Wall clock time and date at job start Sun Mar 7 2021 09:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86302 * 109.47098 * 2 1 4 4 C 1.50701 * 109.47127 * 120.00228 * 2 1 3 5 5 C 1.34851 * 125.89873 * 217.65550 * 4 2 1 6 6 C 1.40939 * 107.46730 * 179.97438 * 5 4 2 7 7 C 1.34849 * 107.47063 * 359.97438 * 6 5 4 8 8 N 1.36566 * 125.89831 * 37.34816 * 4 2 1 9 9 C 1.40202 * 125.67137 * 0.02562 * 8 4 2 10 10 C 1.38827 * 120.06304 * 235.48886 * 9 8 4 11 11 C 1.38129 * 119.93177 * 179.70037 * 10 9 8 12 12 C 1.38279 * 120.06355 * 0.59342 * 11 10 9 13 13 C 1.50704 * 119.93393 * 179.70405 * 12 11 10 14 14 C 1.50696 * 109.46902 * 269.97798 * 13 12 11 15 15 O 1.21283 * 120.00222 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00016 * 180.02562 * 14 13 12 17 17 C 1.46506 * 120.00159 * 174.94359 * 16 14 13 18 18 C 1.52995 * 112.84381 * 293.43913 * 17 16 14 19 19 O 1.42897 * 109.47526 * 304.23841 * 18 17 16 20 20 C 1.53779 * 113.61179 * 64.63404 * 17 16 14 21 21 C 1.53786 * 87.07889 * 139.98422 * 20 17 16 22 22 H 1.08997 * 113.61431 * 89.19570 * 21 20 17 23 23 O 1.42897 * 113.61461 * 220.01842 * 21 20 17 24 24 C 1.53780 * 113.61324 * 162.13348 * 17 16 14 25 25 C 1.38269 * 120.12970 * 359.67992 * 12 11 10 26 26 C 1.38126 * 120.07308 * 0.02562 * 25 12 11 27 27 H 0.96693 * 113.99765 * 295.31833 * 1 2 3 28 28 H 1.09001 * 109.46820 * 240.00230 * 2 1 3 29 29 H 1.48498 * 109.99719 * 178.68324 * 3 2 1 30 30 H 1.48499 * 109.99913 * 300.00125 * 3 2 1 31 31 H 1.07996 * 126.26468 * 359.94139 * 5 4 2 32 32 H 1.07995 * 126.26796 * 180.02562 * 6 5 4 33 33 H 1.08003 * 125.90526 * 179.97438 * 7 6 5 34 34 H 1.07996 * 120.03729 * 359.97349 * 10 9 8 35 35 H 1.07999 * 119.96468 * 180.29493 * 11 10 9 36 36 H 1.09001 * 109.46902 * 29.97343 * 13 12 11 37 37 H 1.08991 * 109.46741 * 149.97771 * 13 12 11 38 38 H 0.97001 * 119.99645 * 354.93911 * 16 14 13 39 39 H 1.09003 * 109.47202 * 64.24112 * 18 17 16 40 40 H 1.09006 * 109.46716 * 184.23995 * 18 17 16 41 41 H 0.96701 * 114.00109 * 180.02562 * 19 18 17 42 42 H 1.08994 * 113.61445 * 254.52839 * 20 17 16 43 43 H 1.08995 * 113.61861 * 25.43847 * 20 17 16 44 44 H 0.96707 * 114.00120 * 179.97438 * 23 21 20 45 45 H 1.08997 * 113.61654 * 334.56694 * 24 17 16 46 46 H 1.09000 * 113.61180 * 105.47098 * 24 17 16 47 47 H 1.08009 * 119.96716 * 180.02562 * 25 12 11 48 48 H 1.07990 * 120.03828 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 3.0104 -0.3612 1.9601 6 6 3.1231 -1.2857 3.0178 7 6 2.1086 -2.1658 2.8962 8 7 1.3692 -1.8157 1.8025 9 6 0.2248 -2.4821 1.3421 10 6 -0.8556 -2.6771 2.1918 11 6 -1.9841 -3.3285 1.7335 12 6 -2.0336 -3.7970 0.4334 13 6 -3.2637 -4.5132 -0.0615 14 6 -3.1233 -5.9909 0.1986 15 8 -2.1228 -6.4203 0.7328 16 7 -4.1093 -6.8355 -0.1634 17 6 -3.9276 -8.2814 -0.0125 18 6 -2.8476 -8.8441 -0.9386 19 8 -3.1557 -8.5037 -2.2918 20 6 -3.7826 -8.7346 1.4498 21 6 -4.6579 -9.9436 1.0795 22 1 -4.0889 -10.8007 0.7193 23 8 -5.6082 -10.2926 2.0879 24 6 -5.2446 -9.0746 -0.0455 25 6 -0.9568 -3.6093 -0.4134 26 6 0.1721 -2.9532 0.0373 27 1 -0.3932 0.3778 0.7985 28 1 1.7924 -0.5138 -0.8900 29 1 3.5347 1.7702 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 3.6680 0.4738 1.7686 32 1 3.8824 -1.2884 3.7858 33 1 1.9129 -3.0013 3.5519 34 1 -0.8155 -2.3160 3.2088 35 1 -2.8267 -3.4763 2.3927 36 1 -4.1407 -4.1337 0.4628 37 1 -3.3778 -4.3419 -1.1318 38 1 -4.9393 -6.4860 -0.5238 39 1 -1.8803 -8.4203 -0.6685 40 1 -2.8103 -9.9288 -0.8362 41 1 -2.5119 -8.8294 -2.9357 42 1 -2.7624 -9.0022 1.7249 43 1 -4.2515 -8.0589 2.1650 44 1 -6.1621 -11.0521 1.8606 45 1 -6.1132 -8.4917 0.2609 46 1 -5.4046 -9.6165 -0.9776 47 1 -0.9984 -3.9759 -1.4285 48 1 1.0129 -2.8073 -0.6245 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_13287746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:31 Heat of formation + Delta-G solvation = -48.449640 kcal Electronic energy + Delta-G solvation = -32115.726598 eV Core-core repulsion = 27718.426898 eV Total energy + Delta-G solvation = -4397.299700 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.72334 -41.76246 -40.37751 -39.25130 -37.69449 -37.54926 -36.15803 -34.87165 -34.02252 -32.16689 -31.73542 -31.05502 -28.49487 -27.61304 -26.98327 -26.08093 -24.35330 -23.97991 -23.08463 -21.49170 -21.38256 -20.65656 -20.06666 -19.31698 -18.94921 -18.34919 -18.00888 -17.38548 -17.15601 -17.06074 -16.54235 -16.36242 -16.12099 -15.84055 -15.81021 -15.43310 -15.38685 -14.94981 -14.76235 -14.62402 -14.50889 -14.44472 -14.20423 -13.97891 -13.74927 -13.58793 -13.38495 -13.28846 -13.22352 -13.13950 -12.77301 -12.61832 -12.23970 -12.07080 -12.00286 -11.89373 -11.73900 -11.24539 -10.96608 -10.73934 -10.65773 -10.26036 -10.09451 -10.00845 -9.25091 -9.10632 -4.95837 -0.00896 0.33500 1.06581 1.32916 1.63581 1.63893 1.85221 1.94639 2.07080 2.11928 2.69122 2.91591 3.23400 3.35426 3.35973 3.61670 3.64099 3.66219 3.68344 3.74143 3.86432 3.92718 4.03505 4.11617 4.20986 4.28408 4.30829 4.37074 4.39447 4.47508 4.49236 4.52097 4.59062 4.62020 4.64659 4.70174 4.81896 4.89447 4.94429 4.95374 5.08514 5.16936 5.19286 5.21366 5.33592 5.49276 5.51318 5.77141 5.90509 6.14812 6.46954 6.55420 6.60755 6.72902 6.84565 7.26618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.051 4.051 3 Si 0.806 3.194 4 C -0.020 4.020 5 C -0.202 4.202 6 C -0.199 4.199 7 C -0.017 4.017 8 N -0.395 5.395 9 C 0.116 3.884 10 C -0.118 4.118 11 C -0.094 4.094 12 C -0.063 4.063 13 C -0.099 4.099 14 C 0.516 3.484 15 O -0.570 6.570 16 N -0.702 5.702 17 C 0.153 3.847 18 C 0.086 3.914 19 O -0.577 6.577 20 C -0.125 4.125 21 C 0.081 3.919 22 H 0.103 0.897 23 O -0.576 6.576 24 C -0.149 4.149 25 C -0.098 4.098 26 C -0.107 4.107 27 H 0.389 0.611 28 H 0.100 0.900 29 H -0.281 1.281 30 H -0.292 1.292 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.415 0.585 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.397 0.603 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.398 0.602 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.133 0.867 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.533 -1.398 -1.028 5.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.160 4.160 3 Si 0.709 3.291 4 C -0.130 4.130 5 C -0.226 4.226 6 C -0.223 4.223 7 C -0.144 4.144 8 N -0.069 5.069 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.113 4.113 12 C -0.063 4.063 13 C -0.138 4.138 14 C 0.304 3.696 15 O -0.449 6.449 16 N -0.355 5.355 17 C 0.066 3.934 18 C 0.007 3.993 19 O -0.385 6.385 20 C -0.164 4.164 21 C 0.021 3.979 22 H 0.120 0.880 23 O -0.385 6.385 24 C -0.188 4.188 25 C -0.116 4.116 26 C -0.126 4.126 27 H 0.238 0.762 28 H 0.118 0.882 29 H -0.208 1.208 30 H -0.219 1.219 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.192 0.808 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.252 0.748 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.246 0.754 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.249 0.751 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.151 0.849 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.776 -0.771 -1.187 4.981 hybrid contribution 0.486 -1.403 -0.799 1.686 sum -4.290 -2.175 -1.986 5.204 Atomic orbital electron populations 1.86468 1.16950 1.86161 1.45810 1.25065 0.85292 1.11094 0.94597 0.92979 0.77659 0.74090 0.84345 1.21239 0.98917 0.92422 1.00411 1.20982 0.99687 1.03702 0.98255 1.21181 1.01323 0.97652 1.02095 1.22319 0.95475 1.03551 0.93096 1.41558 1.20686 1.21855 1.22762 1.17719 0.86711 0.98618 0.94281 1.21144 0.91924 1.00537 1.00069 1.21091 0.98134 0.96842 0.95208 1.19525 0.95347 0.97418 0.94051 1.20748 0.97898 0.89591 1.05592 1.20920 0.82447 0.89220 0.77021 1.90719 1.31315 1.79442 1.43379 1.45750 1.19114 1.05110 1.65491 1.21368 0.96871 0.80839 0.94295 1.22171 0.96176 0.98871 0.82079 1.86382 1.54459 1.81381 1.16311 1.23312 1.00078 0.97213 0.95753 1.23279 0.90628 0.95811 0.88155 0.87959 1.86499 1.52281 1.55051 1.44643 1.23881 0.96094 0.98337 1.00439 1.20980 0.92322 0.97941 1.00396 1.20911 0.98888 0.98172 0.94648 0.76244 0.88249 1.20794 1.21916 0.83080 0.82739 0.80835 0.84464 0.83632 0.84986 0.85739 0.74779 0.94217 0.90827 0.75360 0.91279 0.89936 0.75107 0.88067 0.88961 0.84875 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.53 10.81 -148.98 -1.61 -3.14 16 2 C -0.05 -0.15 2.48 71.24 0.18 0.02 16 3 Si 0.81 -0.04 31.11 68.60 2.13 2.09 16 4 C -0.02 -0.11 6.05 41.04 0.25 0.14 16 5 C -0.20 -1.04 9.40 22.15 0.21 -0.83 16 6 C -0.20 -1.01 10.86 22.15 0.24 -0.77 16 7 C -0.02 -0.10 11.21 83.18 0.93 0.84 16 8 N -0.40 -2.59 2.84 -333.40 -0.95 -3.53 16 9 C 0.12 0.72 4.68 38.08 0.18 0.90 16 10 C -0.12 -0.40 9.76 22.38 0.22 -0.19 16 11 C -0.09 -0.17 9.69 22.25 0.22 0.05 16 12 C -0.06 -0.13 4.37 -19.85 -0.09 -0.22 16 13 C -0.10 0.33 5.83 29.10 0.17 0.50 16 14 C 0.52 1.24 7.48 87.66 0.66 1.90 16 15 O -0.57 -6.21 14.44 -3.04 -0.04 -6.26 16 16 N -0.70 0.92 5.14 -420.54 -2.16 -1.24 16 17 C 0.15 -0.03 0.85 4.13 0.00 -0.02 16 18 C 0.09 0.00 6.21 71.98 0.45 0.45 16 19 O -0.58 0.43 13.54 -148.98 -2.02 -1.58 16 20 C -0.12 -0.33 6.39 31.12 0.20 -0.13 16 21 C 0.08 -0.16 4.86 31.12 0.15 -0.01 16 22 H 0.10 -0.55 7.61 -2.39 -0.02 -0.57 16 23 O -0.58 -0.01 13.67 -148.98 -2.04 -2.04 16 24 C -0.15 0.54 7.22 31.12 0.22 0.77 16 25 C -0.10 -0.44 9.69 22.25 0.22 -0.22 16 26 C -0.11 -0.74 8.51 22.38 0.19 -0.55 16 27 H 0.39 -1.15 8.76 -74.06 -0.65 -1.79 16 28 H 0.10 0.45 7.96 -2.39 -0.02 0.43 16 29 H -0.28 -1.19 6.86 99.48 0.68 -0.51 16 30 H -0.29 -1.75 7.11 99.48 0.71 -1.04 16 31 H 0.15 0.38 6.44 -2.91 -0.02 0.36 16 32 H 0.15 0.23 8.06 -2.91 -0.02 0.20 16 33 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 35 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 36 H 0.13 -1.16 8.08 -2.39 -0.02 -1.17 16 37 H 0.12 -0.85 8.08 -2.39 -0.02 -0.87 16 38 H 0.42 -2.67 8.71 -92.71 -0.81 -3.47 16 39 H 0.04 0.20 7.21 -2.39 -0.02 0.18 16 40 H 0.07 -0.28 7.32 -2.38 -0.02 -0.30 16 41 H 0.40 -3.11 9.12 -74.06 -0.68 -3.78 16 42 H 0.07 0.36 8.10 -2.39 -0.02 0.34 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.40 -3.50 9.12 -74.05 -0.68 -4.18 16 45 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.09 -0.46 8.10 -2.39 -0.02 -0.48 16 47 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 48 H 0.11 0.87 8.06 -2.92 -0.02 0.85 16 Total: 0.00 -24.66 400.29 -3.86 -28.52 By element: Atomic # 1 Polarization: -13.69 SS G_CDS: -1.77 Total: -15.46 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.59 Total: 2.64 kcal Atomic # 7 Polarization: -1.67 SS G_CDS: -3.11 Total: -4.78 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -5.71 Total: -13.02 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.13 Total: 2.09 kcal Total: -24.66 -3.86 -28.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_13287746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.927 kcal (2) G-P(sol) polarization free energy of solvation -24.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds