Wall clock time and date at job start Sun Mar 7 2021 09:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99855 * 2 1 4 4 H 1.09003 * 112.90783 * 18.74357 * 3 2 1 5 5 C 1.53783 * 113.61549 * 150.00095 * 3 2 1 6 6 C 1.53774 * 87.08235 * 89.11172 * 5 3 2 7 7 C 1.53006 * 113.61475 * 140.06037 * 6 5 3 8 8 O 1.42895 * 109.47302 * 186.58907 * 7 6 5 9 9 N 1.46496 * 113.61921 * 270.88393 * 6 5 3 10 10 C 1.34777 * 119.99615 * 303.12190 * 9 6 5 11 11 O 1.21277 * 120.00342 * 355.28548 * 10 9 6 12 12 C 1.50704 * 119.99644 * 175.29429 * 10 9 6 13 13 C 1.53000 * 109.47490 * 64.99644 * 12 10 9 14 14 O 1.42905 * 109.46888 * 184.99946 * 12 10 9 15 15 C 1.35903 * 116.99949 * 157.31103 * 14 12 10 16 16 C 1.38730 * 120.05457 * 356.41108 * 15 14 12 17 17 C 1.38142 * 119.94151 * 179.74758 * 16 15 14 18 18 C 1.38275 * 120.05334 * 0.50417 * 17 16 15 19 19 C 1.50702 * 119.94216 * 179.74900 * 18 17 16 20 20 O 1.42896 * 109.46825 * 245.02171 * 19 18 17 21 21 Si 1.86300 * 109.47169 * 5.02136 * 19 18 17 22 22 C 1.38266 * 120.11088 * 359.77037 * 18 17 16 23 23 C 1.38136 * 120.05508 * 359.97438 * 22 18 17 24 24 C 1.53778 * 113.61197 * 247.49730 * 3 2 1 25 25 H 1.08993 * 109.47388 * 60.00469 * 1 2 3 26 26 H 1.09006 * 109.46864 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47478 * 299.99861 * 1 2 3 28 28 H 1.08995 * 113.60975 * 334.56199 * 5 3 2 29 29 H 1.09001 * 113.61283 * 203.66296 * 5 3 2 30 30 H 1.09000 * 109.47139 * 306.59478 * 7 6 5 31 31 H 1.09003 * 109.46671 * 66.59082 * 7 6 5 32 32 H 0.96703 * 113.99786 * 180.02562 * 8 7 6 33 33 H 0.97006 * 120.00357 * 123.38797 * 9 6 5 34 34 H 1.09004 * 109.47177 * 304.99268 * 12 10 9 35 35 H 1.08997 * 109.47070 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46750 * 300.00382 * 13 12 10 37 37 H 1.09000 * 109.46553 * 59.99905 * 13 12 10 38 38 H 1.07996 * 120.02634 * 359.97438 * 16 15 14 39 39 H 1.08001 * 119.97673 * 180.27610 * 17 16 15 40 40 H 1.09003 * 109.47145 * 125.01862 * 19 18 17 41 41 H 0.96702 * 114.00227 * 179.97438 * 20 19 18 42 42 H 1.48499 * 110.00189 * 300.00144 * 21 19 18 43 43 H 1.48496 * 110.00154 * 61.31979 * 21 19 18 44 44 H 1.08002 * 119.96913 * 180.02562 * 22 18 17 45 45 H 1.08001 * 120.02463 * 180.02562 * 23 22 18 46 46 H 1.09004 * 113.61657 * 156.33938 * 24 3 2 47 47 H 1.08996 * 113.61938 * 25.42946 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0798 0.3226 5 6 3.3755 1.3720 0.7045 6 6 4.0061 1.0330 -0.6564 7 6 5.2920 1.8098 -0.9466 8 8 5.7167 1.5450 -2.2851 9 7 4.1437 -0.4054 -0.8977 10 6 4.8361 -1.1707 -0.0310 11 8 5.4169 -0.6571 0.9016 12 6 4.8889 -2.6648 -0.2209 13 6 5.6277 -2.9880 -1.5211 14 8 5.5786 -3.2608 0.8798 15 6 5.3229 -4.5717 1.1312 16 6 4.3720 -5.2501 0.3828 17 6 4.1177 -6.5839 0.6370 18 6 4.8025 -7.2400 1.6433 19 6 4.5190 -8.6936 1.9221 20 8 3.9507 -8.8263 3.2264 21 14 3.3216 -9.3473 0.6534 22 6 5.7466 -6.5644 2.3943 23 6 6.0083 -5.2320 2.1406 24 6 2.7534 1.6488 -1.3018 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.5169 0.5959 1.4566 29 1 3.6310 2.3671 1.0684 30 1 5.1060 2.8773 -0.8289 31 1 6.0701 1.4975 -0.2501 32 1 6.5285 2.0054 -2.5385 33 1 3.7397 -0.8063 -1.6832 34 1 3.8745 -3.0607 -0.2713 35 1 5.6662 -4.0686 -1.6581 36 1 5.1016 -2.5334 -2.3605 37 1 6.6420 -2.5921 -1.4705 38 1 3.8337 -4.7369 -0.4002 39 1 3.3807 -7.1138 0.0517 40 1 5.4482 -9.2613 1.8711 41 1 3.7418 -9.7375 3.4737 42 1 2.0506 -8.5816 0.7127 43 1 3.9137 -9.2442 -0.7044 44 1 6.2805 -7.0792 3.1795 45 1 6.7461 -4.7049 2.7273 46 1 2.8389 2.7197 -1.4863 47 1 2.3927 1.0963 -2.1693 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_10157680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:34 Heat of formation + Delta-G solvation = -127.505117 kcal Electronic energy + Delta-G solvation = -30414.829233 eV Core-core repulsion = 26145.523570 eV Total energy + Delta-G solvation = -4269.305663 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.15660 -41.43629 -39.97927 -38.92308 -37.93147 -37.22255 -36.59392 -34.65602 -33.02182 -32.03849 -31.64365 -29.00425 -27.37180 -26.94109 -26.75898 -25.62361 -24.43359 -23.42019 -22.42644 -21.46257 -20.43528 -19.60934 -18.73444 -18.34638 -18.25469 -17.69493 -17.24544 -16.94202 -16.88692 -16.77085 -16.62524 -16.15220 -15.88277 -15.83170 -15.52707 -15.35204 -15.04383 -14.70433 -14.63113 -14.35114 -13.98382 -13.81635 -13.68766 -13.64320 -13.46927 -13.36688 -13.32354 -13.02832 -12.78627 -12.42384 -12.34059 -12.26275 -11.96830 -11.95805 -11.85987 -11.60889 -11.14537 -10.71100 -10.59396 -10.28230 -10.21299 -10.09646 -9.35054 -4.93712 0.09217 0.13734 1.31506 1.36112 1.42359 1.64884 1.96900 2.37016 2.47259 2.66160 2.99420 3.33093 3.42050 3.42640 3.48604 3.55659 3.60489 3.67281 3.71132 3.80568 3.94025 4.08560 4.10129 4.22853 4.29636 4.36295 4.37178 4.45244 4.48977 4.50145 4.50623 4.57270 4.58067 4.59590 4.65334 4.78196 4.78645 4.83498 4.94808 4.96322 4.99853 5.03296 5.07189 5.33631 5.45236 5.54784 6.12741 6.22257 6.39699 6.76913 6.93332 7.06614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.062 3.938 4 H 0.098 0.902 5 C -0.144 4.144 6 C 0.151 3.849 7 C 0.078 3.922 8 O -0.580 6.580 9 N -0.674 5.674 10 C 0.525 3.475 11 O -0.562 6.562 12 C 0.063 3.937 13 C -0.168 4.168 14 O -0.307 6.307 15 C 0.123 3.877 16 C -0.206 4.206 17 C -0.095 4.095 18 C -0.129 4.129 19 C -0.076 4.076 20 O -0.566 6.566 21 Si 0.773 3.227 22 C -0.053 4.053 23 C -0.160 4.160 24 C -0.134 4.134 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.395 0.605 33 H 0.414 0.586 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.403 0.597 42 H -0.296 1.296 43 H -0.286 1.286 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.126 0.874 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -1.282 -4.386 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C 0.004 3.996 4 H 0.116 0.884 5 C -0.182 4.182 6 C 0.064 3.936 7 C -0.001 4.001 8 O -0.387 6.387 9 N -0.327 5.327 10 C 0.310 3.690 11 O -0.440 6.440 12 C 0.004 3.996 13 C -0.225 4.225 14 O -0.220 6.220 15 C 0.077 3.923 16 C -0.224 4.224 17 C -0.113 4.113 18 C -0.129 4.129 19 C -0.185 4.185 20 O -0.376 6.376 21 Si 0.679 3.321 22 C -0.071 4.071 23 C -0.178 4.178 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.244 0.756 33 H 0.251 0.749 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.169 0.831 39 H 0.143 0.857 40 H 0.112 0.888 41 H 0.254 0.746 42 H -0.224 1.224 43 H -0.213 1.213 44 H 0.167 0.833 45 H 0.156 0.844 46 H 0.144 0.856 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.948 -0.508 -4.321 5.875 hybrid contribution 0.571 0.847 -0.086 1.025 sum -3.377 0.338 -4.406 5.562 Atomic orbital electron populations 1.22955 0.79593 1.03515 1.00940 1.87871 1.21079 1.27122 1.94621 1.23170 0.94355 0.85722 0.96382 0.88375 1.23589 0.94919 1.03587 0.96091 1.21391 0.94331 0.80287 0.97569 1.22440 0.95233 0.98798 0.83668 1.86392 1.48266 1.74540 1.29531 1.45134 1.53887 1.07225 1.26412 1.20207 0.78244 0.88410 0.82105 1.90702 1.45169 1.75086 1.32999 1.22379 0.99076 0.90704 0.87453 1.22294 1.01580 1.04170 0.94450 1.86192 1.64506 1.21975 1.49349 1.19211 0.94753 0.82970 0.95330 1.21327 1.01398 0.95627 1.04087 1.20861 0.98418 0.94400 0.97612 1.19670 0.99022 0.96268 0.97929 1.24791 1.05466 0.94413 0.93874 1.86451 1.84223 1.35059 1.31826 0.94401 0.75512 0.87617 0.74534 1.21035 0.95794 0.92580 0.97671 1.20725 1.02858 0.95112 0.99115 1.23735 0.92575 1.03054 0.97854 0.92542 0.89207 0.93510 0.92502 0.86016 0.90233 0.95074 0.75596 0.74931 0.86727 0.89972 0.87776 0.91896 0.83118 0.85728 0.88812 0.74592 1.22428 1.21335 0.83252 0.84399 0.85568 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.39 -1.03 10.13 -148.98 -1.51 -2.54 16 3 C 0.06 -0.04 4.37 31.12 0.14 0.10 16 4 H 0.10 -0.43 7.87 -2.39 -0.02 -0.45 16 5 C -0.14 -0.44 6.72 31.12 0.21 -0.23 16 6 C 0.15 0.31 0.76 4.13 0.00 0.31 16 7 C 0.08 0.13 6.40 71.98 0.46 0.59 16 8 O -0.58 -0.59 13.54 -148.98 -2.02 -2.61 16 9 N -0.67 -2.26 4.47 -420.54 -1.88 -4.14 16 10 C 0.52 4.93 6.69 87.66 0.59 5.51 16 11 O -0.56 -10.10 14.42 15.97 0.23 -9.87 16 12 C 0.06 0.36 2.66 29.85 0.08 0.44 16 13 C -0.17 -0.11 9.19 71.98 0.66 0.55 16 14 O -0.31 -3.76 9.35 -73.47 -0.69 -4.44 16 15 C 0.12 1.23 6.53 22.51 0.15 1.37 16 16 C -0.21 -1.37 8.32 22.36 0.19 -1.19 16 17 C -0.10 -0.67 8.66 22.26 0.19 -0.48 16 18 C -0.13 -0.85 5.39 -19.85 -0.11 -0.96 16 19 C -0.08 -0.04 2.79 71.24 0.20 0.16 16 20 O -0.57 -0.53 12.81 -148.98 -1.91 -2.44 16 21 Si 0.77 -1.22 29.85 68.60 2.05 0.83 16 22 C -0.05 -0.36 9.68 22.25 0.22 -0.15 16 23 C -0.16 -1.46 9.99 22.36 0.22 -1.24 16 24 C -0.13 0.41 7.23 31.12 0.22 0.64 16 25 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.09 -0.29 8.14 -2.38 -0.02 -0.31 16 27 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 0.62 6.80 -2.39 -0.02 0.60 16 29 H 0.12 -0.15 8.10 -2.39 -0.02 -0.17 16 30 H 0.08 -0.26 8.09 -2.39 -0.02 -0.28 16 31 H 0.03 0.23 7.45 -2.39 -0.02 0.21 16 32 H 0.39 -2.43 9.12 -74.05 -0.68 -3.11 16 33 H 0.41 -0.45 8.36 -92.70 -0.77 -1.23 16 34 H 0.12 0.21 6.01 -2.38 -0.01 0.19 16 35 H 0.08 -0.03 7.29 -2.39 -0.02 -0.05 16 36 H 0.10 -0.46 7.77 -2.39 -0.02 -0.48 16 37 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.15 0.23 5.68 -2.91 -0.02 0.21 16 39 H 0.13 0.65 4.86 -2.91 -0.01 0.63 16 40 H 0.09 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.40 -3.98 8.74 -74.06 -0.65 -4.63 16 42 H -0.30 -1.71 7.05 99.48 0.70 -1.00 16 43 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 44 H 0.15 0.45 8.06 -2.91 -0.02 0.42 16 45 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.13 -0.88 8.06 -2.38 -0.02 -0.90 16 47 H 0.09 -0.27 8.12 -2.39 -0.02 -0.29 16 Total: 0.00 -26.94 383.90 -2.12 -29.06 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -1.04 Total: -10.45 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.65 Total: 6.60 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -1.88 Total: -4.14 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -5.89 Total: -21.91 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.05 Total: 0.83 kcal Total: -26.94 -2.12 -29.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_10157680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.445 kcal (2) G-P(sol) polarization free energy of solvation -26.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds