.69011 * 14 13 12 39 39 H 0.96700 * 114.00311 * 60.00230 * 15 14 13 40 40 H 0.96994 * 125.67879 * 180.20785 * 20 13 12 41 41 H 1.08997 * 109.51604 * 318.28212 * 21 5 3 42 42 H 1.09002 * 109.50977 * 78.44124 * 21 5 3 43 43 H 1.08996 * 109.95232 * 183.79873 * 22 21 5 44 44 H 1.09002 * 109.98371 * 62.53496 * 22 21 5 45 45 H 1.09004 * 111.49845 * 215.65008 * 24 23 22 46 46 H 1.08997 * 111.49543 * 340.77008 * 24 23 22 47 47 H 1.09004 * 109.42222 * 279.25510 * 25 24 23 48 48 H 1.09005 * 109.41771 * 159.45297 * 25 24 23 49 49 H 1.09002 * 109.10098 * 191.67879 * 26 25 24 50 50 H 1.09007 * 109.10123 * 72.70454 * 26 25 24 51 51 H 1.09003 * 111.14288 * 270.10345 * 27 26 25 52 52 H 1.09006 * 111.14607 * 145.89231 * 27 26 25 53 53 H 1.08996 * 109.93837 * 197.71718 * 28 23 22 54 54 H 1.09004 * 109.93821 * 76.48791 * 28 23 22 55 55 H 1.08994 * 109.51205 * 281.55573 * 29 5 3 56 56 H 1.09007 * 109.50849 * 41.71457 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 4.0996 0.1656 0.7940 7 6 3.8316 -1.1069 0.4399 8 8 3.1470 -1.3344 -0.5402 9 6 4.3652 -2.2174 1.2357 10 6 4.1723 -3.5607 0.9924 11 6 3.3768 -4.1609 -0.1382 12 6 4.8585 -4.2614 1.9892 13 6 5.4384 -3.3541 2.8107 14 6 6.2744 -3.6771 4.0223 15 8 5.6123 -3.2049 5.1974 16 14 6.5098 -5.5213 4.1407 17 1 5.1857 -6.1826 4.2624 18 1 7.1978 -6.0119 2.9196 19 1 7.3331 -5.8395 5.3350 20 7 5.1491 -2.1084 2.3620 21 6 4.0678 1.1411 -1.4355 22 6 5.5612 0.7565 -1.4195 23 14 6.4461 2.0628 -0.4498 24 6 8.1922 1.5280 -0.0140 25 6 8.9657 2.2680 -1.1543 26 6 8.3478 3.6570 -1.3859 27 6 6.7968 3.5776 -1.4965 28 6 5.4733 2.4945 1.0660 29 6 3.9926 2.5923 0.6407 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 4.6455 0.3470 1.5750 34 1 4.0291 -4.3206 -0.9967 35 1 2.9552 -5.1143 0.1802 36 1 2.5707 -3.4817 -0.4157 37 1 4.9144 -5.3355 2.0876 38 1 7.2463 -3.1917 3.9331 39 1 4.7393 -3.5954 5.3407 40 1 5.4447 -1.2782 2.7673 41 1 3.5000 0.3652 -1.9488 42 1 3.9409 2.0907 -1.9555 43 1 5.9478 0.7238 -2.4381 44 1 5.6908 -0.2140 -0.9404 45 1 8.4876 1.8918 0.9702 46 1 8.3091 0.4469 -0.0885 47 1 8.9016 1.6851 -2.0732 48 1 10.0119 2.3796 -0.8694 49 1 8.7502 4.0773 -2.3076 50 1 8.6131 4.3087 -0.5533 51 1 6.4837 3.4231 -2.5291 52 1 6.3264 4.4653 -1.0736 53 1 5.8098 3.4519 1.4635 54 1 5.5932 1.7155 1.8190 55 1 3.8730 3.4027 -0.0783 56 1 3.3743 2.7875 1.5169 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339704_13940406.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 15:39:13 Heat of formation + Delta-G solvation = -136.501308 kcal Electronic energy + Delta-G solvation = -38091.538395 eV Core-core repulsion = 33511.128428 eV Total energy + Delta-G solvation = -4580.409967 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 394.193 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.76215 -42.07792 -40.27762 -38.30207 -37.65829 -37.22362 -36.14235 -34.00404 -33.18479 -32.37485 -31.45445 -29.68767 -29.60364 -28.17000 -27.81685 -26.61733 -24.85049 -23.77342 -23.15635 -23.00926 -21.60681 -21.08312 -20.57807 -20.42698 -19.54906 -18.97041 -18.20058 -17.91381 -17.50102 -16.63514 -16.54247 -16.51789 -16.00127 -15.92245 -15.65298 -15.55509 -15.33367 -15.02038 -14.91645 -14.73749 -14.65634 -14.31931 -14.24032 -14.03485 -13.96930 -13.64071 -13.56570 -13.50158 -13.39710 -13.17883 -13.12479 -12.94097 -12.86308 -12.44607 -12.38309 -12.31910 -12.17917 -12.12301 -12.08907 -11.97641 -11.82246 -11.74901 -11.62429 -11.34529 -10.94873 -10.58865 -10.50044 -10.34221 -10.23342 -10.17336 -9.78686 -9.14573 0.38736 0.93595 1.13964 1.52354 1.58522 1.63136 1.65897 1.74986 1.83382 1.90292 1.92642 1.98490 2.24575 2.39115 2.62177 3.28523 3.52282 3.58757 3.65367 3.68817 3.89069 4.11146 4.14351 4.15619 4.15881 4.17351 4.22512 4.27239 4.29911 4.35950 4.42433 4.43466 4.57880 4.60930 4.66529 4.69292 4.73704 4.75357 4.82955 4.93035 4.96746 5.02135 5.05106 5.11360 5.13512 5.14592 5.20566 5.22106 5.30733 5.34041 5.37689 5.38978 5.40793 5.54916 5.56732 5.66417 5.88147 6.34063 6.51531 6.59275 6.64033 7.16956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.331 6.331 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.198 3.802 6 N -0.715 5.715 7 C 0.589 3.411 8 O -0.510 6.510 9 C -0.061 4.061 10 C -0.085 4.085 11 C -0.089 4.089 12 C -0.221 4.221 13 C 0.036 3.964 14 C -0.059 4.059 15 O -0.551 6.551 16 Si 1.005 2.995 17 H -0.255 1.255 18 H -0.259 1.259 19 H -0.272 1.272 20 N -0.511 5.511 21 C -0.117 4.117 22 C -0.408 4.408 23 Si 1.048 2.952 24 C -0.410 4.410 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.422 4.422 28 C -0.409 4.409 29 C -0.104 4.104 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.152 0.848 38 H 0.137 0.863 39 H 0.392 0.608 40 H 0.429 0.571 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.110 0.890 54 H 0.095 0.905 55 H 0.099 0.901 56 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -0.616 3.894 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.245 6.245 3 C 0.292 3.708 4 O -0.423 6.423 5 C 0.109 3.891 6 N -0.373 5.373 7 C 0.377 3.623 8 O -0.385 6.385 9 C -0.174 4.174 10 C -0.093 4.093 11 C -0.146 4.146 12 C -0.246 4.246 13 C -0.083 4.083 14 C -0.170 4.170 15 O -0.357 6.357 16 Si 0.827 3.173 17 H -0.178 1.178 18 H -0.183 1.183 19 H -0.196 1.196 20 N -0.109 5.109 21 C -0.156 4.156 22 C -0.492 4.492 23 Si 1.239 2.761 24 C -0.496 4.496 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.507 4.507 28 C -0.495 4.495 29 C -0.142 4.142 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.252 0.748 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.242 0.758 40 H 0.269 0.731 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.104 0.896 53 H 0.129 0.871 54 H 0.113 0.887 55 H 0.117 0.883 56 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.144 -0.888 3.334 5.393 hybrid contribution -0.702 0.698 -0.055 0.992 sum 3.443 -0.189 3.279 4.758 Atomic orbital electron populations 1.23439 0.76564 1.04840 1.02052 1.86900 1.23368 1.31886 1.82347 1.24762 0.93040 0.81610 0.71349 1.90666 1.67537 1.37260 1.46805 1.20352 0.83955 0.89696 0.95062 1.46042 1.55331 1.04068 1.31875 1.17063 0.79561 0.81638 0.83997 1.90837 1.37091 1.83697 1.26848 1.20098 1.07898 0.94609 0.94818 1.20072 1.00017 0.90934 0.98289 1.20319 0.98963 1.00497 0.94858 1.20785 1.05679 0.99689 0.98413 1.21226 1.03419 0.84287 0.99373 1.24855 0.97437 1.13823 0.80864 1.86494 1.36985 1.70606 1.41649 0.84852 0.80749 0.71882 0.79785 1.17836 1.18289 1.19644 1.41804 1.39322 1.08618 1.21158 1.21674 0.98071 1.03547 0.92269 1.26385 0.99851 1.12743 1.10208 0.78887 0.65550 0.65461 0.66236 1.26722 1.18470 1.03356 1.01066 1.22078 1.00248 0.95656 0.98628 1.21884 0.95065 0.97243 1.01863 1.26697 0.98536 1.15968 1.09491 1.26334 1.00147 1.08222 1.14764 1.21579 0.97993 0.92644 1.01995 0.86479 0.92123 0.92312 0.74767 0.91595 0.90939 0.91484 0.83012 0.84535 0.75849 0.73075 0.91349 0.89184 0.89898 0.90839 0.89271 0.90242 0.92123 0.91902 0.92660 0.91517 0.90815 0.89630 0.87100 0.88676 0.88270 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.56 113.37 1.20 1.32 16 2 O -0.33 -3.01 6.64 -43.65 -0.29 -3.30 16 3 C 0.45 3.65 6.45 71.23 0.46 4.11 16 4 O -0.53 -6.63 15.92 21.97 0.35 -6.28 16 5 C 0.20 0.18 0.62 2.58 0.00 0.19 16 6 N -0.71 1.31 3.47 -431.50 -1.50 -0.19 16 7 C 0.59 2.12 5.40 86.45 0.47 2.58 16 8 O -0.51 -4.91 10.14 19.20 0.19 -4.71 16 9 C -0.06 -0.12 7.06 40.35 0.28 0.17 16 10 C -0.08 -0.32 6.21 -19.56 -0.12 -0.44 16 11 C -0.09 -0.36 9.83 71.24 0.70 0.34 16 12 C -0.22 -0.08 9.27 22.01 0.20 0.12 16 13 C 0.04 -0.11 6.47 41.34 0.27 0.16 16 14 C -0.06 0.37 3.08 71.24 0.22 0.59 16 15 O -0.55 2.87 12.88 -148.98 -1.92 0.96 16 16 Si 1.00 -4.74 25.84 68.60 1.77 -2.97 16 17 H -0.25 0.93 7.11 99.48 0.71 1.64 16 18 H -0.26 0.69 7.11 99.48 0.71 1.39 16 19 H -0.27 0.42 7.11 99.48 0.71 1.13 16 20 N -0.51 1.97 5.99 -171.93 -1.03 0.94 16 21 C -0.12 -0.17 4.14 30.87 0.13 -0.05 16 22 C -0.41 0.86 4.68 72.40 0.34 1.20 16 23 Si 1.05 -7.68 10.15 68.60 0.70 -6.98 16 24 C -0.41 2.36 5.94 73.17 0.43 2.79 16 25 C -0.13 0.34 5.97 32.04 0.19 0.54 16 26 C -0.12 0.30 6.09 31.78 0.19 0.50 16 27 C -0.42 1.67 5.84 72.91 0.43 2.10 16 28 C -0.41 3.72 4.70 72.44 0.34 4.06 16 29 C -0.10 0.36 4.27 30.92 0.13 0.50 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 0.25 8.13 -2.38 -0.02 0.23 16 32 H 0.06 0.31 8.13 -2.39 -0.02 0.29 16 33 H 0.41 -3.28 5.31 -92.71 -0.49 -3.77 16 34 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.07 0.51 6.48 -2.39 -0.02 0.49 16 37 H 0.15 -0.31 6.19 -2.91 -0.02 -0.33 16 38 H 0.14 -1.29 7.96 -2.39 -0.02 -1.31 16 39 H 0.39 -4.01 8.70 -74.06 -0.64 -4.66 16 40 H 0.43 -4.15 8.19 -92.71 -0.76 -4.91 16 41 H 0.07 0.50 6.53 -2.39 -0.02 0.48 16 42 H 0.09 -0.06 7.75 -2.39 -0.02 -0.08 16 43 H 0.08 -0.14 7.97 -2.39 -0.02 -0.16 16 44 H 0.07 -0.04 6.19 -2.39 -0.01 -0.06 16 45 H 0.09 -0.66 8.04 -2.39 -0.02 -0.68 16 46 H 0.08 -0.44 8.04 -2.39 -0.02 -0.46 16 47 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 48 H 0.06 -0.14 8.14 -2.38 -0.02 -0.15 16 49 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 51 H 0.07 -0.21 8.03 -2.39 -0.02 -0.23 16 52 H 0.08 -0.42 8.03 -2.38 -0.02 -0.44 16 53 H 0.11 -1.22 7.97 -2.39 -0.02 -1.24 16 54 H 0.09 -1.22 5.97 -2.38 -0.01 -1.24 16 55 H 0.10 -0.38 7.76 -2.39 -0.02 -0.40 16 56 H 0.08 -0.16 7.87 -2.38 -0.02 -0.18 16 Total: 0.00 -20.41 425.17 3.92 -16.49 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.22 Total: -14.71 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 5.86 Total: 20.76 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -2.53 Total: 0.75 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.66 Total: -13.33 kcal Atomic # 14 Polarization: -12.42 SS G_CDS: 2.47 Total: -9.95 kcal Total: -20.41 3.92 -16.49 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339704_13940406.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.014 kcal (2) G-P(sol) polarization free energy of solvation -20.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds