Wall clock time and date at job start Sun Mar 7 2021 09:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.47331 * 2 1 4 4 C 1.50698 * 109.47198 * 239.99607 * 2 1 3 5 5 C 1.31112 * 118.54210 * 120.02302 * 4 2 1 6 6 N 1.38933 * 121.84570 * 180.38532 * 5 4 2 7 7 C 1.47030 * 118.88335 * 346.70443 * 6 5 4 8 8 C 1.53551 * 107.66447 * 43.65011 * 7 6 5 9 9 C 1.50206 * 118.54643 * 300.00198 * 4 2 1 10 10 C 1.50695 * 109.32975 * 39.86042 * 9 4 2 11 11 O 1.21288 * 120.00254 * 120.34384 * 10 9 4 12 12 N 1.34773 * 120.00008 * 300.34758 * 10 9 4 13 13 C 1.46504 * 119.99942 * 175.78994 * 12 10 9 14 14 C 1.53002 * 112.84675 * 294.08109 * 13 12 10 15 15 O 1.42907 * 109.46934 * 59.71592 * 14 13 12 16 16 C 1.53776 * 113.61915 * 65.28257 * 13 12 10 17 17 C 1.54052 * 86.98702 * 89.16189 * 16 13 12 18 18 H 1.08997 * 113.61751 * 139.97830 * 17 16 13 19 19 O 1.42898 * 113.68792 * 270.87359 * 17 16 13 20 20 C 1.53781 * 87.07706 * 25.43244 * 17 16 13 21 21 H 0.96699 * 113.99835 * 300.00055 * 1 2 3 22 22 H 1.09006 * 109.46635 * 120.00034 * 2 1 3 23 23 H 1.48498 * 109.99981 * 299.99895 * 3 2 1 24 24 H 1.48501 * 109.99809 * 61.31727 * 3 2 1 25 25 H 1.07999 * 119.08394 * 0.40467 * 5 4 2 26 26 H 0.97001 * 120.55552 * 166.72875 * 6 5 4 27 27 H 1.08992 * 109.82182 * 163.20445 * 7 6 5 28 28 H 1.08999 * 109.82479 * 284.13039 * 7 6 5 29 29 H 1.08999 * 109.61008 * 179.34305 * 8 7 6 30 30 H 1.08994 * 109.64212 * 58.77330 * 8 7 6 31 31 H 1.08998 * 109.32840 * 280.20353 * 9 4 2 32 32 H 0.96994 * 119.99902 * 355.77758 * 12 10 9 33 33 H 1.08996 * 109.47231 * 179.71600 * 14 13 12 34 34 H 1.09001 * 109.47463 * 299.71928 * 14 13 12 35 35 H 0.96697 * 114.00167 * 180.02562 * 15 14 13 36 36 H 1.09006 * 113.61220 * 203.67116 * 16 13 12 37 37 H 1.09002 * 113.61247 * 334.56307 * 16 13 12 38 38 H 0.96694 * 113.99885 * 277.52984 * 19 17 16 39 39 H 1.08998 * 113.61435 * 220.02256 * 20 17 16 40 40 H 1.08996 * 113.69253 * 89.12926 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.6836 -0.0462 -2.0742 6 7 3.1772 -0.6311 -3.2337 7 6 3.1018 -2.0922 -3.3798 8 6 1.7100 -2.5364 -2.9072 9 6 1.5487 -2.1484 -1.4355 10 6 0.1119 -2.3454 -1.0259 11 8 -0.6993 -2.7471 -1.8332 12 7 -0.2718 -2.0752 0.2375 13 6 -1.6844 -2.1781 0.6119 14 6 -2.5624 -1.1408 -0.0911 15 8 -2.4670 -1.3167 -1.5062 16 6 -2.2398 -3.6099 0.5338 17 6 -1.7850 -3.7791 1.9959 18 1 -2.4927 -4.3338 2.6120 19 8 -0.4434 -4.2530 2.1286 20 6 -1.9153 -2.2528 2.1305 21 1 -0.3933 0.4417 0.7650 22 1 1.7923 -0.5139 0.8901 23 1 1.5617 2.4678 -1.2085 24 1 1.5880 2.4585 1.2242 25 1 2.9265 0.9845 -1.8619 26 1 3.5654 -0.0847 -3.9349 27 1 3.2424 -2.3668 -4.4251 28 1 3.8685 -2.5651 -2.7661 29 1 1.6153 -3.6171 -3.0132 30 1 0.9447 -2.0389 -3.5029 31 1 2.1888 -2.7831 -0.8228 32 1 0.3874 -1.8129 0.8989 33 1 -3.5984 -1.2696 0.2220 34 1 -2.2244 -0.1390 0.1740 35 1 -2.9989 -0.6912 -2.0169 36 1 -3.3215 -3.6522 0.4053 37 1 -1.7039 -4.2484 -0.1685 38 1 -0.3550 -5.2122 2.0448 39 1 -1.1176 -1.7964 2.7165 40 1 -2.9078 -1.9234 2.4379 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_15608500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:05 Heat of formation + Delta-G solvation = -75.454413 kcal Electronic energy + Delta-G solvation = -25602.396952 eV Core-core repulsion = 22000.594558 eV Total energy + Delta-G solvation = -3601.802394 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79812 -40.34100 -38.51596 -37.78997 -37.22678 -35.70475 -33.75231 -32.85789 -32.76892 -28.53480 -27.18730 -26.83464 -25.72181 -23.39329 -22.91072 -21.60076 -20.17849 -19.22191 -18.64950 -18.31997 -18.12213 -18.05582 -17.47344 -16.87925 -16.57429 -16.09537 -15.58904 -15.33169 -15.23645 -14.81977 -14.71489 -14.61135 -14.35143 -13.82737 -13.63014 -13.48322 -13.25462 -13.16158 -12.97736 -12.92546 -12.28776 -12.16515 -12.06385 -11.81130 -11.66692 -11.44281 -11.19848 -10.80878 -10.63151 -10.41704 -10.19015 -9.17975 -8.35026 -4.85922 1.29171 1.48513 1.62995 2.00622 2.21799 2.50379 2.70292 3.13203 3.20197 3.59770 3.70724 3.77409 3.81383 3.90127 3.94644 4.11435 4.26980 4.31635 4.34243 4.46796 4.54209 4.57480 4.64952 4.69631 4.72117 4.74422 4.82244 4.83692 4.90815 5.03580 5.10294 5.19762 5.27891 5.34782 5.52542 6.01243 6.37141 6.68974 6.81875 6.95085 6.99515 7.04361 7.82179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.062 4.062 3 Si 0.737 3.263 4 C -0.245 4.245 5 C 0.149 3.851 6 N -0.747 5.747 7 C 0.124 3.876 8 C -0.114 4.114 9 C -0.041 4.041 10 C 0.530 3.470 11 O -0.560 6.560 12 N -0.653 5.653 13 C 0.162 3.838 14 C 0.081 3.919 15 O -0.556 6.556 16 C -0.172 4.172 17 C 0.083 3.917 18 H 0.086 0.914 19 O -0.561 6.561 20 C -0.118 4.118 21 H 0.369 0.631 22 H 0.086 0.914 23 H -0.313 1.313 24 H -0.296 1.296 25 H 0.144 0.856 26 H 0.412 0.588 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.366 0.634 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.393 0.607 39 H 0.091 0.909 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 1.096 4.496 5.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.172 4.172 3 Si 0.646 3.354 4 C -0.255 4.255 5 C 0.027 3.973 6 N -0.378 5.378 7 C 0.000 4.000 8 C -0.153 4.153 9 C -0.062 4.062 10 C 0.316 3.684 11 O -0.438 6.438 12 N -0.306 5.306 13 C 0.074 3.926 14 C 0.003 3.997 15 O -0.360 6.360 16 C -0.211 4.211 17 C 0.023 3.977 18 H 0.103 0.897 19 O -0.369 6.369 20 C -0.155 4.155 21 H 0.219 0.781 22 H 0.104 0.896 23 H -0.242 1.242 24 H -0.224 1.224 25 H 0.161 0.839 26 H 0.248 0.752 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.241 0.759 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.212 0.788 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.243 0.757 39 H 0.110 0.890 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.670 1.336 3.654 5.348 hybrid contribution -1.589 0.208 -0.004 1.603 sum 2.081 1.544 3.649 4.475 Atomic orbital electron populations 1.87238 1.18261 1.77721 1.50432 1.24591 0.84513 1.09498 0.98594 0.94800 0.91706 0.73629 0.75293 1.19657 1.08546 0.95713 1.01634 1.20490 0.93453 0.96585 0.86811 1.44595 1.67488 1.06940 1.18814 1.21670 0.95315 0.80596 1.02467 1.21605 0.97851 1.01103 0.94784 1.19711 0.93393 0.95476 0.97621 1.20346 0.89980 0.76016 0.82029 1.90688 1.54705 1.46510 1.51933 1.45279 1.06722 1.67943 1.10674 1.21122 0.82860 0.94078 0.94568 1.22528 0.97288 0.97837 0.82093 1.86996 1.71915 1.59729 1.17349 1.23960 1.01122 0.97916 0.98061 1.22776 0.84279 0.96155 0.94445 0.89667 1.86371 1.26576 1.28982 1.94922 1.23349 1.04948 0.94546 0.92689 0.78093 0.89605 1.24192 1.22422 0.83940 0.75199 0.88697 0.90716 0.91079 0.93674 0.88305 0.75889 0.93078 0.92911 0.78835 0.89165 0.93441 0.75743 0.89000 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.68 6.13 -148.98 -0.91 -1.59 16 2 C -0.06 0.08 1.83 71.24 0.13 0.21 16 3 Si 0.74 -1.17 29.68 68.60 2.04 0.87 16 4 C -0.24 -0.55 5.29 -16.76 -0.09 -0.64 16 5 C 0.15 0.06 9.63 83.42 0.80 0.86 16 6 N -0.75 0.97 5.83 -345.88 -2.02 -1.05 16 7 C 0.12 -0.14 7.16 86.46 0.62 0.48 16 8 C -0.11 -0.66 4.90 30.80 0.15 -0.51 16 9 C -0.04 -0.21 2.74 -12.43 -0.03 -0.25 16 10 C 0.53 5.43 5.62 87.66 0.49 5.92 16 11 O -0.56 -10.66 11.93 19.99 0.24 -10.42 16 12 N -0.65 -2.55 2.18 -420.53 -0.92 -3.47 16 13 C 0.16 0.45 0.80 4.13 0.00 0.45 16 14 C 0.08 0.30 5.82 71.98 0.42 0.72 16 15 O -0.56 -6.40 10.25 -125.93 -1.29 -7.69 16 16 C -0.17 -0.85 6.79 31.21 0.21 -0.64 16 17 C 0.08 -0.07 5.28 31.21 0.16 0.09 16 18 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 19 O -0.56 -0.19 13.10 -148.98 -1.95 -2.14 16 20 C -0.12 0.41 7.20 31.12 0.22 0.63 16 21 H 0.37 -1.75 7.95 -74.06 -0.59 -2.34 16 22 H 0.09 -0.50 7.10 -2.38 -0.02 -0.52 16 23 H -0.31 -2.24 7.11 99.48 0.71 -1.53 16 24 H -0.30 -0.97 7.11 99.48 0.71 -0.26 16 25 H 0.14 -0.43 4.37 -2.91 -0.01 -0.44 16 26 H 0.41 -2.17 8.96 -92.71 -0.83 -3.00 16 27 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 0.58 7.75 -2.39 -0.02 0.56 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.40 0.21 6.03 -92.71 -0.56 -0.35 16 33 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.05 0.06 6.18 -2.39 -0.01 0.05 16 35 H 0.37 2.03 9.12 -74.06 -0.68 1.36 16 36 H 0.09 0.38 8.10 -2.38 -0.02 0.36 16 37 H 0.05 0.58 7.22 -2.39 -0.02 0.57 16 38 H 0.39 -2.13 9.12 -74.06 -0.68 -2.80 16 39 H 0.09 -0.44 8.09 -2.39 -0.02 -0.46 16 40 H 0.13 -0.96 8.10 -2.39 -0.02 -0.98 16 Total: 0.00 -24.45 303.30 -3.89 -28.33 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: -2.17 Total: -10.17 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 3.10 Total: 7.33 kcal Atomic # 7 Polarization: -1.58 SS G_CDS: -2.93 Total: -4.51 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -3.92 Total: -21.84 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.04 Total: 0.87 kcal Total: -24.45 -3.89 -28.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_15608500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.123 kcal (2) G-P(sol) polarization free energy of solvation -24.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds