Wall clock time and date at job start Sun Mar 7 2021 08:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47623 * 2 1 4 4 C 1.53005 * 109.47650 * 185.09557 * 3 2 1 5 5 C 1.53001 * 109.47246 * 65.09268 * 3 2 1 6 6 C 1.50704 * 109.47283 * 175.04156 * 5 3 2 7 7 O 1.21281 * 119.99836 * 246.14427 * 6 5 3 8 8 N 1.34776 * 119.99753 * 66.13855 * 6 5 3 9 9 C 1.46504 * 119.99591 * 186.52901 * 8 6 5 10 10 C 1.53002 * 112.84811 * 58.53912 * 9 8 6 11 11 O 1.42904 * 109.46999 * 295.15451 * 10 9 8 12 12 C 1.53782 * 113.61372 * 189.73231 * 9 8 6 13 13 C 1.53785 * 87.07967 * 139.98396 * 12 9 8 14 14 H 1.08994 * 113.61703 * 89.20173 * 13 12 9 15 15 O 1.42906 * 113.60980 * 220.02046 * 13 12 9 16 16 C 1.53775 * 113.61650 * 287.23327 * 9 8 6 17 17 N 1.46504 * 109.46920 * 55.04062 * 5 3 2 18 18 C 1.36338 * 125.63265 * 65.53158 * 17 5 3 19 19 C 1.34852 * 108.21314 * 179.82876 * 18 17 5 20 20 C 1.40887 * 107.41916 * 0.42847 * 19 18 17 21 21 C 1.34849 * 107.41520 * 359.73055 * 20 19 18 22 22 C 1.50699 * 125.89147 * 179.97438 * 21 20 19 23 23 O 1.42894 * 109.47180 * 150.02595 * 22 21 20 24 24 Si 1.86303 * 109.46921 * 30.02941 * 22 21 20 25 25 H 1.09002 * 109.46720 * 294.85948 * 1 2 3 26 26 H 1.08997 * 109.47534 * 174.85610 * 1 2 3 27 27 H 1.09000 * 109.46921 * 54.85174 * 1 2 3 28 28 H 1.09005 * 109.47307 * 120.00227 * 2 1 3 29 29 H 1.09001 * 109.46767 * 239.99917 * 2 1 3 30 30 H 1.09002 * 109.47067 * 305.09194 * 3 2 1 31 31 H 1.09008 * 109.46875 * 66.87473 * 4 3 2 32 32 H 1.08995 * 109.47578 * 186.88159 * 4 3 2 33 33 H 1.09003 * 109.46962 * 306.88498 * 4 3 2 34 34 H 1.08998 * 109.47068 * 295.04098 * 5 3 2 35 35 H 0.96996 * 120.00449 * 6.53071 * 8 6 5 36 36 H 1.08995 * 109.47662 * 55.15609 * 10 9 8 37 37 H 1.09007 * 109.47039 * 175.16008 * 10 9 8 38 38 H 0.96698 * 114.00009 * 179.97438 * 11 10 9 39 39 H 1.09003 * 113.61303 * 254.52939 * 12 9 8 40 40 H 1.09002 * 113.61293 * 25.35221 * 12 9 8 41 41 H 0.96702 * 113.99292 * 179.97438 * 15 13 12 42 42 H 1.09009 * 113.61097 * 334.56110 * 16 9 8 43 43 H 1.08998 * 113.62047 * 105.46579 * 16 9 8 44 44 H 1.08001 * 125.89349 * 0.02562 * 18 17 5 45 45 H 1.08009 * 126.28777 * 180.16243 * 19 18 17 46 46 H 1.08003 * 126.29412 * 179.73992 * 20 19 18 47 47 H 1.09001 * 109.47632 * 270.03075 * 22 21 20 48 48 H 0.96701 * 114.00074 * 300.00118 * 23 22 21 49 49 H 1.48495 * 110.00205 * 58.67726 * 24 22 21 50 50 H 1.48497 * 110.00103 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5647 1.4443 -0.1281 5 6 1.6374 2.1258 1.3083 6 6 2.2425 3.5050 1.3617 7 8 3.0883 3.7644 2.1912 8 7 1.8437 4.4500 0.4874 9 6 2.5298 5.7438 0.4438 10 6 4.0249 5.6136 0.1459 11 8 4.6660 4.9216 1.2193 12 6 1.8166 6.7902 -0.4287 13 6 2.1744 7.8218 0.6542 14 1 3.1419 8.2993 0.4998 15 8 1.1289 8.7593 0.9194 16 6 2.2160 6.6483 1.6472 17 7 2.1233 1.3351 2.4419 18 6 3.4321 1.1227 2.7593 19 6 3.4780 0.3526 3.8654 20 6 2.1490 0.0715 4.2389 21 6 1.3415 0.6853 3.3504 22 6 -0.1652 0.6574 3.3596 23 8 -0.6676 1.8704 2.7955 24 14 -0.7725 0.4897 5.1128 25 1 -0.3633 0.4320 0.9325 26 1 -0.3634 -1.0235 -0.0921 27 1 -0.3633 0.5916 -0.8403 28 1 1.8933 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.6042 1.9819 -0.8409 31 1 3.8471 1.0693 -1.1119 32 1 3.9384 2.4608 -0.0057 33 1 3.9948 0.8038 0.6419 34 1 0.5513 2.2034 1.3584 35 1 1.1026 4.2737 -0.1129 36 1 4.1637 5.0560 -0.7802 37 1 4.4623 6.6066 0.0412 38 1 5.6178 4.8023 1.0976 39 1 2.3094 6.9712 -1.3839 40 1 0.7454 6.6163 -0.5311 41 1 1.3479 9.4105 1.5999 42 1 1.2537 6.4365 2.1134 43 1 3.0311 6.7148 2.3679 44 1 4.2849 1.5076 2.2199 45 1 4.3698 0.0104 4.3695 46 1 1.8347 -0.5258 5.0821 47 1 -0.5166 -0.1900 2.7708 48 1 -0.3941 2.6675 3.2698 49 1 -0.2738 1.6222 5.9337 50 1 -2.2570 0.4603 5.1356 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_12360566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:40 Heat of formation + Delta-G solvation = -72.189312 kcal Electronic energy + Delta-G solvation = -33440.300066 eV Core-core repulsion = 29243.800260 eV Total energy + Delta-G solvation = -4196.499806 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.85123 -41.53568 -39.65557 -38.02102 -37.59200 -37.28233 -36.15167 -33.95571 -32.89288 -31.49312 -30.57479 -28.63106 -27.67040 -26.95924 -26.06223 -24.76664 -23.98739 -22.00675 -21.62012 -21.33479 -20.34606 -20.07151 -19.04684 -18.52585 -18.24222 -17.95580 -17.14336 -16.96546 -16.64136 -16.57404 -16.18321 -15.93002 -15.37277 -15.28150 -14.93152 -14.80372 -14.60509 -14.53829 -14.38346 -14.13950 -14.11251 -13.70989 -13.68584 -13.55896 -13.42346 -13.14013 -13.06697 -12.76861 -12.55327 -12.38338 -12.24917 -12.16133 -11.91411 -11.84325 -11.77975 -11.72534 -11.61069 -11.04838 -10.88251 -10.82368 -10.56213 -9.99536 -9.43481 -8.80400 -4.91012 1.05208 1.47409 1.61047 1.66074 1.78072 1.94045 2.20421 2.35189 2.93323 3.08442 3.22628 3.41547 3.45927 3.58343 3.62758 3.68071 3.73506 3.82865 3.99502 4.09528 4.21026 4.27261 4.33136 4.34769 4.41744 4.43754 4.48485 4.54002 4.61967 4.65027 4.68753 4.70289 4.77126 4.80236 4.87742 4.89232 4.95175 5.01019 5.07223 5.15127 5.19655 5.28774 5.38778 5.43590 5.47418 5.52137 6.04157 6.25135 6.37888 6.39281 6.57269 6.75685 6.89448 7.30781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.086 4.086 4 C -0.158 4.158 5 C 0.102 3.898 6 C 0.499 3.501 7 O -0.502 6.502 8 N -0.710 5.710 9 C 0.158 3.842 10 C 0.081 3.919 11 O -0.552 6.552 12 C -0.115 4.115 13 C 0.081 3.919 14 H 0.102 0.898 15 O -0.576 6.576 16 C -0.163 4.163 17 N -0.408 5.408 18 C 0.019 3.981 19 C -0.229 4.229 20 C -0.197 4.197 21 C -0.030 4.030 22 C -0.051 4.051 23 O -0.539 6.539 24 Si 0.788 3.212 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.152 0.848 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.376 0.624 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.396 0.604 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.160 0.840 47 H 0.135 0.865 48 H 0.381 0.619 49 H -0.304 1.304 50 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 0.096 -4.988 4.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.105 4.105 4 C -0.215 4.215 5 C -0.004 4.004 6 C 0.283 3.717 7 O -0.374 6.374 8 N -0.364 5.364 9 C 0.071 3.929 10 C 0.002 3.998 11 O -0.357 6.357 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.120 0.880 15 O -0.384 6.384 16 C -0.202 4.202 17 N -0.084 5.084 18 C -0.112 4.112 19 C -0.253 4.253 20 C -0.221 4.221 21 C -0.140 4.140 22 C -0.160 4.160 23 O -0.346 6.346 24 Si 0.693 3.307 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.223 0.777 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.246 0.754 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.173 0.827 45 H 0.156 0.844 46 H 0.178 0.822 47 H 0.152 0.848 48 H 0.230 0.770 49 H -0.231 1.231 50 H -0.216 1.216 Dipole moment (debyes) X Y Z Total from point charges -0.834 0.065 -4.678 4.753 hybrid contribution 0.991 1.497 -0.220 1.809 sum 0.157 1.562 -4.899 5.144 Atomic orbital electron populations 1.21975 0.94995 1.02309 1.02718 1.21490 0.96574 0.94763 1.02248 1.21462 0.97087 0.97461 0.94474 1.22117 0.94795 1.01884 1.02731 1.21950 1.03141 0.88240 0.87021 1.20679 0.82850 0.86394 0.81768 1.90857 1.30785 1.80675 1.35101 1.45745 1.36886 1.13949 1.39870 1.21406 0.91940 0.81954 0.97552 1.22260 0.90280 0.97030 0.90200 1.87028 1.25562 1.79017 1.44124 1.23315 1.02357 0.91525 0.98064 1.23284 0.91435 0.87639 0.95479 0.88041 1.86464 1.42186 1.46771 1.62959 1.23897 1.01507 0.96976 0.97848 1.43481 1.05326 1.38316 1.21253 1.21849 0.86425 1.02989 0.99928 1.21046 0.97924 1.06540 0.99775 1.20843 0.92583 1.06622 1.02090 1.20851 0.93581 1.04796 0.94802 1.24893 0.88550 0.89714 1.12836 1.86423 1.76011 1.16368 1.55828 0.93413 0.76520 0.88215 0.72542 0.91836 0.92429 0.91971 0.92711 0.91090 0.87854 0.91314 0.92976 0.92273 0.83160 0.75370 0.92529 0.91386 0.77684 0.87685 0.87931 0.75410 0.90939 0.92190 0.82711 0.84422 0.82214 0.84780 0.77040 1.23119 1.21555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.37 9.54 71.98 0.69 1.05 16 2 C -0.11 0.13 5.27 30.59 0.16 0.29 16 3 C -0.09 0.17 2.30 -10.79 -0.02 0.15 16 4 C -0.16 0.03 8.00 71.98 0.58 0.61 16 5 C 0.10 0.08 2.11 44.25 0.09 0.18 16 6 C 0.50 1.69 5.02 87.66 0.44 2.13 16 7 O -0.50 -5.48 11.35 20.72 0.24 -5.25 16 8 N -0.71 1.14 5.26 -420.53 -2.21 -1.07 16 9 C 0.16 -0.22 1.08 4.13 0.00 -0.21 16 10 C 0.08 -0.17 6.39 71.98 0.46 0.29 16 11 O -0.55 -1.91 9.79 -125.23 -1.23 -3.13 16 12 C -0.11 0.52 7.20 31.12 0.22 0.74 16 13 C 0.08 -0.17 4.86 31.12 0.15 -0.02 16 14 H 0.10 -0.54 7.61 -2.39 -0.02 -0.56 16 15 O -0.58 -0.23 13.67 -148.98 -2.04 -2.27 16 16 C -0.16 -0.39 6.80 31.12 0.21 -0.17 16 17 N -0.41 -1.83 1.49 -491.50 -0.73 -2.57 16 18 C 0.02 0.14 7.67 83.21 0.64 0.78 16 19 C -0.23 -1.72 10.86 22.14 0.24 -1.48 16 20 C -0.20 -0.96 9.43 22.14 0.21 -0.75 16 21 C -0.03 -0.12 5.90 41.08 0.24 0.13 16 22 C -0.05 -0.01 2.04 71.24 0.15 0.14 16 23 O -0.54 -0.28 9.01 -148.98 -1.34 -1.62 16 24 Si 0.79 0.13 31.14 68.60 2.14 2.27 16 25 H 0.06 -0.06 3.73 -2.39 -0.01 -0.07 16 26 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.05 0.16 7.09 -2.38 -0.02 0.14 16 29 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.05 0.10 6.82 -2.39 -0.02 0.09 16 33 H 0.06 0.16 5.22 -2.39 -0.01 0.15 16 34 H 0.15 -0.07 3.95 -2.39 -0.01 -0.08 16 35 H 0.41 -2.61 8.67 -92.71 -0.80 -3.41 16 36 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.07 -0.35 7.32 -2.38 -0.02 -0.37 16 38 H 0.38 -1.09 9.12 -74.06 -0.68 -1.76 16 39 H 0.10 -0.85 8.10 -2.39 -0.02 -0.87 16 40 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.40 -2.62 9.12 -74.06 -0.68 -3.30 16 42 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.06 0.41 8.02 -2.39 -0.02 0.39 16 44 H 0.16 1.25 6.20 -2.91 -0.02 1.23 16 45 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 46 H 0.16 -0.04 6.89 -2.91 -0.02 -0.06 16 47 H 0.13 -0.33 6.89 -2.39 -0.02 -0.35 16 48 H 0.38 -0.35 8.70 -74.06 -0.64 -0.99 16 49 H -0.30 -2.38 7.11 99.48 0.71 -1.68 16 50 H -0.29 -1.58 7.11 99.48 0.71 -0.87 16 Total: 0.00 -20.50 377.02 -2.48 -22.98 By element: Atomic # 1 Polarization: -11.43 SS G_CDS: -1.76 Total: -13.19 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.46 Total: 3.85 kcal Atomic # 7 Polarization: -0.69 SS G_CDS: -2.95 Total: -3.63 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -4.37 Total: -12.27 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 2.14 Total: 2.27 kcal Total: -20.50 -2.48 -22.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_12360566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.209 kcal (2) G-P(sol) polarization free energy of solvation -20.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds