Wall clock time and date at job start Sun Mar 7 2021 08:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86291 * 109.47228 * 2 1 4 4 C 1.50698 * 109.46870 * 120.00402 * 2 1 3 5 5 C 1.35091 * 126.07418 * 255.34585 * 4 2 1 6 6 N 1.35040 * 107.98016 * 180.12441 * 5 4 2 7 7 C 1.46498 * 125.93235 * 179.83755 * 6 5 4 8 8 C 1.50696 * 109.47060 * 124.71774 * 7 6 5 9 9 O 1.21276 * 120.00504 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99704 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99764 * 184.94621 * 10 8 7 12 12 C 1.53001 * 112.84991 * 284.20924 * 11 10 8 13 13 O 1.42899 * 109.46920 * 312.72786 * 12 11 10 14 14 C 1.53784 * 113.61552 * 55.40716 * 11 10 8 15 15 C 1.53778 * 87.07989 * 139.98106 * 14 11 10 16 16 H 1.08993 * 113.61458 * 89.11827 * 15 14 11 17 17 O 1.42902 * 113.61068 * 220.02030 * 15 14 11 18 18 C 1.53777 * 113.61149 * 152.90176 * 11 10 8 19 19 N 1.40071 * 108.13837 * 359.57670 * 6 5 4 20 20 C 1.31628 * 108.10766 * 0.26151 * 19 6 5 21 21 C 1.48415 * 126.03720 * 179.97438 * 20 19 6 22 22 C 1.39322 * 120.12042 * 144.75114 * 21 20 19 23 23 C 1.38021 * 119.87814 * 179.72256 * 22 21 20 24 24 C 1.38314 * 120.12151 * 0.55069 * 23 22 21 25 25 C 1.38321 * 120.23936 * 359.72256 * 24 23 22 26 26 C 1.38014 * 120.12210 * 0.02562 * 25 24 23 27 27 H 0.96703 * 113.99826 * 59.99862 * 1 2 3 28 28 H 1.08999 * 109.46623 * 239.99847 * 2 1 3 29 29 H 1.48497 * 110.00307 * 298.67875 * 3 2 1 30 30 H 1.48501 * 110.00225 * 60.00179 * 3 2 1 31 31 H 1.08005 * 126.00919 * 0.02562 * 5 4 2 32 32 H 1.09004 * 109.46798 * 4.71833 * 7 6 5 33 33 H 1.09003 * 109.46992 * 244.72299 * 7 6 5 34 34 H 0.97001 * 119.99825 * 4.94321 * 10 8 7 35 35 H 1.08998 * 109.46692 * 72.72260 * 12 11 10 36 36 H 1.08991 * 109.47176 * 192.72445 * 12 11 10 37 37 H 0.96706 * 113.99955 * 180.02562 * 13 12 11 38 38 H 1.09002 * 113.61366 * 254.52823 * 14 11 10 39 39 H 1.09004 * 113.61199 * 25.43080 * 14 11 10 40 40 H 0.96699 * 113.99695 * 180.02562 * 17 15 14 41 41 H 1.08995 * 113.62102 * 334.56795 * 18 11 10 42 42 H 1.09009 * 113.61345 * 105.38983 * 18 11 10 43 43 H 1.08000 * 120.05675 * 359.97055 * 22 21 20 44 44 H 1.08005 * 119.93739 * 180.27504 * 23 22 21 45 45 H 1.08001 * 119.88167 * 179.74768 * 24 23 22 46 46 H 1.08004 * 119.93913 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.06790 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4568 -0.1247 2.3284 6 7 2.7872 -1.0991 3.2030 7 6 3.3915 -0.9011 4.5228 8 6 2.5374 -1.5660 5.5713 9 8 1.5240 -2.1484 5.2480 10 7 2.8999 -1.5134 6.8684 11 6 2.1305 -2.2498 7.8743 12 6 0.8003 -1.5754 8.2159 13 8 1.0179 -0.1818 8.4451 14 6 1.9998 -3.7520 7.5719 15 6 2.2055 -3.9927 9.0767 16 1 1.2786 -3.9890 9.6502 17 8 3.0354 -5.1189 9.3680 18 6 2.9552 -2.6504 9.1089 19 7 2.4461 -2.3318 2.6318 20 6 1.9299 -2.1028 1.4429 21 6 1.4344 -3.1304 0.4935 22 6 0.3291 -2.8635 -0.3116 23 6 -0.1240 -3.8206 -1.1968 24 6 0.5102 -5.0472 -1.2774 25 6 1.6045 -5.3196 -0.4764 26 6 2.0691 -4.3679 0.4086 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8900 29 1 1.5880 2.4585 -1.2242 30 1 1.5616 2.4678 1.2085 31 1 2.5909 0.9363 2.4794 32 1 3.4612 0.1661 4.7340 33 1 4.3893 -1.3397 4.5350 34 1 3.6702 -0.9880 7.1357 35 1 0.1048 -1.7030 7.3864 36 1 0.3823 -2.0304 9.1138 37 1 0.2156 0.3102 8.6676 38 1 1.0114 -4.0410 7.2145 39 1 2.8064 -4.1445 6.9526 40 1 3.1682 -5.2757 10.3130 41 1 4.0230 -2.7417 8.9100 42 1 2.7392 -2.0492 9.9922 43 1 -0.1698 -1.9079 -0.2459 44 1 -0.9780 -3.6131 -1.8245 45 1 0.1499 -5.7948 -1.9685 46 1 2.0962 -6.2788 -0.5436 47 1 2.9238 -4.5813 1.0333 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_12622748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:54 Heat of formation + Delta-G solvation = -19.482962 kcal Electronic energy + Delta-G solvation = -32552.603844 eV Core-core repulsion = 28091.134322 eV Total energy + Delta-G solvation = -4461.469522 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.51479 -41.71511 -39.95305 -39.55349 -37.87303 -37.59660 -36.20470 -34.87337 -34.07710 -32.38487 -31.86465 -31.45942 -29.05221 -28.02567 -27.06378 -25.96264 -24.62191 -23.64458 -23.45334 -21.87037 -21.45974 -20.79038 -20.11800 -19.02402 -18.59991 -18.48634 -18.31383 -18.10688 -17.55280 -16.86059 -16.74374 -16.44119 -16.29439 -15.94529 -15.81457 -15.60012 -15.46489 -15.07856 -14.87452 -14.77860 -14.48217 -14.33454 -14.14801 -13.79825 -13.68574 -13.66243 -13.57456 -13.35593 -13.32454 -12.86524 -12.76331 -12.39477 -12.16436 -12.00256 -11.86873 -11.81445 -11.48238 -11.35270 -11.03025 -10.93919 -10.59992 -10.31950 -10.20067 -9.87640 -9.76227 -9.30148 -4.85738 0.06785 0.47150 0.76696 1.29189 1.39455 1.47638 1.66699 1.68301 2.00210 2.01891 2.88396 2.88672 3.11847 3.29459 3.34007 3.54305 3.57571 3.58418 3.68529 3.72998 3.88283 3.96273 4.03085 4.08999 4.10925 4.13817 4.20081 4.29411 4.32670 4.39184 4.47526 4.52280 4.59211 4.61764 4.64891 4.78014 4.83670 4.85396 4.90199 5.00650 5.02996 5.16873 5.30548 5.41677 5.57193 5.61036 5.63841 5.87960 6.05589 6.44166 6.58370 6.68779 6.69217 6.82994 7.14894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.053 4.053 3 Si 0.780 3.220 4 C -0.225 4.225 5 C 0.072 3.928 6 N -0.358 5.358 7 C 0.110 3.890 8 C 0.496 3.504 9 O -0.558 6.558 10 N -0.694 5.694 11 C 0.155 3.845 12 C 0.088 3.912 13 O -0.575 6.575 14 C -0.126 4.126 15 C 0.082 3.918 16 H 0.105 0.895 17 O -0.577 6.577 18 C -0.146 4.146 19 N -0.291 5.291 20 C 0.108 3.892 21 C -0.036 4.036 22 C -0.116 4.116 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.109 4.109 27 H 0.392 0.608 28 H 0.076 0.924 29 H -0.285 1.285 30 H -0.282 1.282 31 H 0.213 0.787 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.419 0.581 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 5.471 3.196 7.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.161 4.161 3 Si 0.682 3.318 4 C -0.237 4.237 5 C -0.073 4.073 6 N -0.139 5.139 7 C -0.013 4.013 8 C 0.282 3.718 9 O -0.434 6.434 10 N -0.347 5.347 11 C 0.068 3.932 12 C 0.009 3.991 13 O -0.383 6.383 14 C -0.164 4.164 15 C 0.023 3.977 16 H 0.123 0.877 17 O -0.385 6.385 18 C -0.184 4.184 19 N -0.113 5.113 20 C -0.057 4.057 21 C -0.038 4.038 22 C -0.134 4.134 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.128 4.128 27 H 0.242 0.758 28 H 0.094 0.906 29 H -0.212 1.212 30 H -0.208 1.208 31 H 0.229 0.771 32 H 0.190 0.810 33 H 0.162 0.838 34 H 0.257 0.743 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.169 0.831 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.592 4.513 3.795 7.474 hybrid contribution -1.864 0.473 -0.216 1.935 sum 2.728 4.986 3.579 6.717 Atomic orbital electron populations 1.86529 1.19264 1.79734 1.50959 1.24359 0.83366 1.12140 0.96214 0.94050 0.89869 0.70492 0.77368 1.19603 1.12850 0.91811 0.99398 1.22740 0.98877 0.96506 0.89182 1.48063 1.48159 1.03608 1.14117 1.21959 0.97026 1.06140 0.76213 1.21062 0.86038 0.80555 0.84190 1.90802 1.26959 1.44053 1.81608 1.45539 1.32861 1.51347 1.04991 1.21407 0.92301 0.89837 0.89675 1.22174 0.94703 0.82581 0.99627 1.86360 1.39048 1.19732 1.93153 1.23272 1.02278 0.94172 0.96690 1.23266 0.94074 0.85037 0.95361 0.87725 1.86511 1.71019 1.49022 1.31967 1.23896 1.00705 0.96821 0.96929 1.77678 1.20692 1.04131 1.08798 1.20920 0.98800 0.93699 0.92329 1.18036 0.97186 0.92485 0.96107 1.22011 0.95135 1.01604 0.94698 1.21425 1.00732 0.93586 0.98927 1.21604 0.95342 0.97495 0.99030 1.21357 0.97550 0.99718 0.96187 1.21310 1.00044 0.92830 0.98657 0.75755 0.90577 1.21184 1.20835 0.77064 0.80971 0.83843 0.74270 0.95040 0.90445 0.75308 0.91951 0.90596 0.74995 0.87893 0.88300 0.83130 0.83708 0.83543 0.84000 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.36 10.08 -148.98 -1.50 -3.86 16 2 C -0.05 -0.14 1.99 71.24 0.14 0.01 16 3 Si 0.78 -2.11 30.79 68.60 2.11 0.01 16 4 C -0.23 -1.77 5.37 -19.95 -0.11 -1.87 16 5 C 0.07 0.26 9.96 83.47 0.83 1.09 16 6 N -0.36 -2.33 3.40 -351.91 -1.20 -3.52 16 7 C 0.11 -0.27 6.99 85.63 0.60 0.33 16 8 C 0.50 2.45 7.53 87.65 0.66 3.11 16 9 O -0.56 -9.06 14.38 -3.02 -0.04 -9.10 16 10 N -0.69 0.49 4.94 -420.54 -2.08 -1.59 16 11 C 0.15 0.14 0.92 4.13 0.00 0.15 16 12 C 0.09 0.08 6.35 71.98 0.46 0.54 16 13 O -0.58 0.35 13.39 -148.98 -1.99 -1.64 16 14 C -0.13 -0.70 6.03 31.12 0.19 -0.51 16 15 C 0.08 -0.06 4.87 31.12 0.15 0.09 16 16 H 0.11 -0.48 7.67 -2.39 -0.02 -0.50 16 17 O -0.58 -0.79 13.67 -148.98 -2.04 -2.83 16 18 C -0.15 0.52 7.22 31.12 0.22 0.75 16 19 N -0.29 -4.37 11.63 -48.16 -0.56 -4.93 16 20 C 0.11 1.48 6.74 42.53 0.29 1.77 16 21 C -0.04 -0.47 5.80 -20.04 -0.12 -0.59 16 22 C -0.12 -1.17 8.94 22.48 0.20 -0.97 16 23 C -0.13 -0.79 10.03 22.24 0.22 -0.57 16 24 C -0.12 -0.59 10.04 22.31 0.22 -0.37 16 25 C -0.13 -0.92 10.03 22.24 0.22 -0.70 16 26 C -0.11 -1.25 9.75 22.48 0.22 -1.03 16 27 H 0.39 -1.75 8.74 -74.06 -0.65 -2.39 16 28 H 0.08 0.10 7.84 -2.39 -0.02 0.09 16 29 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 30 H -0.28 -0.49 7.03 99.48 0.70 0.21 16 31 H 0.21 -1.06 6.36 -2.91 -0.02 -1.08 16 32 H 0.17 -2.08 8.07 -2.38 -0.02 -2.10 16 33 H 0.14 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.42 -3.12 8.77 -92.71 -0.81 -3.93 16 35 H 0.03 0.22 7.72 -2.39 -0.02 0.20 16 36 H 0.08 -0.28 7.36 -2.39 -0.02 -0.30 16 37 H 0.40 -2.99 9.12 -74.05 -0.68 -3.67 16 38 H 0.06 0.59 8.10 -2.39 -0.02 0.57 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.40 -3.19 9.12 -74.06 -0.68 -3.86 16 41 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.10 -0.61 8.10 -2.38 -0.02 -0.63 16 43 H 0.15 1.41 4.52 -2.91 -0.01 1.40 16 44 H 0.15 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 46 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 47 H 0.12 1.35 8.06 -2.91 -0.02 1.32 16 Total: 0.00 -36.49 393.14 -4.61 -41.09 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: -1.72 Total: -14.84 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.41 Total: 1.22 kcal Atomic # 7 Polarization: -6.21 SS G_CDS: -3.83 Total: -10.05 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -5.58 Total: -17.43 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.11 Total: 0.01 kcal Total: -36.49 -4.61 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_12622748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.611 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds