Wall clock time and date at job start Sun Mar 7 2021 09:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47001 * 2 1 4 4 C 1.50701 * 109.47194 * 240.00433 * 2 1 3 5 5 C 1.38243 * 119.94657 * 120.00129 * 4 2 1 6 6 C 1.38163 * 120.05656 * 179.97438 * 5 4 2 7 7 C 1.38711 * 119.94462 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05838 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99655 * 359.97414 * 8 7 6 10 10 C 1.50705 * 109.47109 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99862 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99890 * 174.63442 * 12 10 9 14 14 C 1.53004 * 112.84866 * 75.46342 * 13 12 10 15 15 O 1.42902 * 109.46749 * 55.35818 * 14 13 12 16 16 C 1.53777 * 113.61425 * 206.77472 * 13 12 10 17 17 C 1.53784 * 87.08230 * 89.11754 * 16 13 12 18 18 H 1.08998 * 113.61337 * 139.98070 * 17 16 13 19 19 O 1.42894 * 113.68747 * 270.87296 * 17 16 13 20 20 C 1.53778 * 87.08145 * 25.43386 * 17 16 13 21 21 C 1.38758 * 119.88773 * 359.97438 * 7 6 5 22 22 N 1.48000 * 120.02447 * 179.97438 * 21 7 6 23 23 O 1.21803 * 119.99582 * 180.02562 * 22 21 7 24 24 O 1.21802 * 120.00492 * 359.72702 * 22 21 7 25 25 C 1.38119 * 119.94120 * 0.25548 * 21 7 6 26 26 H 0.96698 * 113.99862 * 59.99894 * 1 2 3 27 27 H 1.09003 * 109.46763 * 120.00013 * 2 1 3 28 28 H 1.48507 * 109.99834 * 60.00105 * 3 2 1 29 29 H 1.48500 * 109.99753 * 181.31374 * 3 2 1 30 30 H 1.07998 * 119.97157 * 359.97428 * 5 4 2 31 31 H 1.08004 * 120.03003 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47265 * 300.00039 * 9 8 7 33 33 H 1.08999 * 109.47583 * 60.00417 * 9 8 7 34 34 H 0.96994 * 119.99912 * 354.63770 * 12 10 9 35 35 H 1.08998 * 109.46652 * 175.35303 * 14 13 12 36 36 H 1.08993 * 109.47477 * 295.35725 * 14 13 12 37 37 H 0.96703 * 113.99747 * 179.97438 * 15 14 13 38 38 H 1.09003 * 113.61480 * 203.66675 * 16 13 12 39 39 H 1.09002 * 113.61668 * 334.56463 * 16 13 12 40 40 H 0.96705 * 113.99621 * 277.53370 * 19 17 16 41 41 H 1.09001 * 113.61400 * 220.02266 * 20 17 16 42 42 H 1.08999 * 113.69593 * 89.12630 * 20 17 16 43 43 H 1.08007 * 119.97032 * 179.74260 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7261 -0.0373 -2.1397 6 6 3.1884 -0.6865 -3.2683 7 6 2.8539 -2.0145 -3.4891 8 8 3.3078 -2.6554 -4.5982 9 6 4.1247 -1.9003 -5.4951 10 6 4.5311 -2.7696 -6.6572 11 8 4.1575 -3.9221 -6.7121 12 7 5.3088 -2.2659 -7.6359 13 6 5.8009 -3.1401 -8.7035 14 6 4.7210 -3.4910 -9.7291 15 8 4.1582 -2.2888 -10.2583 16 6 7.1192 -2.6610 -9.3336 17 6 7.8427 -3.4832 -8.2540 18 1 8.7228 -4.0098 -8.6230 19 8 8.0956 -2.7548 -7.0510 20 6 6.5818 -4.3611 -8.1891 21 6 2.0561 -2.6877 -2.5750 22 7 1.6970 -4.1045 -2.8078 23 8 0.9962 -4.6949 -2.0053 24 8 2.0976 -4.6786 -3.8046 25 6 1.5927 -2.0329 -1.4507 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5614 2.4679 1.2086 29 1 3.5346 1.7702 -0.0320 30 1 2.9859 0.9967 -1.9676 31 1 3.8089 -0.1602 -3.9786 32 1 3.5630 -1.0413 -5.8624 33 1 5.0159 -1.5546 -4.9714 34 1 5.5428 -1.3246 -7.6334 35 1 5.1636 -4.0718 -10.5383 36 1 3.9386 -4.0769 -9.2470 37 1 3.4653 -2.4355 -10.9167 38 1 7.2797 -3.0322 -10.3458 39 1 7.2803 -1.5865 -9.2453 40 1 8.8875 -2.2008 -7.0857 41 1 6.3089 -4.6591 -7.1768 42 1 6.5940 -5.1976 -8.8878 43 1 0.9682 -2.5553 -0.7410 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_4549638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:41 Heat of formation + Delta-G solvation = -133.963931 kcal Electronic energy + Delta-G solvation = -32360.929533 eV Core-core repulsion = 27571.402597 eV Total energy + Delta-G solvation = -4789.526935 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.31412 -41.98574 -41.47644 -39.98663 -39.03734 -37.60973 -37.54526 -37.35887 -35.89477 -34.09947 -33.46203 -32.24587 -29.99819 -28.41854 -27.84006 -26.95107 -26.56079 -24.33152 -23.38858 -22.80931 -21.84507 -20.62842 -20.29652 -19.79459 -19.16253 -18.66172 -18.65518 -18.29026 -18.16528 -18.00547 -17.56126 -17.10068 -16.94655 -16.42225 -16.32349 -16.12024 -15.76682 -15.65044 -15.41290 -14.95703 -14.91541 -14.71564 -14.05940 -13.91495 -13.77754 -13.70175 -13.40482 -13.25369 -13.12137 -12.72528 -12.72390 -12.39025 -12.29412 -12.26680 -12.20625 -12.11439 -11.95461 -11.47961 -11.14504 -10.94326 -10.85853 -10.68117 -10.57430 -9.99885 -9.80468 -5.00018 -1.33136 -0.26278 0.13862 0.33367 1.19337 1.26643 1.50627 1.63766 2.00802 2.03784 2.30690 3.01158 3.09755 3.13492 3.23409 3.37125 3.48615 3.52261 3.57993 3.64967 3.69331 3.77817 3.80303 3.89323 3.99393 4.19037 4.27330 4.34611 4.41832 4.43503 4.49526 4.61476 4.62229 4.67188 4.81618 4.83919 4.89002 5.00706 5.05443 5.06252 5.17485 5.55097 5.74066 6.40463 6.48671 6.72794 6.77445 6.90882 7.19208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.081 4.081 3 Si 0.798 3.202 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.190 4.190 7 C 0.192 3.808 8 O -0.290 6.290 9 C 0.028 3.972 10 C 0.512 3.488 11 O -0.560 6.560 12 N -0.674 5.674 13 C 0.153 3.847 14 C 0.075 3.925 15 O -0.578 6.578 16 C -0.144 4.144 17 C 0.085 3.915 18 H 0.090 0.910 19 O -0.565 6.565 20 C -0.144 4.144 21 C -0.104 4.104 22 N 0.035 4.965 23 O -0.200 6.200 24 O -0.177 6.177 25 C -0.002 4.002 26 H 0.398 0.602 27 H 0.110 0.890 28 H -0.304 1.304 29 H -0.264 1.264 30 H 0.189 0.811 31 H 0.202 0.798 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.418 0.582 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.394 0.606 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.398 0.602 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 13.545 -5.974 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.189 4.189 3 Si 0.702 3.298 4 C -0.151 4.151 5 C -0.021 4.021 6 C -0.209 4.209 7 C 0.142 3.858 8 O -0.200 6.200 9 C -0.049 4.049 10 C 0.297 3.703 11 O -0.438 6.438 12 N -0.327 5.327 13 C 0.066 3.934 14 C -0.004 4.004 15 O -0.386 6.386 16 C -0.182 4.182 17 C 0.026 3.974 18 H 0.108 0.892 19 O -0.373 6.373 20 C -0.183 4.183 21 C -0.189 4.189 22 N 0.545 4.455 23 O -0.408 6.408 24 O -0.390 6.390 25 C -0.022 4.022 26 H 0.248 0.752 27 H 0.128 0.872 28 H -0.232 1.232 29 H -0.191 1.191 30 H 0.206 0.794 31 H 0.219 0.781 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.244 0.756 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.249 0.751 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.053 13.373 -4.417 15.751 hybrid contribution -0.298 -1.458 -0.168 1.498 sum 6.756 11.915 -4.585 14.444 Atomic orbital electron populations 1.86527 1.17187 1.82216 1.50621 1.25475 0.85503 1.12042 0.95928 0.93789 0.77969 0.72618 0.85438 1.20468 1.02033 0.92721 0.99901 1.21711 0.89470 1.01168 0.89776 1.21788 1.06086 0.90565 1.02415 1.19005 0.89703 0.92120 0.85001 1.86467 1.63488 1.39684 1.30338 1.23040 0.97706 0.94607 0.89554 1.20359 0.78393 0.87828 0.83699 1.90805 1.54698 1.20064 1.78212 1.45015 1.50664 1.13140 1.23891 1.21339 0.92658 0.92533 0.86912 1.22458 0.95476 0.86943 0.95505 1.86370 1.58434 1.31392 1.62413 1.23875 0.91924 1.02442 0.99938 1.22678 0.96697 0.92840 0.85202 0.89222 1.86449 1.51239 1.63704 1.35910 1.23456 0.95147 0.97191 1.02469 1.20857 1.13379 0.81528 1.03182 1.43885 0.98207 1.03961 0.99457 1.94495 1.35803 1.68269 1.42217 1.94684 1.56693 1.69441 1.18132 1.20847 0.94157 0.94759 0.92387 0.75181 0.87221 1.23236 1.19055 0.79431 0.78090 0.84215 0.84648 0.74444 0.90665 0.95394 0.75624 0.86375 0.88790 0.75114 0.92733 0.86652 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.66 12.76 -148.98 -1.90 -0.24 16 2 C -0.08 0.44 2.82 71.24 0.20 0.64 16 3 Si 0.80 -7.61 29.78 68.60 2.04 -5.57 16 4 C -0.15 0.69 5.39 -19.85 -0.11 0.58 16 5 C 0.00 0.04 8.66 22.25 0.19 0.23 16 6 C -0.19 1.64 9.04 22.36 0.20 1.84 16 7 C 0.19 0.53 6.67 22.51 0.15 0.68 16 8 O -0.29 -2.11 7.68 -63.38 -0.49 -2.59 16 9 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 10 C 0.51 2.56 7.41 87.66 0.65 3.21 16 11 O -0.56 -9.40 14.42 16.00 0.23 -9.17 16 12 N -0.67 0.85 4.50 -420.52 -1.89 -1.04 16 13 C 0.15 -0.05 0.76 4.13 0.00 -0.05 16 14 C 0.08 0.06 6.42 71.98 0.46 0.52 16 15 O -0.58 0.32 13.54 -148.98 -2.02 -1.70 16 16 C -0.14 0.94 7.23 31.12 0.23 1.16 16 17 C 0.09 -0.35 5.27 31.12 0.16 -0.19 16 18 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 19 O -0.56 2.03 13.09 -148.98 -1.95 0.08 16 20 C -0.14 -0.29 6.71 31.12 0.21 -0.08 16 21 C -0.10 -0.89 6.87 36.48 0.25 -0.64 16 22 N 0.03 0.63 4.45 -46.25 -0.21 0.43 16 23 O -0.20 -3.94 18.45 18.88 0.35 -3.60 16 24 O -0.18 -4.12 17.24 25.60 0.44 -3.68 16 25 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 26 H 0.40 -4.63 8.70 -74.06 -0.64 -5.28 16 27 H 0.11 -0.39 7.96 -2.39 -0.02 -0.41 16 28 H -0.30 -0.01 7.11 99.48 0.71 0.70 16 29 H -0.26 1.95 7.11 99.48 0.71 2.66 16 30 H 0.19 -3.40 4.87 -2.91 -0.01 -3.41 16 31 H 0.20 -3.60 6.30 -2.91 -0.02 -3.62 16 32 H 0.14 -1.65 7.66 -2.39 -0.02 -1.67 16 33 H 0.14 -1.42 7.66 -2.39 -0.02 -1.44 16 34 H 0.42 -3.24 8.75 -92.71 -0.81 -4.05 16 35 H 0.08 -0.26 8.09 -2.39 -0.02 -0.28 16 36 H 0.03 0.20 7.51 -2.39 -0.02 0.18 16 37 H 0.39 -2.86 9.12 -74.06 -0.68 -3.53 16 38 H 0.12 -1.05 8.06 -2.39 -0.02 -1.07 16 39 H 0.09 -0.80 8.13 -2.39 -0.02 -0.82 16 40 H 0.40 -4.94 9.12 -74.05 -0.68 -5.61 16 41 H 0.05 0.57 6.72 -2.39 -0.02 0.56 16 42 H 0.12 -0.11 8.10 -2.39 -0.02 -0.13 16 43 H 0.15 0.73 7.61 -2.91 -0.02 0.71 16 Total: 0.00 -42.04 370.24 -3.85 -45.88 By element: Atomic # 1 Polarization: -25.55 SS G_CDS: -1.63 Total: -27.18 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 3.18 Total: 8.38 kcal Atomic # 7 Polarization: 1.48 SS G_CDS: -2.10 Total: -0.62 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -5.34 Total: -20.89 kcal Atomic # 14 Polarization: -7.61 SS G_CDS: 2.04 Total: -5.57 kcal Total: -42.04 -3.85 -45.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_4549638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.079 kcal (2) G-P(sol) polarization free energy of solvation -42.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds