Wall clock time and date at job start Sun Mar 7 2021 08:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34854 * 125.89770 * 2 1 4 4 C 1.40936 * 107.46808 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.26653 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.46702 * 254.97236 * 5 4 3 7 7 Si 1.86302 * 109.47008 * 14.96915 * 5 4 3 8 8 C 1.34851 * 107.46620 * 359.75223 * 4 3 2 9 9 C 1.50698 * 125.89899 * 180.27743 * 8 4 3 10 10 N 1.36561 * 125.90239 * 179.97438 * 2 1 3 11 11 C 1.40226 * 125.66938 * 359.97438 * 10 2 1 12 12 C 1.38546 * 119.99328 * 295.26257 * 11 10 2 13 13 C 1.39504 * 119.77989 * 180.29464 * 12 11 10 14 14 C 1.47861 * 120.11525 * 179.71993 * 13 12 11 15 15 O 1.21551 * 119.99605 * 359.72577 * 14 13 12 16 16 N 1.34771 * 120.00542 * 179.72266 * 14 13 12 17 17 C 1.46496 * 120.00346 * 185.09443 * 16 14 13 18 18 C 1.53004 * 112.84917 * 64.95727 * 17 16 14 19 19 O 1.42903 * 109.46678 * 43.94112 * 18 17 16 20 20 C 1.53783 * 113.69175 * 196.22834 * 17 16 14 21 21 C 1.53780 * 87.08264 * 89.12601 * 20 17 16 22 22 H 1.08995 * 113.61552 * 139.97806 * 21 20 17 23 23 O 1.42893 * 113.61398 * 270.88591 * 21 20 17 24 24 C 1.53782 * 113.61645 * 293.76339 * 17 16 14 25 25 C 1.39578 * 119.77702 * 359.44542 * 13 12 11 26 26 C 1.38019 * 119.98290 * 0.27885 * 25 13 12 27 27 C 1.38226 * 120.21882 * 0.02562 * 26 25 13 28 28 H 1.09009 * 109.47116 * 270.00098 * 1 2 3 29 29 H 1.09000 * 109.47221 * 30.00229 * 1 2 3 30 30 H 1.08999 * 109.47084 * 150.00922 * 1 2 3 31 31 H 1.08008 * 126.26380 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47229 * 134.97255 * 5 4 3 33 33 H 0.96706 * 113.99446 * 180.02562 * 6 5 4 34 34 H 1.48496 * 110.00150 * 300.00231 * 7 5 4 35 35 H 1.48504 * 110.00100 * 61.32319 * 7 5 4 36 36 H 1.09003 * 109.47068 * 270.14063 * 9 8 4 37 37 H 1.08998 * 109.47480 * 30.13576 * 9 8 4 38 38 H 1.08999 * 109.47550 * 150.13933 * 9 8 4 39 39 H 1.07994 * 120.11139 * 0.03947 * 12 11 10 40 40 H 0.97002 * 119.99607 * 5.09280 * 16 14 13 41 41 H 1.08997 * 109.47377 * 283.93938 * 18 17 16 42 42 H 1.09003 * 109.46836 * 163.93404 * 18 17 16 43 43 H 0.96702 * 113.99639 * 179.97438 * 19 18 17 44 44 H 1.08998 * 113.61236 * 203.67688 * 20 17 16 45 45 H 1.08997 * 113.61295 * 334.57585 * 20 17 16 46 46 H 0.96699 * 114.00369 * 277.49030 * 23 21 20 47 47 H 1.09007 * 113.61033 * 25.34917 * 24 17 16 48 48 H 1.09000 * 113.61718 * 156.16419 * 24 17 16 49 49 H 1.07999 * 120.00934 * 180.29821 * 25 13 12 50 50 H 1.08005 * 119.89180 * 179.97438 * 26 25 13 51 51 H 1.07991 * 119.88711 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6469 -0.0006 5 6 4.8647 1.5178 -0.0003 6 8 5.4549 1.5088 -1.3016 7 14 4.3909 3.2612 0.4547 8 6 3.6121 -0.7015 0.0046 9 6 4.8178 -1.6055 0.0119 10 7 2.3078 -1.1062 0.0005 11 6 1.8645 -2.4365 0.0016 12 6 1.1601 -2.9309 1.0874 13 6 0.7266 -4.2569 1.0864 14 6 -0.0203 -4.7940 2.2440 15 8 -0.2532 -4.0813 3.2007 16 7 -0.4430 -6.0737 2.2383 17 6 -1.2779 -6.5743 3.3331 18 6 -2.6456 -5.8914 3.3973 19 8 -3.1896 -5.7902 2.0797 20 6 -1.3516 -8.1088 3.4021 21 6 -0.1090 -8.0494 4.3061 22 1 -0.1398 -8.7537 5.1374 23 8 1.1248 -8.0916 3.5866 24 6 -0.5515 -6.6268 4.6875 25 6 0.9953 -5.0733 -0.0134 26 6 1.6928 -4.5693 -1.0924 27 6 2.1276 -3.2572 -1.0884 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5137 31 1 1.9668 2.1206 0.0004 32 1 5.5811 1.1345 0.7263 33 1 6.2533 2.0495 -1.3751 34 1 3.4144 3.7951 -0.5283 35 1 3.8049 3.2887 1.8190 36 1 5.1132 -1.8254 -1.0140 37 1 5.6401 -1.1104 0.5285 38 1 4.5723 -2.5345 0.5264 39 1 0.9510 -2.2932 1.9334 40 1 -0.1943 -6.6634 1.5093 41 1 -2.5341 -4.8938 3.8220 42 1 -3.3165 -6.4800 4.0231 43 1 -4.0582 -5.3666 2.0444 44 1 -2.2424 -8.4808 3.9082 45 1 -1.1721 -8.5980 2.4448 46 1 1.4084 -8.9837 3.3440 47 1 0.2741 -5.9195 4.7678 48 1 -1.2234 -6.5921 5.5450 49 1 0.6572 -6.0990 -0.0201 50 1 1.9002 -5.2024 -1.9425 51 1 2.6733 -2.8685 -1.9354 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_12335854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:30 Heat of formation + Delta-G solvation = -51.332402 kcal Electronic energy + Delta-G solvation = -34874.619600 eV Core-core repulsion = 30321.657275 eV Total energy + Delta-G solvation = -4552.962325 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.04595 -41.93992 -40.43719 -39.06760 -37.63772 -37.57546 -35.97775 -34.83331 -33.91930 -33.76853 -32.30427 -30.57332 -30.28857 -28.67207 -27.31003 -26.99178 -25.57091 -24.86538 -23.73235 -23.26131 -21.99977 -21.21434 -20.43755 -20.18820 -18.83588 -18.38158 -18.28697 -18.12009 -17.47923 -17.43544 -17.30544 -16.64651 -16.47664 -16.03996 -15.91249 -15.72030 -15.58233 -15.23415 -15.06943 -14.98609 -14.91018 -14.84689 -14.33285 -14.24358 -13.90838 -13.80910 -13.73188 -13.64714 -13.45404 -13.31606 -13.27151 -13.21971 -13.01285 -12.72012 -12.70039 -12.55738 -12.41766 -12.21074 -11.96552 -11.53175 -11.24881 -10.99908 -10.77099 -10.51704 -10.34846 -10.17677 -10.00793 -9.67508 -9.01378 -4.95954 -0.48925 -0.13594 0.93978 1.37130 1.51784 1.58866 1.63307 1.72354 1.96723 2.08768 2.53574 3.00807 3.10330 3.41099 3.46620 3.53716 3.57549 3.60310 3.69394 3.75029 3.82183 3.85949 3.87509 4.04870 4.08544 4.12788 4.16971 4.25603 4.36287 4.38122 4.40866 4.45819 4.46829 4.50187 4.57773 4.62051 4.63416 4.64984 4.78992 4.80923 4.82995 4.89656 4.92726 4.95224 4.98633 5.01875 5.05304 5.06694 5.16702 5.44134 5.52349 5.76890 5.95956 6.31558 6.41660 6.72746 6.88582 7.02450 7.08795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.018 3.982 3 C -0.218 4.218 4 C -0.179 4.179 5 C -0.038 4.038 6 O -0.564 6.564 7 Si 0.787 3.213 8 C 0.045 3.955 9 C -0.077 4.077 10 N -0.404 5.404 11 C 0.096 3.904 12 C -0.065 4.065 13 C -0.129 4.129 14 C 0.562 3.438 15 O -0.577 6.577 16 N -0.669 5.669 17 C 0.147 3.853 18 C 0.075 3.925 19 O -0.581 6.581 20 C -0.149 4.149 21 C 0.085 3.915 22 H 0.094 0.906 23 O -0.567 6.567 24 C -0.143 4.143 25 C -0.064 4.064 26 C -0.097 4.097 27 C -0.083 4.083 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.399 0.601 34 H -0.302 1.302 35 H -0.304 1.304 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.412 0.588 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.393 0.607 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.399 0.601 47 H 0.051 0.949 48 H 0.119 0.881 49 H 0.163 0.837 50 H 0.178 0.822 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -8.119 -1.479 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.242 4.242 4 C -0.185 4.185 5 C -0.148 4.148 6 O -0.373 6.373 7 Si 0.694 3.306 8 C -0.065 4.065 9 C -0.135 4.135 10 N -0.079 5.079 11 C 0.007 3.993 12 C -0.086 4.086 13 C -0.133 4.133 14 C 0.350 3.650 15 O -0.458 6.458 16 N -0.319 5.319 17 C 0.060 3.940 18 C -0.003 4.003 19 O -0.388 6.388 20 C -0.186 4.186 21 C 0.026 3.974 22 H 0.112 0.888 23 O -0.375 6.375 24 C -0.181 4.181 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.103 4.103 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.101 0.899 33 H 0.249 0.751 34 H -0.230 1.230 35 H -0.232 1.232 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.250 0.750 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.242 0.758 44 H 0.142 0.858 45 H 0.110 0.890 46 H 0.249 0.751 47 H 0.070 0.930 48 H 0.137 0.863 49 H 0.180 0.820 50 H 0.195 0.805 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.028 -7.472 -0.784 7.513 hybrid contribution -0.902 -0.304 0.143 0.963 sum -0.930 -7.776 -0.640 7.857 Atomic orbital electron populations 1.20362 0.86618 1.03917 1.03014 1.20695 0.94493 0.85019 1.08891 1.20665 0.93203 0.97499 1.12844 1.18980 0.93988 0.92599 1.12955 1.24049 0.93859 1.08316 0.88580 1.86472 1.47144 1.74300 1.29391 0.95005 0.84629 0.76128 0.74792 1.20724 0.84693 0.94184 1.06900 1.20363 0.92422 0.97037 1.03634 1.41517 1.05678 1.03319 1.57381 1.17646 1.02262 0.83387 0.96024 1.21058 0.95973 0.95038 0.96504 1.19797 1.02908 0.94272 0.96332 1.18296 0.78439 0.82198 0.86052 1.90743 1.58913 1.59568 1.36619 1.45088 1.50979 1.10521 1.25327 1.21469 0.88684 0.95865 0.87987 1.22500 0.93611 0.99381 0.84856 1.86404 1.39921 1.84103 1.28388 1.23981 1.00461 0.91770 1.02414 1.22691 0.83739 0.96685 0.94326 0.88779 1.86475 1.38666 1.35495 1.76913 1.23492 1.00216 0.97164 0.97219 1.21755 0.94866 1.00389 0.91191 1.21446 0.96319 0.94241 0.99494 1.21626 0.98150 0.94452 0.96025 0.90913 0.88902 0.91422 0.85115 0.89911 0.75069 1.23039 1.23239 0.89680 0.88949 0.91774 0.86845 0.74983 0.95071 0.90035 0.75760 0.85773 0.89000 0.75075 0.93006 0.86285 0.81964 0.80476 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.92 71.24 0.71 0.11 16 2 C 0.02 0.22 6.80 41.04 0.28 0.50 16 3 C -0.22 -3.04 9.27 22.15 0.21 -2.83 16 4 C -0.18 -2.14 5.39 -19.98 -0.11 -2.25 16 5 C -0.04 -0.20 2.60 71.24 0.18 -0.01 16 6 O -0.56 -2.22 12.86 -148.98 -1.92 -4.13 16 7 Si 0.79 3.04 30.84 68.60 2.12 5.16 16 8 C 0.04 0.47 6.81 41.04 0.28 0.75 16 9 C -0.08 -0.31 9.73 71.24 0.69 0.38 16 10 N -0.40 -4.38 2.79 -320.37 -0.89 -5.28 16 11 C 0.10 0.70 4.65 38.04 0.18 0.88 16 12 C -0.07 -0.61 9.25 22.65 0.21 -0.40 16 13 C -0.13 -0.77 5.87 -20.10 -0.12 -0.88 16 14 C 0.56 5.21 7.33 86.79 0.64 5.85 16 15 O -0.58 -9.88 14.44 -3.88 -0.06 -9.94 16 16 N -0.67 -1.78 4.27 -423.36 -1.81 -3.59 16 17 C 0.15 0.15 0.83 4.13 0.00 0.15 16 18 C 0.08 0.11 6.26 71.98 0.45 0.56 16 19 O -0.58 -1.09 13.32 -148.98 -1.98 -3.08 16 20 C -0.15 0.87 7.19 31.12 0.22 1.09 16 21 C 0.08 -0.31 5.28 31.12 0.16 -0.15 16 22 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 23 O -0.57 1.16 13.09 -148.98 -1.95 -0.79 16 24 C -0.14 -0.29 6.79 31.12 0.21 -0.08 16 25 C -0.06 0.11 9.54 22.54 0.21 0.33 16 26 C -0.10 0.35 10.02 22.21 0.22 0.57 16 27 C -0.08 -0.13 9.73 22.44 0.22 0.09 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.44 7.83 -2.39 -0.02 0.42 16 31 H 0.13 1.77 6.55 -2.91 -0.02 1.75 16 32 H 0.08 0.09 7.49 -2.39 -0.02 0.07 16 33 H 0.40 -2.88 8.74 -74.05 -0.65 -3.53 16 34 H -0.30 -3.47 7.06 99.48 0.70 -2.77 16 35 H -0.30 -3.35 7.11 99.48 0.71 -2.64 16 36 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.09 0.15 7.50 -2.39 -0.02 0.14 16 38 H 0.06 0.23 7.83 -2.39 -0.02 0.21 16 39 H 0.11 1.62 7.65 -2.91 -0.02 1.60 16 40 H 0.41 -0.98 6.71 -92.71 -0.62 -1.60 16 41 H 0.03 0.22 7.43 -2.39 -0.02 0.20 16 42 H 0.08 -0.33 7.85 -2.39 -0.02 -0.35 16 43 H 0.39 -2.02 9.12 -74.06 -0.68 -2.69 16 44 H 0.12 -1.15 7.90 -2.39 -0.02 -1.17 16 45 H 0.09 -0.68 8.09 -2.39 -0.02 -0.70 16 46 H 0.40 -4.39 9.12 -74.06 -0.68 -5.06 16 47 H 0.05 0.53 7.28 -2.38 -0.02 0.51 16 48 H 0.12 -0.21 8.10 -2.39 -0.02 -0.23 16 49 H 0.16 -1.32 6.41 -2.91 -0.02 -1.34 16 50 H 0.18 -1.88 8.06 -2.91 -0.02 -1.90 16 51 H 0.14 0.00 8.06 -2.92 -0.02 -0.03 16 Total: 0.00 -32.56 419.32 -3.22 -35.78 By element: Atomic # 1 Polarization: -17.20 SS G_CDS: -1.58 Total: -18.78 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 4.86 Total: 4.65 kcal Atomic # 7 Polarization: -6.16 SS G_CDS: -2.70 Total: -8.86 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -5.91 Total: -17.94 kcal Atomic # 14 Polarization: 3.04 SS G_CDS: 2.12 Total: 5.16 kcal Total: -32.56 -3.22 -35.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_12335854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.557 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds