Wall clock time and date at job start Sun Mar 7 2021 09:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47409 * 2 1 4 4 C 1.50694 * 109.47257 * 120.00285 * 2 1 3 5 5 C 1.38587 * 120.32447 * 65.02187 * 4 2 1 6 6 C 1.38632 * 118.48657 * 179.97438 * 5 4 2 7 7 C 1.39266 * 119.06525 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72454 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99679 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00021 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99959 * 175.30464 * 10 8 7 12 12 C 1.52996 * 112.84955 * 303.53780 * 11 10 8 13 13 O 1.42902 * 109.47366 * 305.24143 * 12 11 10 14 14 C 1.53782 * 113.61656 * 74.73615 * 11 10 8 15 15 C 1.53785 * 87.08317 * 139.97747 * 14 11 10 16 16 H 1.09001 * 113.60808 * 89.19902 * 15 14 11 17 17 O 1.42893 * 113.61680 * 220.01924 * 15 14 11 18 18 C 1.53782 * 113.61427 * 172.34170 * 11 10 8 19 19 N 1.32749 * 120.55077 * 0.02562 * 7 6 5 20 20 C 1.31489 * 121.64584 * 359.97438 * 19 7 6 21 21 H 0.96702 * 113.99473 * 300.00038 * 1 2 3 22 22 H 1.09003 * 109.46799 * 240.00291 * 2 1 3 23 23 H 1.48509 * 110.00121 * 300.00780 * 3 2 1 24 24 H 1.48501 * 109.99763 * 61.31864 * 3 2 1 25 25 H 1.08003 * 120.75708 * 359.97438 * 5 4 2 26 26 H 1.08003 * 120.46500 * 180.27303 * 6 5 4 27 27 H 0.97001 * 120.00067 * 355.29605 * 10 8 7 28 28 H 1.09001 * 109.46850 * 65.24088 * 12 11 10 29 29 H 1.09007 * 109.47278 * 185.23979 * 12 11 10 30 30 H 0.96697 * 114.00375 * 180.02562 * 13 12 11 31 31 H 1.08996 * 113.61816 * 254.52935 * 14 11 10 32 32 H 1.09007 * 113.61274 * 25.34758 * 14 11 10 33 33 H 0.96700 * 114.00257 * 180.02562 * 17 15 14 34 34 H 1.09005 * 113.61575 * 334.56932 * 18 11 10 35 35 H 1.09008 * 113.61340 * 105.47068 * 18 11 10 36 36 H 1.07996 * 119.55065 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6883 -2.0636 1.4053 6 6 2.1684 -2.6789 2.5510 7 6 2.8747 -1.9202 3.4811 8 6 3.3939 -2.5629 4.7111 9 8 3.2031 -3.7472 4.9047 10 7 4.0777 -1.8339 5.6151 11 6 4.5018 -2.4435 6.8779 12 6 3.3361 -3.0344 7.6733 13 8 2.3401 -2.0299 7.8763 14 6 5.6948 -3.4023 6.7290 15 6 6.2296 -2.8160 8.0463 16 1 5.8731 -3.3393 8.9336 17 8 7.6444 -2.6157 8.0511 18 6 5.4265 -1.5448 7.7158 19 7 3.0859 -0.6259 3.2754 20 6 2.6418 -0.0172 2.1977 21 1 -0.3932 0.4417 0.7651 22 1 1.7923 -0.5138 -0.8900 23 1 1.5614 2.4680 -1.2085 24 1 1.5879 2.4585 1.2243 25 1 1.1375 -2.6259 0.6658 26 1 2.0012 -3.7328 2.7177 27 1 4.2892 -0.9055 5.4296 28 1 2.9040 -3.8679 7.1196 29 1 3.6975 -3.3881 8.6390 30 1 1.5700 -2.3348 8.3752 31 1 5.4205 -4.4549 6.7991 32 1 6.3242 -3.1856 5.8658 33 1 7.9868 -2.2475 8.8771 34 1 5.9832 -0.8183 7.1238 35 1 4.9358 -1.0998 8.5815 36 1 2.8327 1.0374 2.0649 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_13287726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:24 Heat of formation + Delta-G solvation = -96.144730 kcal Electronic energy + Delta-G solvation = -22125.094413 eV Core-core repulsion = 18577.017776 eV Total energy + Delta-G solvation = -3548.076636 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09955 -41.27817 -39.56866 -38.01464 -37.53009 -36.21220 -34.46825 -33.44482 -32.92420 -28.53215 -27.61671 -26.98948 -25.09827 -24.65236 -23.31110 -21.76972 -20.17287 -19.31323 -18.96773 -18.65406 -18.16585 -17.71622 -16.87713 -16.72757 -16.50501 -16.38646 -16.20976 -16.01134 -15.51029 -15.09792 -14.74865 -14.44264 -14.42094 -14.33850 -13.72238 -13.59361 -13.46145 -13.26034 -13.01007 -12.64442 -12.15531 -11.89488 -11.78582 -11.51535 -11.09441 -10.98178 -10.87413 -10.70265 -10.57395 -10.39101 -10.11878 -4.93244 -0.61165 0.06632 1.23447 1.52729 1.58383 1.90547 1.95235 2.64400 2.88511 2.93537 3.24115 3.32664 3.34706 3.48787 3.61287 3.65650 3.71011 3.76422 3.91211 4.02610 4.11010 4.24116 4.37895 4.46095 4.54741 4.58699 4.65358 4.69705 4.85238 4.88431 4.93690 4.97362 5.06370 5.36025 5.41397 6.27282 6.40841 6.59923 6.74382 6.87360 7.02986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.077 4.077 3 Si 0.765 3.235 4 C -0.140 4.140 5 C -0.052 4.052 6 C -0.116 4.116 7 C 0.063 3.937 8 C 0.572 3.428 9 O -0.559 6.559 10 N -0.681 5.681 11 C 0.147 3.853 12 C 0.083 3.917 13 O -0.582 6.582 14 C -0.131 4.131 15 C 0.087 3.913 16 H 0.109 0.891 17 O -0.575 6.575 18 C -0.153 4.153 19 N -0.463 5.463 20 C 0.099 3.901 21 H 0.388 0.612 22 H 0.138 0.862 23 H -0.297 1.297 24 H -0.276 1.276 25 H 0.163 0.837 26 H 0.150 0.850 27 H 0.417 0.583 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.397 0.603 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 2.268 1.732 3.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.186 4.186 3 Si 0.669 3.331 4 C -0.142 4.142 5 C -0.077 4.077 6 C -0.137 4.137 7 C -0.074 4.074 8 C 0.358 3.642 9 O -0.437 6.437 10 N -0.331 5.331 11 C 0.060 3.940 12 C 0.004 3.996 13 O -0.390 6.390 14 C -0.170 4.170 15 C 0.028 3.972 16 H 0.126 0.874 17 O -0.384 6.384 18 C -0.191 4.191 19 N -0.174 5.174 20 C -0.061 4.061 21 H 0.238 0.762 22 H 0.155 0.845 23 H -0.225 1.225 24 H -0.202 1.202 25 H 0.181 0.819 26 H 0.167 0.833 27 H 0.254 0.746 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.246 0.754 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.883 2.514 1.103 3.330 hybrid contribution -1.948 -0.446 0.526 2.066 sum -0.065 2.069 1.629 2.634 Atomic orbital electron populations 1.86615 1.17923 1.80363 1.50228 1.25198 0.83730 1.11977 0.97746 0.94050 0.90161 0.71749 0.77146 1.21679 0.98787 0.95533 0.98225 1.21757 0.95480 0.94131 0.96382 1.22282 0.95686 1.02279 0.93414 1.21145 0.99575 0.90852 0.95864 1.18075 0.77719 0.85710 0.82732 1.90737 1.59442 1.15768 1.77774 1.45616 1.55122 1.15879 1.16513 1.21624 0.92194 0.96191 0.83965 1.22250 0.88422 0.90197 0.98723 1.86406 1.33582 1.39533 1.79491 1.23432 0.95006 0.99891 0.98668 1.23234 0.80783 0.95368 0.97812 0.87356 1.86496 1.21253 1.86844 1.43777 1.23964 0.96553 0.98049 1.00511 1.67518 1.18850 1.09121 1.21928 1.23056 0.93782 1.00907 0.88369 0.76249 0.84455 1.22499 1.20217 0.81937 0.83254 0.74588 0.93121 0.90032 0.75358 0.90244 0.89761 0.75029 0.88363 0.88804 0.79942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.56 12.84 -148.98 -1.91 -1.35 16 2 C -0.08 0.34 2.82 71.23 0.20 0.54 16 3 Si 0.76 -4.01 29.91 68.60 2.05 -1.96 16 4 C -0.14 0.30 5.37 -19.70 -0.11 0.20 16 5 C -0.05 0.04 9.83 22.45 0.22 0.26 16 6 C -0.12 -0.40 9.63 22.61 0.22 -0.18 16 7 C 0.06 0.39 6.75 41.89 0.28 0.67 16 8 C 0.57 5.01 7.47 86.88 0.65 5.66 16 9 O -0.56 -7.40 14.48 -3.76 -0.05 -7.45 16 10 N -0.68 -3.37 5.15 -423.09 -2.18 -5.55 16 11 C 0.15 0.37 0.86 4.13 0.00 0.37 16 12 C 0.08 0.15 6.00 71.98 0.43 0.58 16 13 O -0.58 -1.46 13.53 -148.98 -2.02 -3.48 16 14 C -0.13 -0.41 7.02 31.12 0.22 -0.19 16 15 C 0.09 -0.14 4.86 31.18 0.15 0.01 16 16 H 0.11 -0.64 7.61 -2.39 -0.02 -0.66 16 17 O -0.58 -0.14 13.67 -148.98 -2.04 -2.18 16 18 C -0.15 0.23 7.21 31.18 0.22 0.46 16 19 N -0.46 -1.77 9.55 -184.92 -1.77 -3.54 16 20 C 0.10 -0.08 9.84 84.83 0.83 0.75 16 21 H 0.39 -2.43 8.70 -74.06 -0.64 -3.07 16 22 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 23 H -0.30 -0.80 7.11 99.48 0.71 -0.10 16 24 H -0.28 0.47 7.01 99.48 0.70 1.17 16 25 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 26 H 0.15 0.49 7.64 -2.91 -0.02 0.47 16 27 H 0.42 1.26 8.00 -92.71 -0.74 0.51 16 28 H 0.05 0.31 6.54 -2.39 -0.02 0.29 16 29 H 0.08 -0.29 7.32 -2.38 -0.02 -0.31 16 30 H 0.40 -2.09 9.12 -74.06 -0.68 -2.77 16 31 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 32 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.40 -3.44 9.12 -74.06 -0.68 -4.12 16 34 H 0.10 -0.11 8.14 -2.38 -0.02 -0.13 16 35 H 0.09 -0.29 8.10 -2.38 -0.02 -0.31 16 36 H 0.18 -1.06 4.86 -2.91 -0.01 -1.07 16 Total: 0.00 -21.20 308.32 -6.12 -27.32 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -1.54 Total: -10.94 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.33 Total: 9.13 kcal Atomic # 7 Polarization: -5.14 SS G_CDS: -3.94 Total: -9.09 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -6.02 Total: -14.46 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.05 Total: -1.96 kcal Total: -21.20 -6.12 -27.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_13287726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.823 kcal (2) G-P(sol) polarization free energy of solvation -21.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds