Wall clock time and date at job start Sun Mar 7 2021 08:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47375 * 2 1 4 4 C 1.50706 * 109.46997 * 239.99634 * 2 1 3 5 5 C 1.35449 * 126.06341 * 120.02387 * 4 2 1 6 6 N 1.35533 * 108.87181 * 179.72245 * 5 4 2 7 7 C 1.37654 * 108.64118 * 0.24801 * 6 5 4 8 8 C 1.46677 * 126.23202 * 179.97438 * 7 6 5 9 9 O 1.21698 * 120.00141 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00217 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00249 * 175.07100 * 10 8 7 12 12 C 1.53004 * 112.84771 * 65.38891 * 11 10 8 13 13 O 1.42891 * 109.47177 * 55.29123 * 12 11 10 14 14 C 1.53783 * 113.61601 * 196.58375 * 11 10 8 15 15 C 1.54056 * 86.98143 * 89.16270 * 14 11 10 16 16 H 1.09001 * 113.69082 * 139.99387 * 15 14 11 17 17 O 1.42900 * 113.61041 * 270.88303 * 15 14 11 18 18 C 1.53774 * 87.07863 * 25.43155 * 15 14 11 19 19 C 1.37862 * 107.53650 * 359.97438 * 7 6 5 20 20 H 0.96693 * 113.99683 * 60.00687 * 1 2 3 21 21 H 1.08999 * 109.47121 * 120.00210 * 2 1 3 22 22 H 1.48510 * 109.99876 * 298.67944 * 3 2 1 23 23 H 1.48498 * 110.00015 * 59.99953 * 3 2 1 24 24 H 1.08002 * 125.57020 * 359.97438 * 5 4 2 25 25 H 0.97001 * 125.68377 * 180.20468 * 6 5 4 26 26 H 0.97001 * 119.99668 * 355.07274 * 10 8 7 27 27 H 1.09000 * 109.46857 * 175.28491 * 12 11 10 28 28 H 1.08993 * 109.46914 * 295.28553 * 12 11 10 29 29 H 0.96700 * 113.99906 * 180.02562 * 13 12 11 30 30 H 1.08992 * 113.61446 * 203.66221 * 14 11 10 31 31 H 1.08994 * 113.61218 * 334.57401 * 14 11 10 32 32 H 0.96705 * 114.00057 * 277.49320 * 17 15 14 33 33 H 1.09001 * 113.61654 * 220.02218 * 18 15 14 34 34 H 1.09002 * 113.61284 * 89.11995 * 18 15 14 35 35 H 1.07999 * 126.46328 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7136 -0.1742 -2.1974 6 7 2.9613 -1.1202 -3.1359 7 6 2.3224 -2.2827 -2.7681 8 6 2.3331 -3.5491 -3.5079 9 8 1.7251 -4.5110 -3.0765 10 7 3.0161 -3.6476 -4.6656 11 6 3.1168 -4.9395 -5.3492 12 6 1.7665 -5.4501 -5.8562 13 8 1.1678 -4.4607 -6.6955 14 6 4.2317 -4.9915 -6.4070 15 6 5.1702 -5.4560 -5.2771 16 1 5.8675 -6.2371 -5.5802 17 8 5.8081 -4.3810 -4.5846 18 6 3.9176 -5.9913 -4.5636 19 6 1.6708 -2.0398 -1.5777 20 1 -0.3932 0.4416 -0.7651 21 1 1.7924 -0.5139 0.8900 22 1 1.5880 2.4585 -1.2243 23 1 1.5616 2.4678 1.2085 24 1 3.0834 0.8404 -2.2155 25 1 3.4987 -0.9982 -3.9342 26 1 3.4411 -2.8631 -5.0462 27 1 1.9156 -6.3675 -6.4256 28 1 1.1124 -5.6512 -5.0079 29 1 0.3068 -4.7172 -7.0533 30 1 4.0684 -5.7457 -7.1767 31 1 4.4900 -4.0153 -6.8174 32 1 6.5966 -4.0400 -5.0286 33 1 3.9225 -5.8218 -3.4869 34 1 3.6687 -7.0184 -4.8303 35 1 1.0748 -2.7445 -1.0169 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_10543058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:02 Heat of formation + Delta-G solvation = -90.186084 kcal Electronic energy + Delta-G solvation = -21207.437348 eV Core-core repulsion = 17787.845239 eV Total energy + Delta-G solvation = -3419.592109 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.53625 -41.49267 -39.32686 -37.81126 -37.56029 -35.95535 -34.13285 -32.45173 -30.70936 -28.65899 -26.99447 -26.53581 -24.63669 -22.99678 -21.28494 -20.92822 -20.30521 -20.01304 -18.34523 -18.18606 -17.64698 -16.99684 -16.99122 -16.58563 -16.27887 -15.88124 -15.74725 -15.35133 -15.05948 -14.81663 -14.49364 -14.43481 -13.86812 -13.77028 -13.47703 -13.44981 -13.20685 -12.71675 -12.45475 -12.17865 -11.83180 -11.55932 -11.33793 -10.99716 -10.76043 -10.51279 -10.10860 -9.94653 -9.28515 -4.84788 0.38245 1.37306 1.57627 1.68819 1.91849 2.08056 2.13199 2.28419 2.99037 3.10979 3.47861 3.53156 3.61761 3.69825 3.85211 3.98135 4.15426 4.17070 4.34547 4.39233 4.41912 4.60349 4.65182 4.73187 4.78813 4.83269 4.88353 4.95943 5.01847 5.03659 5.49032 5.58863 5.73569 6.36557 6.51914 6.61428 6.73480 6.88885 7.09985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.062 4.062 3 Si 0.792 3.208 4 C -0.224 4.224 5 C 0.058 3.942 6 N -0.515 5.515 7 C -0.068 4.068 8 C 0.590 3.410 9 O -0.574 6.574 10 N -0.678 5.678 11 C 0.148 3.852 12 C 0.073 3.927 13 O -0.582 6.582 14 C -0.147 4.147 15 C 0.087 3.913 16 H 0.095 0.905 17 O -0.566 6.566 18 C -0.141 4.141 19 C -0.108 4.108 20 H 0.384 0.616 21 H 0.108 0.892 22 H -0.270 1.270 23 H -0.311 1.311 24 H 0.216 0.784 25 H 0.435 0.565 26 H 0.407 0.593 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.393 0.607 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 2.317 -6.984 10.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.170 4.170 3 Si 0.695 3.305 4 C -0.230 4.230 5 C -0.080 4.080 6 N -0.112 5.112 7 C -0.181 4.181 8 C 0.379 3.621 9 O -0.453 6.453 10 N -0.328 5.328 11 C 0.061 3.939 12 C -0.006 4.006 13 O -0.390 6.390 14 C -0.185 4.185 15 C 0.027 3.973 16 H 0.113 0.887 17 O -0.374 6.374 18 C -0.179 4.179 19 C -0.135 4.135 20 H 0.233 0.767 21 H 0.126 0.874 22 H -0.196 1.196 23 H -0.240 1.240 24 H 0.232 0.768 25 H 0.276 0.724 26 H 0.243 0.757 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.243 0.757 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.946 2.306 -5.774 9.322 hybrid contribution -1.283 -0.362 -1.074 1.712 sum 5.663 1.944 -6.848 9.096 Atomic orbital electron populations 1.86558 1.19489 1.80573 1.49918 1.24802 0.82584 1.12385 0.97216 0.94265 0.89312 0.70198 0.76686 1.19888 1.07641 0.94957 1.00515 1.22376 1.00577 0.95953 0.89114 1.41869 1.39477 1.08386 1.21444 1.20198 1.09041 0.88261 1.00570 1.17222 0.78224 0.86206 0.80448 1.90796 1.45672 1.39234 1.69636 1.45106 1.53837 1.11364 1.22452 1.21428 0.93728 0.84501 0.94235 1.22506 0.93793 0.91220 0.93084 1.86379 1.39643 1.45236 1.67745 1.23960 0.93587 1.04445 0.96496 1.22744 0.93178 0.89783 0.91550 0.88703 1.86471 1.46714 1.52268 1.51942 1.23480 0.94857 0.99640 0.99921 1.21183 1.00486 0.96809 0.95011 0.76734 0.87377 1.19593 1.23955 0.76785 0.72423 0.75685 0.90365 0.94744 0.75730 0.86095 0.89264 0.75108 0.92898 0.86104 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.79 12.88 -148.98 -1.92 -5.71 16 2 C -0.06 -0.14 3.02 71.24 0.22 0.07 16 3 Si 0.79 -2.41 30.59 68.60 2.10 -0.31 16 4 C -0.22 -0.65 5.44 -20.12 -0.11 -0.76 16 5 C 0.06 -0.21 10.45 83.48 0.87 0.66 16 6 N -0.51 1.42 5.99 -183.63 -1.10 0.32 16 7 C -0.07 -0.44 7.05 40.35 0.28 -0.16 16 8 C 0.59 5.83 7.28 86.45 0.63 6.46 16 9 O -0.57 -10.27 14.87 -4.34 -0.06 -10.34 16 10 N -0.68 -1.85 4.53 -424.44 -1.92 -3.77 16 11 C 0.15 0.20 0.74 4.13 0.00 0.20 16 12 C 0.07 0.19 6.24 71.98 0.45 0.64 16 13 O -0.58 -1.51 13.54 -148.98 -2.02 -3.53 16 14 C -0.15 0.79 7.22 31.22 0.23 1.02 16 15 C 0.09 -0.35 5.28 31.21 0.16 -0.19 16 16 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 17 O -0.57 1.70 13.09 -148.98 -1.95 -0.25 16 18 C -0.14 -0.23 6.86 31.12 0.21 -0.02 16 19 C -0.11 -1.02 10.59 22.57 0.24 -0.78 16 20 H 0.38 0.23 8.70 -74.06 -0.64 -0.41 16 21 H 0.11 0.28 7.96 -2.39 -0.02 0.27 16 22 H -0.27 0.34 7.11 99.48 0.71 1.05 16 23 H -0.31 -1.82 7.11 99.48 0.71 -1.12 16 24 H 0.22 -2.59 6.19 -2.91 -0.02 -2.61 16 25 H 0.43 -4.24 8.20 -92.71 -0.76 -5.00 16 26 H 0.41 -1.05 7.80 -92.71 -0.72 -1.78 16 27 H 0.08 -0.21 8.08 -2.39 -0.02 -0.22 16 28 H 0.03 0.30 6.80 -2.39 -0.02 0.29 16 29 H 0.39 -1.74 9.12 -74.06 -0.68 -2.41 16 30 H 0.12 -0.99 8.06 -2.39 -0.02 -1.01 16 31 H 0.09 -0.60 8.09 -2.39 -0.02 -0.62 16 32 H 0.40 -4.74 9.12 -74.05 -0.68 -5.42 16 33 H 0.05 0.49 7.54 -2.39 -0.02 0.47 16 34 H 0.12 -0.26 8.10 -2.39 -0.02 -0.28 16 35 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 Total: 0.00 -28.43 299.83 -5.95 -34.37 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -2.26 Total: -17.94 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 3.19 Total: 7.15 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -3.02 Total: -3.45 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -5.95 Total: -19.82 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.10 Total: -0.31 kcal Total: -28.43 -5.95 -34.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_10543058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.812 kcal (2) G-P(sol) polarization free energy of solvation -28.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds