Wall clock time and date at job start Sun Mar 7 2021 09:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47409 * 2 1 4 4 C 1.50694 * 109.47257 * 120.00285 * 2 1 3 5 5 C 1.38587 * 120.32447 * 65.02187 * 4 2 1 6 6 C 1.38632 * 118.48657 * 179.97438 * 5 4 2 7 7 C 1.39266 * 119.06525 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72454 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99679 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00021 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99959 * 175.30464 * 10 8 7 12 12 C 1.52996 * 112.84955 * 303.53780 * 11 10 8 13 13 O 1.42902 * 109.47366 * 305.24143 * 12 11 10 14 14 C 1.53782 * 113.61656 * 74.73615 * 11 10 8 15 15 C 1.53785 * 87.08317 * 139.97747 * 14 11 10 16 16 H 1.09001 * 113.60808 * 89.19902 * 15 14 11 17 17 O 1.42893 * 113.61680 * 220.01924 * 15 14 11 18 18 C 1.53782 * 113.61427 * 172.34170 * 11 10 8 19 19 N 1.32749 * 120.55077 * 0.02562 * 7 6 5 20 20 C 1.31489 * 121.64584 * 359.97438 * 19 7 6 21 21 H 0.96702 * 113.99473 * 300.00038 * 1 2 3 22 22 H 1.09003 * 109.46799 * 240.00291 * 2 1 3 23 23 H 1.48509 * 110.00121 * 300.00780 * 3 2 1 24 24 H 1.48501 * 109.99763 * 61.31864 * 3 2 1 25 25 H 1.08003 * 120.75708 * 359.97438 * 5 4 2 26 26 H 1.08003 * 120.46500 * 180.27303 * 6 5 4 27 27 H 0.97001 * 120.00067 * 355.29605 * 10 8 7 28 28 H 1.09001 * 109.46850 * 65.24088 * 12 11 10 29 29 H 1.09007 * 109.47278 * 185.23979 * 12 11 10 30 30 H 0.96697 * 114.00375 * 180.02562 * 13 12 11 31 31 H 1.08996 * 113.61816 * 254.52935 * 14 11 10 32 32 H 1.09007 * 113.61274 * 25.34758 * 14 11 10 33 33 H 0.96700 * 114.00257 * 180.02562 * 17 15 14 34 34 H 1.09005 * 113.61575 * 334.56932 * 18 11 10 35 35 H 1.09008 * 113.61340 * 105.47068 * 18 11 10 36 36 H 1.07996 * 119.55065 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6883 -2.0636 1.4053 6 6 2.1684 -2.6789 2.5510 7 6 2.8747 -1.9202 3.4811 8 6 3.3939 -2.5629 4.7111 9 8 3.2031 -3.7472 4.9047 10 7 4.0777 -1.8339 5.6151 11 6 4.5018 -2.4435 6.8779 12 6 3.3361 -3.0344 7.6733 13 8 2.3401 -2.0299 7.8763 14 6 5.6948 -3.4023 6.7290 15 6 6.2296 -2.8160 8.0463 16 1 5.8731 -3.3393 8.9336 17 8 7.6444 -2.6157 8.0511 18 6 5.4265 -1.5448 7.7158 19 7 3.0859 -0.6259 3.2754 20 6 2.6418 -0.0172 2.1977 21 1 -0.3932 0.4417 0.7651 22 1 1.7923 -0.5138 -0.8900 23 1 1.5614 2.4680 -1.2085 24 1 1.5879 2.4585 1.2243 25 1 1.1375 -2.6259 0.6658 26 1 2.0012 -3.7328 2.7177 27 1 4.2892 -0.9055 5.4296 28 1 2.9040 -3.8679 7.1196 29 1 3.6975 -3.3881 8.6390 30 1 1.5700 -2.3348 8.3752 31 1 5.4205 -4.4549 6.7991 32 1 6.3242 -3.1856 5.8658 33 1 7.9868 -2.2475 8.8771 34 1 5.9832 -0.8183 7.1238 35 1 4.9358 -1.0998 8.5815 36 1 2.8327 1.0374 2.0649 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341542_13287726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:24 Heat of formation + Delta-G solvation = -87.887523 kcal Electronic energy + Delta-G solvation = -22124.736353 eV Core-core repulsion = 18577.017776 eV Total energy + Delta-G solvation = -3547.718577 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01999 -41.26056 -39.44498 -38.04982 -37.50450 -36.16927 -34.38748 -33.38286 -32.89759 -28.51002 -27.60805 -26.97659 -25.08278 -24.63339 -23.31948 -21.68392 -20.09493 -19.22852 -18.97367 -18.68450 -18.14311 -17.70307 -16.87012 -16.69132 -16.46922 -16.40842 -16.16149 -15.93993 -15.47203 -15.02345 -14.74800 -14.42680 -14.36419 -14.35093 -13.73623 -13.58960 -13.43354 -13.19813 -12.95500 -12.70292 -12.13567 -11.87412 -11.76936 -11.41805 -11.07972 -10.99836 -10.85298 -10.77485 -10.49377 -10.31807 -10.00806 -5.09592 -0.54872 0.07559 1.09502 1.45529 1.66466 1.84047 1.99898 2.71990 2.88959 2.95155 3.18136 3.20919 3.30091 3.43378 3.58280 3.65453 3.68872 3.73946 3.92514 3.98007 4.12676 4.23880 4.33680 4.35065 4.54451 4.58631 4.66178 4.71088 4.84772 4.91367 4.94433 4.97129 5.06242 5.36891 5.50580 6.20969 6.38900 6.60092 6.62134 6.67592 7.19656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.073 4.073 3 Si 0.686 3.314 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.109 4.109 7 C 0.083 3.917 8 C 0.578 3.422 9 O -0.530 6.530 10 N -0.686 5.686 11 C 0.157 3.843 12 C 0.080 3.920 13 O -0.566 6.566 14 C -0.124 4.124 15 C 0.079 3.921 16 H 0.087 0.913 17 O -0.555 6.555 18 C -0.164 4.164 19 N -0.452 5.452 20 C 0.102 3.898 21 H 0.378 0.622 22 H 0.125 0.875 23 H -0.251 1.251 24 H -0.255 1.255 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.414 0.586 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.382 0.618 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.381 0.619 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 1.625 1.456 2.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.184 4.184 3 Si 0.587 3.413 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.130 4.130 7 C -0.055 4.055 8 C 0.363 3.637 9 O -0.406 6.406 10 N -0.337 5.337 11 C 0.070 3.930 12 C 0.001 3.999 13 O -0.372 6.372 14 C -0.163 4.163 15 C 0.019 3.981 16 H 0.105 0.895 17 O -0.360 6.360 18 C -0.202 4.202 19 N -0.163 5.163 20 C -0.057 4.057 21 H 0.226 0.774 22 H 0.143 0.857 23 H -0.176 1.176 24 H -0.180 1.180 25 H 0.165 0.835 26 H 0.170 0.830 27 H 0.251 0.749 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.229 0.771 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.754 1.872 0.785 2.683 hybrid contribution -1.876 -0.296 0.661 2.011 sum -0.122 1.576 1.446 2.143 Atomic orbital electron populations 1.86637 1.17205 1.79983 1.49386 1.25008 0.84267 1.11343 0.97756 0.94966 0.91441 0.74022 0.80915 1.21575 0.99639 0.95771 0.98209 1.21558 0.95836 0.93750 0.96718 1.22216 0.95507 1.02271 0.92970 1.21187 0.98364 0.90240 0.95712 1.17815 0.77799 0.85884 0.82188 1.90766 1.58124 1.14657 1.77020 1.45576 1.55879 1.15863 1.16390 1.21418 0.91888 0.95634 0.84054 1.22277 0.88652 0.90995 0.97945 1.86451 1.32707 1.39042 1.78983 1.23446 0.94752 1.00051 0.98031 1.23228 0.81012 0.95665 0.98176 0.89484 1.86542 1.20849 1.86564 1.42080 1.24034 0.97191 0.98239 1.00698 1.67539 1.18311 1.09429 1.21031 1.22683 0.94170 1.00036 0.88856 0.77426 0.85746 1.17573 1.17965 0.83504 0.83019 0.74935 0.91039 0.92453 0.77083 0.89656 0.88117 0.77094 0.88194 0.89712 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.07 12.84 -35.23 -0.45 -0.39 16 2 C -0.07 0.12 2.82 36.00 0.10 0.23 16 3 Si 0.69 -1.58 29.91 -169.99 -5.08 -6.66 16 4 C -0.15 0.11 5.37 -104.36 -0.56 -0.45 16 5 C -0.05 0.01 9.83 -39.31 -0.39 -0.37 16 6 C -0.11 -0.13 9.63 -39.05 -0.38 -0.51 16 7 C 0.08 0.20 6.75 -83.01 -0.56 -0.36 16 8 C 0.58 2.01 7.47 -12.18 -0.09 1.92 16 9 O -0.53 -2.89 14.48 5.35 0.08 -2.82 16 10 N -0.69 -1.25 5.15 -47.69 -0.25 -1.50 16 11 C 0.16 0.14 0.86 -131.01 -0.11 0.03 16 12 C 0.08 0.05 6.00 37.16 0.22 0.28 16 13 O -0.57 -0.66 13.53 -35.23 -0.48 -1.13 16 14 C -0.12 -0.12 7.02 -25.92 -0.18 -0.31 16 15 C 0.08 -0.05 4.86 -25.83 -0.13 -0.17 16 16 H 0.09 -0.20 7.61 -51.93 -0.40 -0.59 16 17 O -0.55 -0.18 13.67 -35.23 -0.48 -0.66 16 18 C -0.16 0.10 7.21 -25.83 -0.19 -0.08 16 19 N -0.45 -0.76 9.55 -9.80 -0.09 -0.85 16 20 C 0.10 -0.02 9.84 -17.56 -0.17 -0.19 16 21 H 0.38 -1.06 8.70 45.56 0.40 -0.67 16 22 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 23 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 24 H -0.25 0.12 7.01 56.52 0.40 0.52 16 25 H 0.15 -0.26 8.06 -52.48 -0.42 -0.68 16 26 H 0.15 0.12 7.64 -52.48 -0.40 -0.28 16 27 H 0.41 0.40 8.00 -40.82 -0.33 0.07 16 28 H 0.07 0.16 6.54 -51.93 -0.34 -0.18 16 29 H 0.06 -0.08 7.32 -51.93 -0.38 -0.46 16 30 H 0.38 -1.03 9.12 45.56 0.42 -0.61 16 31 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 32 H 0.10 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.38 -1.48 9.12 45.56 0.42 -1.06 16 34 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.08 -0.08 8.10 -51.92 -0.42 -0.50 16 36 H 0.16 -0.39 4.86 -52.49 -0.25 -0.64 16 LS Contribution 308.32 15.07 4.65 4.65 Total: 0.00 -8.94 308.32 -7.13 -16.07 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: -2.60 Total: -6.72 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.43 Total: 0.01 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -0.34 Total: -2.35 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -1.33 Total: -4.99 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.08 Total: -6.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -8.94 -7.13 -16.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_13287726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.817 kcal (2) G-P(sol) polarization free energy of solvation -8.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds