Wall clock time and date at job start Sun Mar 7 2021 09:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 113.99797 * 2 1 4 4 H 1.08998 * 112.85120 * 18.80582 * 3 2 1 5 5 C 1.53784 * 113.61583 * 150.00075 * 3 2 1 6 6 C 1.53774 * 87.08288 * 89.11570 * 5 3 2 7 7 C 1.52997 * 113.61633 * 139.98167 * 6 5 3 8 8 O 1.42901 * 109.47354 * 175.48223 * 7 6 5 9 9 N 1.46500 * 113.61451 * 270.80079 * 6 5 3 10 10 C 1.34771 * 120.00312 * 293.65472 * 9 6 5 11 11 O 1.21703 * 120.00001 * 5.13825 * 10 9 6 12 12 C 1.46428 * 120.00226 * 185.14605 * 10 9 6 13 13 C 1.34815 * 119.99934 * 179.97438 * 12 10 9 14 14 C 1.47205 * 119.99655 * 180.02562 * 13 12 10 15 15 C 1.39838 * 120.17368 * 359.72029 * 14 13 12 16 16 C 1.37887 * 119.82510 * 179.74887 * 15 14 13 17 17 C 1.38404 * 120.17261 * 0.55431 * 16 15 14 18 18 C 1.50700 * 119.82822 * 179.72524 * 17 16 15 19 19 O 1.42904 * 109.46725 * 244.97732 * 18 17 16 20 20 Si 1.86301 * 109.47291 * 4.97346 * 18 17 16 21 21 C 1.38407 * 120.34443 * 359.69404 * 17 16 15 22 22 C 1.37892 * 120.16880 * 0.03026 * 21 17 16 23 23 C 1.53777 * 113.61635 * 247.49717 * 3 2 1 24 24 H 1.09001 * 109.47232 * 60.00128 * 1 2 3 25 25 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47572 * 300.00088 * 1 2 3 27 27 H 1.09006 * 113.61441 * 334.56314 * 5 3 2 28 28 H 1.09003 * 113.61706 * 203.66654 * 5 3 2 29 29 H 1.09003 * 109.47095 * 55.48440 * 7 6 5 30 30 H 1.09001 * 109.47095 * 295.48432 * 7 6 5 31 31 H 0.96706 * 114.00011 * 180.02562 * 8 7 6 32 32 H 0.97006 * 120.00224 * 113.65064 * 9 6 5 33 33 H 1.07996 * 120.00002 * 359.97438 * 12 10 9 34 34 H 1.07996 * 120.00064 * 359.97438 * 13 12 10 35 35 H 1.07998 * 120.08124 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.91176 * 180.27570 * 16 15 14 37 37 H 1.08994 * 109.47459 * 124.97510 * 18 17 16 38 38 H 0.96702 * 113.99818 * 180.02562 * 19 18 17 39 39 H 1.48501 * 109.99930 * 300.00497 * 20 18 17 40 40 H 1.48505 * 109.99760 * 61.31940 * 20 18 17 41 41 H 1.07999 * 119.91330 * 180.02562 * 21 17 16 42 42 H 1.07997 * 120.08235 * 180.02562 * 22 21 17 43 43 H 1.09000 * 113.61770 * 156.33547 * 23 3 2 44 44 H 1.09005 * 113.61503 * 25.42806 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0061 1.0332 -0.6564 7 6 5.2908 1.8114 -0.9474 8 8 5.8558 1.3550 -2.1781 9 7 4.1454 -0.4052 -0.8968 10 6 4.9911 -1.1356 -0.1434 11 8 5.5685 -0.6207 0.7961 12 6 5.2155 -2.5486 -0.4552 13 6 6.0619 -3.2790 0.2982 14 6 6.2878 -4.6993 -0.0157 15 6 5.6220 -5.2961 -1.0909 16 6 5.8429 -6.6257 -1.3816 17 6 6.7123 -7.3723 -0.6055 18 6 6.9432 -8.8265 -0.9265 19 8 6.4556 -9.6344 0.1466 20 14 6.0404 -9.2672 -2.4955 21 6 7.3711 -6.7903 0.4635 22 6 7.1650 -5.4602 0.7635 23 6 2.7533 1.6490 -1.3017 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.5170 0.5959 1.4567 28 1 3.6310 2.3672 1.0685 29 1 6.0038 1.6510 -0.1387 30 1 5.0621 2.8743 -1.0247 31 1 6.6749 1.8055 -2.4258 32 1 3.6290 -0.8321 -1.5983 33 1 4.7030 -3.0056 -1.2887 34 1 6.5747 -2.8219 1.1315 35 1 4.9400 -4.7158 -1.6946 36 1 5.3329 -7.0868 -2.2144 37 1 8.0104 -9.0043 -1.0593 38 1 6.5719 -10.5844 0.0080 39 1 4.5843 -9.0292 -2.3275 40 1 6.5605 -8.4562 -3.6256 41 1 8.0482 -7.3793 1.0642 42 1 7.6801 -5.0074 1.5977 43 1 2.8388 2.7198 -1.4862 44 1 2.3926 1.0964 -2.1693 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_12360594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:23 Heat of formation + Delta-G solvation = -79.595938 kcal Electronic energy + Delta-G solvation = -26550.611771 eV Core-core repulsion = 22629.377277 eV Total energy + Delta-G solvation = -3921.234494 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.80098 -40.72933 -39.72193 -37.97633 -37.69875 -36.61524 -35.20656 -34.05029 -32.36869 -31.38591 -29.03918 -27.38393 -27.17645 -26.87618 -24.58188 -24.13955 -23.09970 -22.04542 -20.50515 -20.33727 -18.72978 -18.38191 -18.29664 -17.67455 -17.54136 -16.93408 -16.76840 -16.63156 -16.26293 -16.09274 -15.86817 -15.55489 -15.21892 -15.15589 -14.94702 -14.68159 -14.37809 -14.08987 -13.87476 -13.69085 -13.64558 -13.37178 -13.26971 -13.04610 -12.76178 -12.40154 -12.22350 -12.06673 -11.99370 -11.96928 -11.57896 -11.41381 -11.19107 -10.71592 -10.57246 -10.31280 -10.15003 -10.01527 -9.34565 -4.95564 -0.65465 0.21536 0.80003 1.28574 1.63299 1.95321 2.09445 2.20939 2.66723 2.68567 3.07240 3.35396 3.41868 3.45846 3.56457 3.60956 3.71974 3.74040 3.88915 4.04291 4.08277 4.13822 4.19341 4.28673 4.33115 4.42982 4.46506 4.47929 4.51711 4.59648 4.61869 4.67055 4.69876 4.78464 4.83258 4.84690 4.95655 4.97806 5.00667 5.05330 5.25546 5.32917 5.46581 5.57841 5.74661 6.24517 6.54372 6.76887 6.89133 7.22373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.062 3.938 4 H 0.099 0.901 5 C -0.142 4.142 6 C 0.149 3.851 7 C 0.077 3.923 8 O -0.582 6.582 9 N -0.677 5.677 10 C 0.550 3.450 11 O -0.584 6.584 12 C -0.208 4.208 13 C -0.021 4.021 14 C -0.080 4.080 15 C -0.100 4.100 16 C -0.143 4.143 17 C -0.081 4.081 18 C -0.082 4.082 19 O -0.563 6.563 20 Si 0.774 3.226 21 C -0.101 4.101 22 C -0.097 4.097 23 C -0.140 4.140 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.120 0.880 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.393 0.607 32 H 0.410 0.590 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.404 0.596 39 H -0.296 1.296 40 H -0.288 1.288 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.127 0.873 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -1.054 -3.499 3.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C 0.004 3.996 4 H 0.117 0.883 5 C -0.180 4.180 6 C 0.062 3.938 7 C -0.002 4.002 8 O -0.390 6.390 9 N -0.326 5.326 10 C 0.340 3.660 11 O -0.467 6.467 12 C -0.228 4.228 13 C -0.041 4.041 14 C -0.080 4.080 15 C -0.118 4.118 16 C -0.161 4.161 17 C -0.081 4.081 18 C -0.191 4.191 19 O -0.374 6.374 20 Si 0.680 3.320 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.178 4.178 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.242 0.758 32 H 0.247 0.753 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.256 0.744 39 H -0.224 1.224 40 H -0.216 1.216 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.145 0.855 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.834 -0.377 -3.263 3.762 hybrid contribution 0.291 0.811 0.123 0.871 sum -1.544 0.434 -3.140 3.525 Atomic orbital electron populations 1.22953 0.79622 1.03514 1.00912 1.87888 1.21070 1.27136 1.94609 1.23150 0.94437 0.85692 0.96290 0.88348 1.23601 0.94778 1.03424 0.96245 1.21392 0.94134 0.80938 0.97341 1.22488 0.94177 0.97518 0.86005 1.86423 1.45197 1.67111 1.40252 1.45181 1.43055 1.07614 1.36735 1.18475 0.78610 0.87359 0.81575 1.90759 1.51193 1.73955 1.30747 1.23010 1.03257 0.93100 1.03471 1.22318 0.93743 0.91213 0.96815 1.19126 0.98788 0.93176 0.96891 1.21533 0.98948 0.94534 0.96759 1.20994 0.99277 0.95359 1.00459 1.19926 0.96698 0.95214 0.96281 1.24864 1.04945 0.88545 1.00792 1.86445 1.84643 1.22986 1.43280 0.94384 0.75886 0.88708 0.73025 1.21196 0.99603 0.94698 0.96373 1.21722 0.96677 0.93949 0.99108 1.23816 0.92995 1.03057 0.97936 0.92713 0.89217 0.93352 0.92437 0.86142 0.94623 0.90144 0.75794 0.75346 0.83425 0.85180 0.83580 0.86113 0.88545 0.74437 1.22413 1.21579 0.83740 0.83394 0.85482 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.39 -1.41 10.13 -148.98 -1.51 -2.92 16 3 C 0.06 0.00 4.37 31.12 0.14 0.14 16 4 H 0.10 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.14 -0.48 6.79 31.12 0.21 -0.27 16 6 C 0.15 0.50 0.83 4.13 0.00 0.50 16 7 C 0.08 0.23 6.26 71.98 0.45 0.68 16 8 O -0.58 -2.22 13.33 -148.98 -1.99 -4.20 16 9 N -0.68 -3.81 4.33 -424.71 -1.84 -5.65 16 10 C 0.55 5.60 7.29 86.38 0.63 6.23 16 11 O -0.58 -9.75 14.32 -4.36 -0.06 -9.81 16 12 C -0.21 -1.25 9.41 23.62 0.22 -1.03 16 13 C -0.02 -0.14 9.46 23.84 0.23 0.09 16 14 C -0.08 -0.47 5.87 -20.15 -0.12 -0.59 16 15 C -0.10 -0.52 9.41 22.57 0.21 -0.31 16 16 C -0.14 -0.90 8.65 22.23 0.19 -0.71 16 17 C -0.08 -0.44 5.39 -19.78 -0.11 -0.55 16 18 C -0.08 0.02 2.79 71.24 0.20 0.22 16 19 O -0.56 -0.02 12.81 -148.98 -1.91 -1.92 16 20 Si 0.77 -1.31 29.83 68.60 2.05 0.73 16 21 C -0.10 -0.45 9.66 22.23 0.21 -0.24 16 22 C -0.10 -0.44 9.80 22.58 0.22 -0.22 16 23 C -0.14 0.27 7.19 31.12 0.22 0.49 16 24 H 0.05 -0.23 8.14 -2.39 -0.02 -0.24 16 25 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 26 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.06 0.61 7.28 -2.38 -0.02 0.59 16 28 H 0.12 -0.13 8.10 -2.39 -0.02 -0.14 16 29 H 0.04 0.27 7.41 -2.39 -0.02 0.25 16 30 H 0.08 -0.22 7.85 -2.39 -0.02 -0.23 16 31 H 0.39 -1.46 9.12 -74.05 -0.68 -2.14 16 32 H 0.41 0.96 8.64 -92.70 -0.80 0.16 16 33 H 0.15 0.13 6.07 -2.91 -0.02 0.11 16 34 H 0.13 1.01 7.52 -2.91 -0.02 0.99 16 35 H 0.15 0.13 6.17 -2.91 -0.02 0.11 16 36 H 0.12 0.63 4.84 -2.91 -0.01 0.61 16 37 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 38 H 0.40 -4.32 8.74 -74.06 -0.65 -4.97 16 39 H -0.30 -1.71 7.04 99.48 0.70 -1.01 16 40 H -0.29 -1.09 7.11 99.48 0.71 -0.38 16 41 H 0.14 0.17 8.06 -2.91 -0.02 0.14 16 42 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.13 -0.80 7.90 -2.39 -0.02 -0.82 16 44 H 0.08 -0.12 8.10 -2.38 -0.02 -0.14 16 Total: 0.00 -24.31 367.06 -2.15 -26.46 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -1.04 Total: -8.31 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.15 Total: 5.62 kcal Atomic # 7 Polarization: -3.81 SS G_CDS: -1.84 Total: -5.65 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -5.47 Total: -18.86 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.05 Total: 0.73 kcal Total: -24.31 -2.15 -26.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_12360594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.139 kcal (2) G-P(sol) polarization free energy of solvation -24.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds