Wall clock time and date at job start Sun Mar 7 2021 18:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00436 * 2 1 4 4 O 1.20828 * 119.99648 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00314 * 179.97438 * 3 2 1 6 6 N 1.46498 * 108.88351 * 325.00163 * 5 3 2 7 7 C 1.34778 * 120.00305 * 60.00191 * 6 5 3 8 8 O 1.21695 * 119.99894 * 359.97438 * 7 6 5 9 9 C 1.46678 * 120.00228 * 180.02562 * 7 6 5 10 10 C 1.37870 * 126.23272 * 180.02562 * 9 7 6 11 11 C 1.39831 * 107.08478 * 179.72636 * 10 9 7 12 12 C 1.35455 * 107.86442 * 0.40852 * 11 10 9 13 13 C 1.50702 * 125.56146 * 179.84492 * 12 11 10 14 14 O 1.42898 * 109.46783 * 244.69678 * 13 12 11 15 15 Si 1.86300 * 109.47301 * 4.69610 * 13 12 11 16 16 H 1.48500 * 109.46912 * 60.00293 * 15 13 12 17 17 H 1.48503 * 109.46942 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47262 * 300.00109 * 15 13 12 19 19 N 1.35530 * 108.86834 * 359.58708 * 12 11 10 20 20 C 1.52585 * 108.90677 * 83.63019 * 5 3 2 21 21 C 1.54213 * 109.29931 * 198.48138 * 20 5 3 22 22 Si 1.85205 * 106.98111 * 303.15859 * 21 20 5 23 23 C 1.87753 * 111.40719 * 166.95559 * 22 21 20 24 24 C 1.56413 * 98.96848 * 98.20815 * 23 22 21 25 25 C 1.53778 * 109.78199 * 39.35567 * 24 23 22 26 26 C 1.55685 * 111.40147 * 312.19261 * 25 24 23 27 27 C 1.85206 * 109.99970 * 42.91073 * 22 21 20 28 28 C 1.52584 * 108.90750 * 206.37135 * 5 3 2 29 29 H 1.08998 * 109.46807 * 59.99717 * 1 2 3 30 30 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46779 * 300.00030 * 1 2 3 32 32 H 0.97001 * 120.00308 * 239.99722 * 6 5 3 33 33 H 1.08008 * 126.45983 * 359.97438 * 10 9 7 34 34 H 1.08007 * 126.07034 * 180.26338 * 11 10 9 35 35 H 1.09004 * 109.46818 * 124.70242 * 13 12 11 36 36 H 0.96706 * 114.00468 * 60.00101 * 14 13 12 37 37 H 0.97002 * 125.67642 * 180.29702 * 19 12 11 38 38 H 1.09002 * 109.51449 * 318.28510 * 20 5 3 39 39 H 1.08997 * 109.51272 * 78.43933 * 20 5 3 40 40 H 1.08995 * 109.95791 * 183.80260 * 21 20 5 41 41 H 1.08999 * 110.05344 * 62.56688 * 21 20 5 42 42 H 1.08994 * 111.49414 * 215.64866 * 23 22 21 43 43 H 1.08999 * 111.49225 * 340.76889 * 23 22 21 44 44 H 1.08997 * 109.42003 * 279.25419 * 24 23 22 45 45 H 1.09009 * 109.41475 * 159.45096 * 24 23 22 46 46 H 1.08999 * 109.10192 * 191.67584 * 25 24 23 47 47 H 1.09005 * 109.10344 * 72.70145 * 25 24 23 48 48 H 1.09003 * 111.14499 * 270.10751 * 26 25 24 49 49 H 1.08999 * 111.14873 * 145.89195 * 26 25 24 50 50 H 1.09005 * 109.93960 * 197.71345 * 27 22 21 51 51 H 1.08999 * 109.93689 * 76.48512 * 27 22 21 52 52 H 1.09000 * 109.51758 * 281.55726 * 28 5 3 53 53 H 1.09008 * 109.51325 * 41.71579 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.0990 0.1658 0.7960 7 6 3.8313 -1.1068 0.4422 8 8 3.1468 -1.3348 -0.5378 9 6 4.3641 -2.2171 1.2390 10 6 4.1722 -3.5605 0.9955 11 6 4.8584 -4.2609 1.9924 12 6 5.4370 -3.3531 2.8146 13 6 6.2720 -3.6757 4.0270 14 8 5.6084 -3.2043 5.2015 15 14 6.5086 -5.5198 4.1454 16 1 7.1983 -6.0097 2.9249 17 1 7.3320 -5.8375 5.3397 18 1 5.1849 -6.1821 4.2656 19 7 5.1471 -2.1076 2.3657 20 6 4.0691 1.1404 -1.4338 21 6 5.5624 0.7556 -1.4166 22 14 6.4465 2.0623 -0.4466 23 6 8.1924 1.5276 -0.0093 24 6 8.9667 2.2672 -1.1494 25 6 8.3490 3.6562 -1.3819 26 6 6.7983 3.5768 -1.4937 27 6 5.4726 2.4947 1.0682 28 6 3.9923 2.5923 0.6417 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.6443 0.3475 1.5774 33 1 3.6028 -3.9909 0.1848 34 1 4.9150 -5.3349 2.0908 35 1 7.2436 -3.1895 3.9388 36 1 4.7355 -3.5954 5.3439 37 1 5.4427 -1.2773 2.7707 38 1 3.5016 0.3643 -1.9473 39 1 3.9427 2.0897 -1.9543 40 1 5.9498 0.7225 -2.4349 41 1 5.6927 -0.2148 -0.9378 42 1 8.4868 1.8919 0.9749 43 1 8.3093 0.4465 -0.0833 44 1 8.9034 1.6839 -2.0680 45 1 10.0127 2.3789 -0.8636 46 1 8.7522 4.0761 -2.3035 47 1 8.6137 4.3082 -0.5494 48 1 6.4859 3.4218 -2.5265 49 1 6.3276 4.4646 -1.0716 50 1 5.8089 3.4524 1.4656 51 1 5.5918 1.7160 1.8215 52 1 3.8733 3.4025 -0.0777 53 1 3.3732 2.7880 1.5173 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339704_6580494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 18:06:14 Heat of formation + Delta-G solvation = -132.132605 kcal Electronic energy + Delta-G solvation = -35510.827955 eV Core-core repulsion = 31086.145048 eV Total energy + Delta-G solvation = -4424.682907 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 380.177 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.72495 -42.05612 -40.30213 -38.30424 -37.63193 -37.23749 -36.13830 -33.73819 -32.39293 -32.03250 -31.22991 -29.68498 -29.59341 -27.83630 -26.65718 -24.84914 -23.81422 -23.60003 -23.05577 -21.68410 -21.20153 -21.03053 -20.44697 -19.97294 -18.98515 -18.25151 -17.92580 -17.51661 -16.59962 -16.57576 -16.49636 -15.99960 -15.92320 -15.63169 -15.48115 -15.23673 -14.98937 -14.90071 -14.73895 -14.66085 -14.29642 -14.22452 -14.03860 -13.98043 -13.68794 -13.63836 -13.39719 -13.18146 -13.12707 -12.88480 -12.46882 -12.38503 -12.32400 -12.24559 -12.11919 -12.08566 -11.98291 -11.83699 -11.78046 -11.63879 -11.34153 -11.12812 -10.58899 -10.52213 -10.34052 -10.24289 -10.18702 -10.03280 -9.23151 0.38095 0.92132 1.14692 1.53268 1.59300 1.63284 1.67124 1.75013 1.83307 1.90308 1.91409 1.98092 2.23880 2.39962 2.62193 3.27368 3.53045 3.57713 3.67527 3.68669 3.87612 4.11073 4.15129 4.16082 4.16438 4.21703 4.27146 4.28729 4.33461 4.37978 4.42773 4.42904 4.59243 4.60604 4.66872 4.69762 4.75015 4.95106 4.99336 5.01838 5.04837 5.11598 5.12186 5.14036 5.15166 5.22526 5.29928 5.34173 5.38614 5.39577 5.55422 5.57047 5.62498 5.81863 6.30747 6.49326 6.57841 6.64913 7.12832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.449 3.551 4 O -0.532 6.532 5 C 0.197 3.803 6 N -0.713 5.713 7 C 0.590 3.410 8 O -0.518 6.518 9 C -0.056 4.056 10 C -0.116 4.116 11 C -0.219 4.219 12 C 0.032 3.968 13 C -0.060 4.060 14 O -0.551 6.551 15 Si 1.006 2.994 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.255 1.255 19 N -0.510 5.510 20 C -0.118 4.118 21 C -0.409 4.409 22 Si 1.048 2.952 23 C -0.410 4.410 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.422 4.422 27 C -0.408 4.408 28 C -0.104 4.104 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.413 0.587 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.137 0.863 36 H 0.392 0.608 37 H 0.429 0.571 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.111 0.889 51 H 0.096 0.904 52 H 0.099 0.901 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -0.362 4.305 6.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C 0.292 3.708 4 O -0.422 6.422 5 C 0.109 3.891 6 N -0.371 5.371 7 C 0.378 3.622 8 O -0.393 6.393 9 C -0.170 4.170 10 C -0.143 4.143 11 C -0.243 4.243 12 C -0.088 4.088 13 C -0.170 4.170 14 O -0.358 6.358 15 Si 0.829 3.171 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.178 1.178 19 N -0.108 5.108 20 C -0.156 4.156 21 C -0.493 4.493 22 Si 1.239 2.761 23 C -0.496 4.496 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.507 4.507 27 C -0.495 4.495 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.242 0.758 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.130 0.870 51 H 0.114 0.886 52 H 0.118 0.882 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.448 -0.635 3.747 5.851 hybrid contribution -0.796 0.627 -0.174 1.028 sum 3.652 -0.008 3.573 5.110 Atomic orbital electron populations 1.23450 0.76493 1.04870 1.02125 1.86900 1.23458 1.31962 1.82363 1.24772 0.93063 0.81602 0.71388 1.90666 1.67520 1.37211 1.46754 1.20372 0.83948 0.89766 0.95060 1.46029 1.55279 1.04038 1.31797 1.17114 0.79429 0.81777 0.83906 1.90866 1.37301 1.83960 1.27160 1.20262 1.07262 0.95009 0.94425 1.21392 1.01488 0.90946 1.00472 1.20894 1.05227 0.99827 0.98339 1.21286 1.03633 0.84314 0.99518 1.24862 0.97441 1.13853 0.80864 1.86495 1.36978 1.70596 1.41714 0.84835 0.80725 0.71826 0.79760 1.18285 1.19737 1.17832 1.41878 1.39102 1.08716 1.21056 1.21679 0.98114 1.03555 0.92296 1.26402 0.99788 1.12819 1.10292 0.78885 0.65574 0.65412 0.66236 1.26720 1.18383 1.03385 1.01086 1.22080 1.00258 0.95652 0.98639 1.21883 0.95058 0.97256 1.01859 1.26697 0.98552 1.15976 1.09482 1.26333 1.00093 1.08300 1.14730 1.21584 0.98051 0.92542 1.02033 0.92296 0.86494 0.91979 0.74614 0.83905 0.82842 0.84533 0.75826 0.73045 0.91522 0.89081 0.89881 0.90823 0.89214 0.90197 0.92138 0.91891 0.92688 0.91494 0.90844 0.89609 0.87018 0.88600 0.88227 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.56 113.37 1.20 1.32 16 2 O -0.33 -3.18 6.63 -43.64 -0.29 -3.47 16 3 C 0.45 3.74 6.45 71.24 0.46 4.20 16 4 O -0.53 -6.65 15.92 21.96 0.35 -6.30 16 5 C 0.20 0.20 0.62 2.58 0.00 0.20 16 6 N -0.71 1.37 3.47 -431.52 -1.50 -0.12 16 7 C 0.59 2.20 5.41 86.45 0.47 2.66 16 8 O -0.52 -5.61 12.22 19.20 0.23 -5.37 16 9 C -0.06 -0.08 7.06 40.35 0.28 0.21 16 10 C -0.12 -0.37 10.65 22.57 0.24 -0.13 16 11 C -0.22 0.10 9.32 22.01 0.21 0.31 16 12 C 0.03 -0.11 6.47 41.35 0.27 0.15 16 13 C -0.06 0.40 3.08 71.24 0.22 0.62 16 14 O -0.55 3.07 12.88 -148.98 -1.92 1.15 16 15 Si 1.01 -5.16 25.84 68.60 1.77 -3.38 16 16 H -0.26 0.80 7.11 99.48 0.71 1.50 16 17 H -0.27 0.50 7.11 99.48 0.71 1.20 16 18 H -0.25 1.04 7.11 99.48 0.71 1.74 16 19 N -0.51 2.28 5.99 -171.94 -1.03 1.25 16 20 C -0.12 -0.20 4.14 30.87 0.13 -0.07 16 21 C -0.41 0.86 4.68 72.39 0.34 1.20 16 22 Si 1.05 -7.88 10.15 68.60 0.70 -7.18 16 23 C -0.41 2.47 5.95 73.17 0.44 2.90 16 24 C -0.13 0.37 5.97 32.05 0.19 0.56 16 25 C -0.12 0.32 6.09 31.78 0.19 0.51 16 26 C -0.42 1.73 5.84 72.91 0.43 2.15 16 27 C -0.41 3.84 4.70 72.44 0.34 4.18 16 28 C -0.10 0.38 4.27 30.92 0.13 0.52 16 29 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 32 H 0.41 -3.46 5.31 -92.71 -0.49 -3.96 16 33 H 0.14 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.15 -0.46 6.19 -2.91 -0.02 -0.48 16 35 H 0.14 -1.35 7.96 -2.39 -0.02 -1.37 16 36 H 0.39 -4.17 8.70 -74.05 -0.64 -4.82 16 37 H 0.43 -4.42 8.19 -92.71 -0.76 -5.18 16 38 H 0.07 0.52 6.53 -2.39 -0.02 0.50 16 39 H 0.09 -0.06 7.75 -2.39 -0.02 -0.08 16 40 H 0.08 -0.14 7.97 -2.39 -0.02 -0.15 16 41 H 0.07 -0.05 6.20 -2.39 -0.01 -0.06 16 42 H 0.09 -0.69 8.04 -2.39 -0.02 -0.71 16 43 H 0.08 -0.47 8.04 -2.39 -0.02 -0.49 16 44 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 46 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 48 H 0.07 -0.21 8.03 -2.39 -0.02 -0.23 16 49 H 0.09 -0.44 8.03 -2.39 -0.02 -0.46 16 50 H 0.11 -1.27 7.97 -2.38 -0.02 -1.29 16 51 H 0.10 -1.28 5.97 -2.39 -0.01 -1.29 16 52 H 0.10 -0.40 7.76 -2.39 -0.02 -0.42 16 53 H 0.08 -0.18 7.87 -2.38 -0.02 -0.20 16 Total: 0.00 -21.29 407.21 3.66 -17.63 By element: Atomic # 1 Polarization: -15.50 SS G_CDS: -0.19 Total: -15.69 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 5.53 Total: 21.49 kcal Atomic # 7 Polarization: 3.65 SS G_CDS: -2.53 Total: 1.13 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.62 Total: -13.99 kcal Atomic # 14 Polarization: -13.04 SS G_CDS: 2.47 Total: -10.57 kcal Total: -21.29 3.66 -17.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339704_6580494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.502 kcal (2) G-P(sol) polarization free energy of solvation -21.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds