Wall clock time and date at job start Sun Mar 7 2021 09:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47112 * 2 1 4 4 C 1.50705 * 109.47411 * 240.00212 * 2 1 3 5 5 C 1.38273 * 119.94010 * 300.00107 * 4 2 1 6 6 C 1.38143 * 120.05113 * 179.97438 * 5 4 2 7 7 C 1.38726 * 119.94835 * 359.97438 * 6 5 4 8 8 O 1.35905 * 120.05805 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99978 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.46914 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47070 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99902 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00065 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00160 * 175.01917 * 13 11 10 15 15 C 1.53007 * 112.84811 * 293.62602 * 14 13 11 16 16 O 1.42901 * 109.46821 * 305.09320 * 15 14 13 17 17 C 1.53780 * 113.61528 * 64.82011 * 14 13 11 18 18 C 1.53780 * 87.08142 * 139.98504 * 17 14 13 19 19 H 1.09000 * 113.61726 * 89.20159 * 18 17 14 20 20 O 1.42900 * 113.61527 * 220.02285 * 18 17 14 21 21 C 1.53777 * 113.61620 * 162.31852 * 14 13 11 22 22 C 1.38732 * 119.88768 * 0.27555 * 7 6 5 23 23 C 1.38149 * 119.94485 * 359.46924 * 22 7 6 24 24 H 0.96702 * 113.99770 * 60.00107 * 1 2 3 25 25 H 1.08996 * 109.47137 * 120.00069 * 2 1 3 26 26 H 1.48501 * 109.99866 * 60.00144 * 3 2 1 27 27 H 1.48503 * 110.00030 * 181.32038 * 3 2 1 28 28 H 1.08000 * 119.97195 * 0.02562 * 5 4 2 29 29 H 1.08000 * 120.02529 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47273 * 300.00432 * 9 8 7 31 31 H 1.09002 * 109.46762 * 60.00409 * 9 8 7 32 32 H 1.09007 * 109.47352 * 300.00174 * 10 9 8 33 33 H 1.08998 * 109.47479 * 60.00063 * 10 9 8 34 34 H 0.97001 * 120.00056 * 355.01241 * 13 11 10 35 35 H 1.09002 * 109.46881 * 65.09506 * 15 14 13 36 36 H 1.08992 * 109.46801 * 185.09052 * 15 14 13 37 37 H 0.96700 * 113.99502 * 180.02562 * 16 15 14 38 38 H 1.08994 * 113.61876 * 254.52989 * 17 14 13 39 39 H 1.08998 * 113.61732 * 25.35256 * 17 14 13 40 40 H 0.96699 * 114.00476 * 179.97438 * 20 18 17 41 41 H 1.09000 * 113.61762 * 334.56928 * 21 14 13 42 42 H 1.09007 * 113.61203 * 105.47211 * 21 14 13 43 43 H 1.08001 * 120.03173 * 179.71798 * 22 7 6 44 44 H 1.07991 * 119.97657 * 180.22784 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5966 -2.0342 -1.4482 6 6 2.0555 -2.6874 -2.5756 7 6 2.8523 -2.0141 -3.4900 8 8 3.3045 -2.6544 -4.6002 9 6 4.1196 -1.8987 -5.4982 10 6 4.5294 -2.7803 -6.6796 11 6 5.3896 -1.9835 -7.6264 12 8 5.6489 -0.8246 -7.3806 13 7 5.8699 -2.5586 -8.7467 14 6 6.6139 -1.7563 -9.7208 15 6 5.7466 -0.6976 -10.4048 16 8 4.6071 -1.3250 -10.9965 17 6 7.9439 -1.2068 -9.1787 18 6 8.5476 -1.5283 -10.5561 19 1 8.4603 -0.7115 -11.2726 20 8 9.8684 -2.0696 -10.4900 21 6 7.4507 -2.5964 -10.7000 22 6 3.1910 -0.6874 -3.2667 23 6 2.7253 -0.0370 -2.1404 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8899 26 1 1.5615 2.4678 1.2085 27 1 3.5346 1.7703 -0.0322 28 1 0.9753 -2.5576 -0.7366 29 1 1.7941 -3.7215 -2.7450 30 1 3.5572 -1.0397 -5.8642 31 1 5.0117 -1.5530 -4.9757 32 1 5.0918 -3.6395 -6.3140 33 1 3.6373 -3.1256 -7.2020 34 1 5.7230 -3.5038 -8.9079 35 1 5.4165 0.0337 -9.6669 36 1 6.3279 -0.1961 -11.1784 37 1 4.0116 -0.7122 -11.4492 38 1 7.9162 -0.1410 -8.9523 39 1 8.3636 -1.8011 -8.3671 40 1 10.2534 -2.2742 -11.3531 41 1 7.7362 -3.5715 -10.3053 42 1 7.0245 -2.6524 -11.7018 43 1 3.8150 -0.1623 -3.9748 44 1 2.9857 0.9968 -1.9679 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341542_4549602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:17 Heat of formation + Delta-G solvation = -143.692122 kcal Electronic energy + Delta-G solvation = -27004.377080 eV Core-core repulsion = 22889.907115 eV Total energy + Delta-G solvation = -4114.469965 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83784 -41.21376 -39.86386 -39.03289 -37.63068 -37.12871 -36.22433 -34.21626 -33.14074 -31.96694 -31.33941 -28.34075 -27.07880 -26.61626 -25.69490 -24.12881 -23.21648 -22.14269 -21.34129 -20.13096 -19.49162 -19.02904 -18.33855 -18.24994 -17.76580 -17.45559 -17.18693 -16.83653 -16.48535 -16.33707 -15.99625 -15.90590 -15.63673 -15.41075 -14.93336 -14.73040 -14.65677 -14.42599 -14.17698 -14.05722 -13.78894 -13.59820 -13.47904 -13.27866 -13.04682 -12.83448 -12.78006 -12.07040 -11.99539 -11.97336 -11.82628 -11.77111 -11.62246 -11.28393 -11.05814 -10.71832 -10.38124 -10.16029 -9.98096 -9.13277 -5.00792 0.35250 0.37545 1.34096 1.53088 1.65884 1.68792 2.00190 2.42263 2.73045 2.80303 3.12484 3.22355 3.50711 3.52008 3.53792 3.60577 3.73524 3.83398 3.83655 3.86542 3.92201 4.00376 4.15658 4.24524 4.29278 4.34766 4.43192 4.46894 4.55283 4.58105 4.60348 4.62058 4.64923 4.77857 4.83601 4.90099 4.99187 5.01221 5.23890 5.34750 5.40930 5.55331 5.77085 6.36292 6.41621 6.49896 6.56215 6.62029 7.11952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.062 4.062 3 Si 0.685 3.315 4 C -0.159 4.159 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.138 3.862 8 O -0.316 6.316 9 C 0.075 3.925 10 C -0.142 4.142 11 C 0.525 3.475 12 O -0.537 6.537 13 N -0.706 5.706 14 C 0.157 3.843 15 C 0.083 3.917 16 O -0.567 6.567 17 C -0.118 4.118 18 C 0.077 3.923 19 H 0.087 0.913 20 O -0.555 6.555 21 C -0.164 4.164 22 C -0.203 4.203 23 C -0.076 4.076 24 H 0.379 0.621 25 H 0.112 0.888 26 H -0.255 1.255 27 H -0.259 1.259 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.383 0.617 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.381 0.619 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -0.030 -6.290 6.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.173 4.173 3 Si 0.588 3.412 4 C -0.160 4.160 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.092 3.908 8 O -0.230 6.230 9 C 0.000 4.000 10 C -0.182 4.182 11 C 0.312 3.688 12 O -0.414 6.414 13 N -0.357 5.357 14 C 0.071 3.929 15 C 0.004 3.996 16 O -0.373 6.373 17 C -0.156 4.156 18 C 0.017 3.983 19 H 0.105 0.895 20 O -0.361 6.361 21 C -0.202 4.202 22 C -0.221 4.221 23 C -0.094 4.094 24 H 0.226 0.774 25 H 0.130 0.870 26 H -0.180 1.180 27 H -0.184 1.184 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.241 0.759 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.231 0.769 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.229 0.771 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.790 0.444 -4.318 4.412 hybrid contribution -0.037 -0.507 -0.900 1.033 sum 0.753 -0.062 -5.218 5.272 Atomic orbital electron populations 1.86492 1.17235 1.81696 1.49267 1.24954 0.85122 1.09828 0.97424 0.94758 0.81001 0.78327 0.87136 1.20234 1.02026 0.95633 0.98064 1.20826 0.96947 0.93434 0.95927 1.20507 1.00942 1.01053 0.94445 1.18992 0.94014 0.91025 0.86730 1.85982 1.65138 1.40466 1.31423 1.22417 0.94679 0.93826 0.89110 1.21470 1.01388 0.99919 0.95398 1.20253 0.79544 0.87536 0.81515 1.90721 1.58592 1.17415 1.74697 1.45715 1.56642 1.13055 1.20311 1.21356 0.89398 0.92749 0.89437 1.22247 0.87442 0.93793 0.96155 1.86434 1.36913 1.38885 1.75052 1.23352 0.92253 1.03109 0.96931 1.23239 0.81684 0.95052 0.98310 0.89502 1.86546 1.29657 1.85040 1.34831 1.23993 0.96294 0.99721 1.00177 1.21268 1.05697 0.94462 1.00704 1.20803 0.96231 0.99042 0.93306 0.77397 0.87024 1.18008 1.18373 0.84893 0.84877 0.90870 0.90927 0.87595 0.87371 0.75941 0.91759 0.92403 0.76945 0.89668 0.88267 0.77076 0.88270 0.89779 0.84810 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.43 12.77 -35.23 -0.45 -0.88 16 2 C -0.06 -0.03 2.82 36.01 0.10 0.07 16 3 Si 0.69 -0.21 29.78 -169.99 -5.06 -5.27 16 4 C -0.16 -0.16 5.39 -104.60 -0.56 -0.73 16 5 C -0.05 -0.07 9.60 -39.60 -0.38 -0.45 16 6 C -0.15 -0.25 9.99 -39.44 -0.39 -0.65 16 7 C 0.14 0.30 6.69 -39.22 -0.26 0.03 16 8 O -0.32 -0.59 10.14 -19.44 -0.20 -0.79 16 9 C 0.08 0.03 4.03 37.16 0.15 0.18 16 10 C -0.14 0.19 6.07 -27.89 -0.17 0.02 16 11 C 0.53 0.31 7.49 -10.99 -0.08 0.23 16 12 O -0.54 -1.95 14.40 5.56 0.08 -1.87 16 13 N -0.71 0.60 5.12 -46.86 -0.24 0.36 16 14 C 0.16 -0.09 0.86 -131.01 -0.11 -0.20 16 15 C 0.08 -0.06 6.20 37.16 0.23 0.17 16 16 O -0.57 0.34 13.53 -35.23 -0.48 -0.13 16 17 C -0.12 -0.04 6.40 -25.92 -0.17 -0.21 16 18 C 0.08 -0.09 4.86 -25.92 -0.13 -0.22 16 19 H 0.09 -0.24 7.61 -51.93 -0.40 -0.63 16 20 O -0.56 0.03 13.67 -35.23 -0.48 -0.45 16 21 C -0.16 0.28 7.22 -25.92 -0.19 0.09 16 22 C -0.20 -0.28 9.04 -39.43 -0.36 -0.64 16 23 C -0.08 -0.06 8.66 -39.60 -0.34 -0.40 16 24 H 0.38 -1.13 8.70 45.56 0.40 -0.74 16 25 H 0.11 0.10 7.96 -51.93 -0.41 -0.32 16 26 H -0.26 -0.73 7.11 56.52 0.40 -0.33 16 27 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 28 H 0.13 0.06 8.06 -52.49 -0.42 -0.37 16 29 H 0.13 0.07 8.06 -52.49 -0.42 -0.36 16 30 H 0.07 0.04 7.63 -51.93 -0.40 -0.36 16 31 H 0.07 0.06 7.61 -51.93 -0.40 -0.34 16 32 H 0.11 -0.28 8.14 -51.92 -0.42 -0.70 16 33 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 34 H 0.41 -1.16 8.71 -40.82 -0.36 -1.51 16 35 H 0.06 0.05 7.21 -51.93 -0.37 -0.33 16 36 H 0.06 -0.14 7.32 -51.93 -0.38 -0.52 16 37 H 0.38 -1.63 9.12 45.56 0.42 -1.22 16 38 H 0.08 0.07 8.10 -51.93 -0.42 -0.35 16 39 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.38 -1.62 9.12 45.56 0.42 -1.20 16 41 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 42 H 0.08 -0.17 8.10 -51.93 -0.42 -0.59 16 43 H 0.13 0.04 6.30 -52.49 -0.33 -0.29 16 44 H 0.13 -0.13 4.87 -52.49 -0.26 -0.38 16 LS Contribution 365.97 15.07 5.52 5.52 Total: 0.00 -9.79 365.97 -8.62 -18.41 By element: Atomic # 1 Polarization: -7.55 SS G_CDS: -4.64 Total: -12.19 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.66 Total: -2.70 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -0.24 Total: 0.36 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: -1.53 Total: -4.12 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.06 Total: -5.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -9.79 -8.62 -18.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_4549602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.284 kcal (2) G-P(sol) polarization free energy of solvation -9.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds