Wall clock time and date at job start Sun Mar 7 2021 09:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.46952 * 2 1 4 4 C 1.50689 * 109.47230 * 119.99965 * 2 1 3 5 5 C 1.34855 * 125.89410 * 245.02428 * 4 2 1 6 6 C 1.40897 * 107.41823 * 179.97438 * 5 4 2 7 7 C 1.34849 * 107.41356 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.88382 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47097 * 85.02918 * 8 7 6 10 10 O 1.21286 * 119.99904 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00117 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00053 * 174.76426 * 11 9 8 13 13 C 1.52994 * 112.85201 * 293.73301 * 12 11 9 14 14 O 1.42904 * 109.47415 * 305.11233 * 13 12 11 15 15 C 1.53784 * 113.61262 * 64.93329 * 12 11 9 16 16 C 1.53781 * 87.08289 * 139.97919 * 15 12 11 17 17 H 1.09000 * 113.61569 * 89.11445 * 16 15 12 18 18 O 1.42897 * 113.61583 * 219.93677 * 16 15 12 19 19 C 1.53780 * 87.07882 * 334.56705 * 16 15 12 20 20 N 1.36336 * 108.22256 * 0.26400 * 7 6 5 21 21 H 0.96701 * 114.00549 * 299.99865 * 1 2 3 22 22 H 1.09004 * 109.46873 * 240.00642 * 2 1 3 23 23 H 1.48497 * 109.99869 * 178.68222 * 3 2 1 24 24 H 1.48500 * 110.00132 * 300.00226 * 3 2 1 25 25 H 1.07999 * 126.28685 * 0.02562 * 5 4 2 26 26 H 1.07998 * 126.28560 * 180.02562 * 6 5 4 27 27 H 1.08991 * 109.47480 * 325.02557 * 8 7 6 28 28 H 1.09000 * 109.46918 * 205.02552 * 8 7 6 29 29 H 0.97001 * 120.00018 * 355.04564 * 11 9 8 30 30 H 1.09010 * 109.47357 * 65.11458 * 13 12 11 31 31 H 1.09007 * 109.47455 * 185.11123 * 13 12 11 32 32 H 0.96695 * 113.99801 * 179.97438 * 14 13 12 33 33 H 1.08998 * 113.61042 * 254.53093 * 15 12 11 34 34 H 1.08998 * 113.61269 * 25.42726 * 15 12 11 35 35 H 0.96699 * 114.00604 * 179.97438 * 18 16 15 36 36 H 1.09000 * 113.61547 * 270.88197 * 19 16 15 37 37 H 1.09000 * 113.61416 * 139.98254 * 19 16 15 38 38 H 0.97000 * 125.63580 * 179.73322 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 2.6298 -0.1485 2.2379 6 6 2.8970 -1.1603 3.1814 7 6 2.3511 -2.3017 2.7146 8 6 2.3917 -3.6442 3.3981 9 6 1.2600 -3.7380 4.3887 10 8 0.4959 -2.8063 4.5265 11 7 1.0968 -4.8574 5.1215 12 6 0.0693 -4.9068 6.1645 13 6 0.3559 -3.9538 7.3265 14 8 1.6572 -4.2220 7.8527 15 6 -1.3655 -4.8017 5.6211 16 6 -1.7528 -5.8686 6.6587 17 1 -2.0471 -5.4536 7.6227 18 8 -2.6801 -6.8372 6.1651 19 6 -0.2881 -6.3346 6.6100 20 7 1.7619 -2.0330 1.5149 21 1 -0.3934 0.4417 0.7650 22 1 1.7923 -0.5138 -0.8901 23 1 3.5345 1.7703 0.0321 24 1 1.5614 2.4680 -1.2084 25 1 2.9286 0.8869 2.3089 26 1 3.4386 -1.0430 4.1083 27 1 3.3418 -3.7576 3.9200 28 1 2.2895 -4.4340 2.6538 29 1 1.6625 -5.6289 4.9610 30 1 0.3127 -2.9241 6.9712 31 1 -0.3894 -4.0998 8.1085 32 1 1.9066 -3.6533 8.5939 33 1 -1.8295 -3.8315 5.7984 34 1 -1.4675 -5.1386 4.5895 35 1 -2.9273 -7.5112 6.8130 36 1 -0.0955 -7.0906 5.8488 37 1 0.1177 -6.6019 7.5857 38 1 1.2970 -2.6760 0.9570 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341542_14644196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:01 Heat of formation + Delta-G solvation = -86.780786 kcal Electronic energy + Delta-G solvation = -22703.711554 eV Core-core repulsion = 19128.729490 eV Total energy + Delta-G solvation = -3574.982064 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27943 -41.58861 -39.51789 -37.64158 -37.53895 -36.15221 -34.10790 -32.81975 -31.81829 -29.43389 -28.10952 -27.01291 -25.34077 -23.95210 -21.80126 -21.24703 -20.88201 -20.07351 -19.00369 -18.84024 -18.29840 -18.01461 -17.20352 -16.66391 -16.52238 -16.20380 -16.09865 -15.54974 -15.08361 -14.94465 -14.74240 -14.55132 -14.18595 -14.03036 -13.88328 -13.74365 -13.59538 -13.40332 -13.22790 -12.97335 -12.65009 -11.98126 -11.91993 -11.87577 -11.76955 -11.18849 -11.01456 -10.60345 -10.55723 -10.05058 -9.67858 -8.85940 -4.92567 1.19700 1.32359 1.69043 1.73932 1.96083 1.98735 2.30229 2.53974 2.86443 3.16978 3.27112 3.51590 3.56331 3.65000 3.69759 3.88268 3.89932 3.98325 4.06661 4.24561 4.31169 4.41457 4.44982 4.53398 4.62086 4.62793 4.66981 4.86188 4.88609 4.95171 5.04475 5.35502 5.39409 5.50810 6.09948 6.24119 6.50082 6.55641 6.59034 6.59103 6.70305 7.28879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.050 4.050 3 Si 0.719 3.281 4 C -0.011 4.011 5 C -0.187 4.187 6 C -0.173 4.173 7 C 0.038 3.962 8 C -0.073 4.073 9 C 0.516 3.484 10 O -0.521 6.521 11 N -0.711 5.711 12 C 0.159 3.841 13 C 0.083 3.917 14 O -0.567 6.567 15 C -0.117 4.117 16 C 0.076 3.924 17 H 0.087 0.913 18 O -0.556 6.556 19 C -0.164 4.164 20 N -0.536 5.536 21 H 0.382 0.618 22 H 0.108 0.892 23 H -0.255 1.255 24 H -0.256 1.256 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.403 0.597 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.383 0.617 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.381 0.619 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -2.179 4.241 4.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.160 4.160 3 Si 0.619 3.381 4 C -0.124 4.124 5 C -0.212 4.212 6 C -0.198 4.198 7 C -0.076 4.076 8 C -0.113 4.113 9 C 0.302 3.698 10 O -0.396 6.396 11 N -0.363 5.363 12 C 0.073 3.927 13 C 0.004 3.996 14 O -0.373 6.373 15 C -0.156 4.156 16 C 0.017 3.983 17 H 0.105 0.895 18 O -0.361 6.361 19 C -0.202 4.202 20 N -0.130 5.130 21 H 0.230 0.770 22 H 0.126 0.874 23 H -0.179 1.179 24 H -0.181 1.181 25 H 0.159 0.841 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.116 0.884 29 H 0.237 0.763 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.229 0.771 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.036 -1.394 2.253 2.845 hybrid contribution 0.148 -1.371 0.592 1.501 sum 1.185 -2.765 2.845 4.141 Atomic orbital electron populations 1.86468 1.17327 1.81885 1.49526 1.24825 0.85029 1.10681 0.95481 0.93990 0.80866 0.76653 0.86557 1.20833 1.07220 0.84396 0.99995 1.20638 1.05640 0.99450 0.95494 1.20571 1.06633 0.91694 1.00887 1.19475 1.03559 0.95860 0.88658 1.20138 0.99351 0.94325 0.97524 1.20542 0.85709 0.82211 0.81372 1.90737 1.44543 1.37331 1.66955 1.45767 1.37926 1.16483 1.36129 1.21300 0.87741 0.96085 0.87611 1.22245 0.84998 0.98593 0.93775 1.86426 1.33529 1.63486 1.53828 1.23337 0.93115 0.98905 1.00208 1.23247 0.87263 0.90398 0.97414 0.89545 1.86545 1.64099 1.42371 1.43090 1.23985 0.97163 0.95761 1.03295 1.41803 1.44278 1.09109 1.17827 0.76972 0.87417 1.17917 1.18080 0.84118 0.84652 0.86471 0.88443 0.76259 0.91703 0.92558 0.77002 0.89735 0.88448 0.77125 0.88389 0.89844 0.75165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.86 12.88 -35.23 -0.45 -1.31 16 2 C -0.05 -0.05 3.08 36.00 0.11 0.06 16 3 Si 0.72 -0.16 30.60 -169.99 -5.20 -5.36 16 4 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 5 C -0.19 -0.41 9.37 -39.78 -0.37 -0.78 16 6 C -0.17 -0.45 10.77 -39.78 -0.43 -0.88 16 7 C 0.04 0.07 5.66 -81.79 -0.46 -0.39 16 8 C -0.07 0.06 6.24 -29.03 -0.18 -0.12 16 9 C 0.52 0.69 7.48 -10.99 -0.08 0.61 16 10 O -0.52 -2.61 14.45 5.55 0.08 -2.53 16 11 N -0.71 0.32 5.12 -46.86 -0.24 0.08 16 12 C 0.16 -0.01 0.86 -131.01 -0.11 -0.12 16 13 C 0.08 -0.01 6.20 37.15 0.23 0.22 16 14 O -0.57 0.10 13.53 -35.23 -0.48 -0.38 16 15 C -0.12 -0.11 6.40 -25.92 -0.17 -0.28 16 16 C 0.08 -0.06 4.86 -25.92 -0.13 -0.18 16 17 H 0.09 -0.20 7.61 -51.93 -0.40 -0.59 16 18 O -0.56 -0.18 13.67 -35.23 -0.48 -0.66 16 19 C -0.16 0.21 7.22 -25.92 -0.19 0.03 16 20 N -0.54 -0.91 6.07 -5.44 -0.03 -0.94 16 21 H 0.38 -0.60 8.70 45.56 0.40 -0.21 16 22 H 0.11 0.10 7.96 -51.93 -0.41 -0.31 16 23 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 24 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 25 H 0.14 0.04 6.24 -52.49 -0.33 -0.29 16 26 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 27 H 0.12 -0.30 8.14 -51.93 -0.42 -0.72 16 28 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.40 -1.05 8.71 -40.82 -0.36 -1.41 16 30 H 0.06 0.10 7.21 -51.92 -0.37 -0.27 16 31 H 0.06 -0.10 7.32 -51.93 -0.38 -0.48 16 32 H 0.38 -1.46 9.12 45.56 0.42 -1.05 16 33 H 0.08 0.14 8.10 -51.93 -0.42 -0.28 16 34 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.38 -1.49 9.12 45.56 0.42 -1.07 16 36 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 38 H 0.41 0.07 8.96 -40.82 -0.37 -0.30 16 LS Contribution 322.94 15.07 4.87 4.87 Total: 0.00 -10.46 322.94 -7.79 -18.25 By element: Atomic # 1 Polarization: -6.08 SS G_CDS: -3.54 Total: -9.62 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.31 Total: -2.39 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -0.27 Total: -0.86 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -1.33 Total: -4.88 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: -5.20 Total: -5.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -10.46 -7.79 -18.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_14644196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.533 kcal (2) G-P(sol) polarization free energy of solvation -10.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds