Wall clock time and date at job start Sun Mar 7 2021 18:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99971 * 2 1 4 4 O 1.20823 * 119.99580 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00049 * 180.02562 * 3 2 1 6 6 N 1.46499 * 108.88623 * 323.64258 * 5 3 2 7 7 C 1.34773 * 120.00336 * 61.35735 * 6 5 3 8 8 O 1.21636 * 120.00377 * 0.02562 * 7 6 5 9 9 C 1.47194 * 119.99813 * 179.97438 * 7 6 5 10 10 C 1.36006 * 123.46044 * 0.02811 * 9 7 6 11 11 S 1.70454 * 110.81441 * 179.97438 * 10 9 7 12 12 C 1.75508 * 92.44303 * 359.97438 * 11 10 9 13 13 C 1.50700 * 124.70745 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.46997 * 119.97919 * 13 12 11 15 15 Si 1.86295 * 109.47471 * 359.97438 * 13 12 11 16 16 H 1.48504 * 109.47379 * 59.99930 * 15 13 12 17 17 H 1.48508 * 109.47400 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47236 * 299.99630 * 15 13 12 19 19 C 1.32759 * 110.57627 * 359.73950 * 12 11 10 20 20 C 1.52584 * 108.83406 * 82.23531 * 5 3 2 21 21 C 1.54351 * 109.20745 * 198.43567 * 20 5 3 22 22 Si 1.85200 * 107.06587 * 303.26683 * 21 20 5 23 23 C 1.87764 * 111.37754 * 278.83935 * 22 21 20 24 24 C 1.56404 * 98.96367 * 221.41149 * 23 22 21 25 25 C 1.53781 * 109.78026 * 39.37015 * 24 23 22 26 26 C 1.55684 * 111.39998 * 312.18881 * 25 24 23 27 27 C 1.85201 * 110.00472 * 42.82939 * 22 21 20 28 28 C 1.52599 * 108.90620 * 205.00155 * 5 3 2 29 29 H 1.08999 * 109.47202 * 59.99975 * 1 2 3 30 30 H 1.09008 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47368 * 299.99578 * 1 2 3 32 32 H 0.97007 * 119.99944 * 241.36521 * 6 5 3 33 33 H 1.07997 * 124.59651 * 359.97438 * 10 9 7 34 34 H 1.09004 * 109.47303 * 239.97455 * 13 12 11 35 35 H 0.96705 * 114.00297 * 299.99476 * 14 13 12 36 36 H 1.08010 * 123.45841 * 180.23151 * 19 12 11 37 37 H 1.08998 * 109.51651 * 78.51585 * 20 5 3 38 38 H 1.09007 * 109.51737 * 318.35464 * 20 5 3 39 39 H 1.09008 * 109.93559 * 183.87692 * 21 20 5 40 40 H 1.09004 * 109.93462 * 62.65736 * 21 20 5 41 41 H 1.09003 * 111.49793 * 338.84898 * 23 22 21 42 42 H 1.08999 * 111.49815 * 103.97364 * 23 22 21 43 43 H 1.08992 * 109.42226 * 279.27135 * 24 23 22 44 44 H 1.09003 * 109.42025 * 159.46417 * 24 23 22 45 45 H 1.09007 * 109.09830 * 191.67710 * 25 24 23 46 46 H 1.08998 * 109.10175 * 72.70325 * 25 24 23 47 47 H 1.08999 * 111.14532 * 270.09761 * 26 25 24 48 48 H 1.09002 * 111.14333 * 145.88102 * 26 25 24 49 49 H 1.08999 * 109.93713 * 76.56031 * 27 22 21 50 50 H 1.09003 * 109.93165 * 197.77914 * 27 22 21 51 51 H 1.08999 * 109.51836 * 41.69562 * 28 5 3 52 52 H 1.08998 * 109.51949 * 281.52098 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 4.0987 0.1848 0.8207 7 6 3.8541 -1.0963 0.4810 8 8 3.1917 -1.3475 -0.5078 9 6 4.3895 -2.1915 1.3060 10 6 5.1378 -1.9914 2.4239 11 16 5.5857 -3.4782 3.1270 12 6 4.7478 -4.4008 1.8913 13 6 4.6887 -5.9056 1.8361 14 8 3.3266 -6.3317 1.9067 15 14 5.6374 -6.6175 3.2727 16 1 5.0364 -6.1449 4.5458 17 1 5.5797 -8.1004 3.2180 18 1 7.0530 -6.1747 3.1992 19 6 4.1681 -3.5888 1.0154 20 6 4.0679 1.1061 -1.4317 21 6 5.5627 0.7225 -1.4040 22 14 6.4473 2.0502 -0.4635 23 6 6.7927 3.5433 -1.5483 24 6 8.2462 3.8631 -1.0672 25 6 9.0225 2.5535 -0.8501 26 6 8.1927 1.5325 -0.0178 27 6 5.4719 2.5191 1.0395 28 6 3.9919 2.6073 0.6097 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.6272 0.3850 1.6092 33 1 5.4112 -1.0220 2.8134 34 1 5.1299 -6.2526 0.9017 35 1 2.8700 -6.0577 2.7140 36 1 3.5932 -3.9374 0.1701 37 1 3.9425 2.0430 -1.9744 38 1 3.4991 0.3188 -1.9265 39 1 5.9509 0.6660 -2.4211 40 1 5.6910 -0.2367 -0.9024 41 1 6.7707 3.2820 -2.6063 42 1 6.1096 4.3636 -1.3282 43 1 8.2038 4.4188 -0.1305 44 1 8.7536 4.4644 -1.8215 45 1 9.9511 2.7725 -0.3230 46 1 9.2597 2.1146 -1.8193 47 1 8.3779 1.6526 1.0496 48 1 8.3931 0.5097 -0.3371 49 1 5.5901 1.7587 1.8114 50 1 5.8083 3.4858 1.4141 51 1 3.3723 2.8236 1.4800 52 1 3.8738 3.4003 -0.1287 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339704_6894386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 18:21:15 Heat of formation + Delta-G solvation = -142.919993 kcal Electronic energy + Delta-G solvation = -35029.825050 eV Core-core repulsion = 30631.026384 eV Total energy + Delta-G solvation = -4398.798666 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 397.138 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.42637 -40.72187 -39.01609 -38.19790 -37.35984 -36.89684 -36.11677 -33.63814 -32.33992 -31.50178 -29.65585 -29.56531 -27.77941 -26.90877 -25.60197 -24.81141 -23.74829 -23.04521 -22.36042 -21.08209 -20.65475 -20.42298 -19.23733 -18.67209 -18.28833 -17.82100 -17.67230 -17.44007 -16.48423 -16.32537 -16.09264 -15.96615 -15.76523 -15.58657 -15.46862 -15.03880 -14.74992 -14.62536 -14.49097 -14.30548 -14.21456 -14.12647 -13.60977 -13.57881 -13.47934 -13.37274 -13.18762 -13.04170 -12.90023 -12.62352 -12.45465 -12.33295 -12.31525 -12.27508 -12.15753 -12.08277 -11.95883 -11.82794 -11.73248 -11.62223 -11.31992 -10.85530 -10.55335 -10.45680 -10.30376 -10.19328 -10.15092 -9.92800 -9.42863 -0.29264 0.39376 0.70672 0.89276 0.95558 1.14904 1.43799 1.53040 1.63453 1.77754 1.86331 1.91415 1.93846 2.04432 2.41317 2.65740 3.30453 3.44869 3.61396 3.70126 3.72059 3.95347 4.04120 4.14611 4.16274 4.17652 4.18543 4.21496 4.32135 4.34212 4.39142 4.45150 4.46953 4.58397 4.59622 4.69777 4.71855 4.75984 4.79654 4.99622 5.04461 5.06700 5.08081 5.14312 5.17062 5.21882 5.24517 5.25208 5.32000 5.37849 5.40985 5.43286 5.58307 5.59084 6.46150 6.59797 6.65245 7.23931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.449 3.551 4 O -0.533 6.533 5 C 0.197 3.803 6 N -0.708 5.708 7 C 0.577 3.423 8 O -0.529 6.529 9 C -0.173 4.173 10 C -0.191 4.191 11 S 0.207 5.793 12 C -0.246 4.246 13 C -0.042 4.042 14 O -0.549 6.549 15 Si 0.919 3.081 16 H -0.229 1.229 17 H -0.245 1.245 18 H -0.232 1.232 19 C -0.066 4.066 20 C -0.118 4.118 21 C -0.410 4.410 22 Si 1.047 2.953 23 C -0.422 4.422 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.410 4.410 27 C -0.406 4.406 28 C -0.103 4.103 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.418 0.582 33 H 0.204 0.796 34 H 0.129 0.871 35 H 0.390 0.610 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.080 0.920 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 0.329 6.003 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.292 3.708 4 O -0.422 6.422 5 C 0.108 3.892 6 N -0.367 5.367 7 C 0.364 3.636 8 O -0.406 6.406 9 C -0.191 4.191 10 C -0.329 4.329 11 S 0.473 5.527 12 C -0.363 4.363 13 C -0.154 4.154 14 O -0.357 6.357 15 Si 0.739 3.261 16 H -0.152 1.152 17 H -0.168 1.168 18 H -0.155 1.155 19 C -0.096 4.096 20 C -0.157 4.157 21 C -0.493 4.493 22 Si 1.238 2.762 23 C -0.507 4.507 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.496 4.496 27 C -0.493 4.493 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.259 0.741 33 H 0.221 0.779 34 H 0.147 0.853 35 H 0.239 0.761 36 H 0.157 0.843 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.129 0.871 51 H 0.098 0.902 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.062 -0.615 6.705 9.061 hybrid contribution -1.605 1.033 -1.424 2.382 sum 4.457 0.418 5.281 6.923 Atomic orbital electron populations 1.23440 0.76517 1.04791 1.02151 1.86880 1.23420 1.32128 1.82404 1.24836 0.93171 0.81508 0.71310 1.90660 1.67567 1.37207 1.46793 1.20366 0.83794 0.90289 0.94725 1.45980 1.56211 1.03846 1.30671 1.17741 0.79135 0.82473 0.84271 1.90814 1.38272 1.83866 1.27599 1.20126 1.06292 0.93677 0.98971 1.26078 1.01735 1.06153 0.98921 1.83162 1.49776 0.93968 1.25745 1.24872 1.08523 1.01090 1.01820 1.24505 0.89742 0.88743 1.12431 1.86521 1.23438 1.78427 1.47285 0.85928 0.80480 0.82500 0.77192 1.15193 1.16850 1.15475 1.20965 0.98847 0.90238 0.99509 1.21702 0.98176 1.03324 0.92463 1.26458 0.99763 1.13266 1.09851 0.78908 0.65639 0.65136 0.66521 1.26856 0.99632 1.15883 1.08342 1.22072 0.95164 0.97574 1.01532 1.21895 0.99372 0.95030 0.99968 1.26553 1.17998 1.01534 1.03534 1.26299 0.99973 1.08531 1.14468 1.21574 0.98080 0.92147 1.02305 0.92347 0.86623 0.91873 0.74070 0.77882 0.85344 0.76074 0.84324 0.89301 0.91650 0.90102 0.90825 0.90956 0.89778 0.90815 0.92494 0.91982 0.92690 0.89054 0.90369 0.88231 0.87081 0.90181 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.56 113.37 1.20 1.33 16 2 O -0.33 -3.39 6.78 -43.70 -0.30 -3.68 16 3 C 0.45 3.92 6.46 71.24 0.46 4.38 16 4 O -0.53 -6.82 15.88 21.97 0.35 -6.47 16 5 C 0.20 0.27 0.62 2.59 0.00 0.27 16 6 N -0.71 1.18 3.45 -431.01 -1.49 -0.30 16 7 C 0.58 2.30 5.33 86.60 0.46 2.76 16 8 O -0.53 -6.12 12.16 19.17 0.23 -5.89 16 9 C -0.17 -0.14 5.98 -19.87 -0.12 -0.26 16 10 C -0.19 1.06 10.38 67.30 0.70 1.76 16 11 S 0.21 -1.01 20.18 -56.49 -1.14 -2.15 16 12 C -0.25 0.25 5.69 24.51 0.14 0.39 16 13 C -0.04 0.09 2.95 71.24 0.21 0.30 16 14 O -0.55 -0.01 12.85 -148.98 -1.91 -1.92 16 15 Si 0.92 -3.29 26.19 68.60 1.80 -1.49 16 16 H -0.23 0.99 7.11 99.48 0.71 1.70 16 17 H -0.25 0.10 7.11 99.48 0.71 0.81 16 18 H -0.23 0.84 7.11 99.48 0.71 1.54 16 19 C -0.07 -0.18 9.91 22.67 0.22 0.04 16 20 C -0.12 -0.29 4.13 30.91 0.13 -0.16 16 21 C -0.41 0.61 4.68 72.44 0.34 0.95 16 22 Si 1.05 -7.58 10.16 68.60 0.70 -6.88 16 23 C -0.42 1.58 5.95 73.17 0.44 2.02 16 24 C -0.13 0.37 5.97 32.04 0.19 0.57 16 25 C -0.12 0.36 6.09 31.78 0.19 0.56 16 26 C -0.41 2.43 5.84 72.91 0.43 2.85 16 27 C -0.41 3.83 4.69 72.45 0.34 4.18 16 28 C -0.10 0.37 4.26 30.92 0.13 0.50 16 29 H 0.06 0.35 8.13 -2.39 -0.02 0.33 16 30 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 32 H 0.42 -3.59 4.73 -92.70 -0.44 -4.03 16 33 H 0.20 -2.71 7.01 -2.91 -0.02 -2.73 16 34 H 0.13 -0.41 7.96 -2.38 -0.02 -0.43 16 35 H 0.39 -2.57 8.70 -74.05 -0.64 -3.21 16 36 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.09 0.01 7.76 -2.39 -0.02 0.00 16 38 H 0.06 0.58 6.46 -2.38 -0.02 0.56 16 39 H 0.08 -0.07 7.97 -2.38 -0.02 -0.09 16 40 H 0.07 -0.01 6.12 -2.39 -0.01 -0.02 16 41 H 0.07 -0.16 8.04 -2.39 -0.02 -0.18 16 42 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 43 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 46 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.09 -0.76 8.03 -2.39 -0.02 -0.78 16 48 H 0.08 -0.40 8.03 -2.39 -0.02 -0.42 16 49 H 0.10 -1.36 5.98 -2.39 -0.01 -1.37 16 50 H 0.11 -1.27 7.97 -2.39 -0.02 -1.29 16 51 H 0.08 -0.19 7.85 -2.39 -0.02 -0.21 16 52 H 0.10 -0.37 7.76 -2.39 -0.02 -0.39 16 Total: 0.00 -20.81 411.89 4.32 -16.49 By element: Atomic # 1 Polarization: -10.76 SS G_CDS: 0.63 Total: -10.13 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.46 Total: 22.44 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -1.49 Total: -0.30 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.63 Total: -17.97 kcal Atomic # 14 Polarization: -10.86 SS G_CDS: 2.49 Total: -8.37 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.14 Total: -2.15 kcal Total: -20.81 4.32 -16.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339704_6894386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.433 kcal (2) G-P(sol) polarization free energy of solvation -20.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds