Wall clock time and date at job start Sun Mar 7 2021 09:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35888 * 116.99629 * 2 1 4 4 C 1.38820 * 119.93291 * 180.02562 * 3 2 1 5 5 C 1.37927 * 120.06145 * 180.02562 * 4 3 2 6 6 C 1.39348 * 119.93438 * 359.97025 * 5 4 3 7 7 C 1.48414 * 120.06074 * 179.97438 * 6 5 4 8 8 N 1.31621 * 126.04033 * 317.13976 * 7 6 5 9 9 N 1.40074 * 108.10957 * 180.02562 * 8 7 6 10 10 C 1.46495 * 125.92785 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46854 * 305.01429 * 10 9 8 12 12 O 1.21275 * 120.00218 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99918 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00223 * 185.03282 * 13 11 10 15 15 C 1.53008 * 112.84453 * 65.02908 * 14 13 11 16 16 O 1.42903 * 109.46987 * 60.40585 * 15 14 13 17 17 C 1.53782 * 113.61619 * 196.22481 * 14 13 11 18 18 C 1.53957 * 87.01866 * 89.23351 * 17 14 13 19 19 H 1.08999 * 113.66739 * 139.93250 * 18 17 14 20 20 O 1.42903 * 113.60908 * 270.80033 * 18 17 14 21 21 C 1.42892 * 113.99768 * 247.53133 * 20 18 17 22 22 C 1.53779 * 113.61649 * 293.83870 * 14 13 11 23 23 C 1.35033 * 108.13755 * 0.22438 * 9 8 7 24 24 C 1.35086 * 107.98474 * 359.63470 * 23 9 8 25 25 C 1.50705 * 126.07954 * 180.17001 * 24 23 9 26 26 O 1.42903 * 109.46579 * 103.54967 * 25 24 23 27 27 Si 1.86299 * 109.46941 * 343.55122 * 25 24 23 28 28 C 1.39358 * 119.87740 * 0.25661 * 6 5 4 29 29 C 1.37925 * 119.92828 * 359.49070 * 28 6 5 30 30 H 1.09008 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47646 * 300.00160 * 1 2 3 32 32 H 1.08996 * 109.47593 * 60.00763 * 1 2 3 33 33 H 1.07998 * 119.97218 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.03065 * 179.97438 * 5 4 3 35 35 H 1.09007 * 109.46707 * 185.02525 * 10 9 8 36 36 H 1.08996 * 109.47479 * 65.02188 * 10 9 8 37 37 H 0.97003 * 119.99830 * 5.03966 * 13 11 10 38 38 H 1.08999 * 109.47232 * 300.40189 * 15 14 13 39 39 H 1.09006 * 109.46699 * 180.40279 * 15 14 13 40 40 H 0.96697 * 113.99454 * 179.97438 * 16 15 14 41 41 H 1.09001 * 113.61132 * 203.74752 * 17 14 13 42 42 H 1.08990 * 113.61399 * 334.65187 * 17 14 13 43 43 H 1.09004 * 109.47423 * 300.00188 * 21 20 18 44 44 H 1.09008 * 109.47307 * 60.00090 * 21 20 18 45 45 H 1.08995 * 109.47490 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.61397 * 25.33956 * 22 14 13 47 47 H 1.09003 * 113.61567 * 156.16679 * 22 14 13 48 48 H 1.07999 * 126.00882 * 179.73840 * 23 9 8 49 49 H 1.08991 * 109.47080 * 223.55156 * 25 24 23 50 50 H 0.96702 * 113.99484 * 179.97438 * 26 25 24 51 51 H 1.48500 * 109.99834 * 59.99938 * 27 25 24 52 52 H 1.48494 * 109.99749 * 181.31534 * 27 25 24 53 53 H 1.08000 * 120.03300 * 179.72209 * 28 6 5 54 54 H 1.08006 * 119.96287 * 180.27513 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 3.4322 1.2819 -0.0005 5 6 4.0611 2.5095 0.0000 6 6 3.3033 3.6790 0.0004 7 6 3.9771 5.0014 0.0016 8 7 5.0235 5.3367 0.7262 9 7 5.3466 6.6681 0.4343 10 6 6.4472 7.4345 1.0235 11 6 6.3302 7.4078 2.5257 12 8 5.4176 6.8072 3.0523 13 7 7.2398 8.0513 3.2841 14 6 7.1909 7.9347 4.7436 15 6 7.4639 6.5118 5.2353 16 8 8.7683 6.1052 4.8167 17 6 8.0141 9.0080 5.4752 18 6 6.7467 9.8816 5.4514 19 1 6.5826 10.4397 6.3732 20 8 6.6346 10.6958 4.2823 21 6 6.7575 12.0967 4.5358 22 6 5.9410 8.5741 5.3711 23 6 4.4640 7.1240 -0.4803 24 6 3.6093 6.1194 -0.7722 25 6 2.4632 6.1847 -1.7486 26 8 2.8248 5.5069 -2.9535 27 14 2.0738 7.9660 -2.1308 28 6 1.9118 3.6045 0.0058 29 6 1.2885 2.3741 0.0000 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 4.0190 0.3752 -0.0005 34 1 5.1396 2.5643 0.0000 35 1 6.3998 8.4659 0.6737 36 1 7.3980 6.9930 0.7251 37 1 7.9268 8.5917 2.8634 38 1 6.7201 5.8337 4.8168 39 1 7.4071 6.4864 6.3236 40 1 9.0095 5.2109 5.0945 41 1 8.3224 8.7132 6.4784 42 1 8.8340 9.4101 4.8804 43 1 5.9728 12.4118 5.2236 44 1 7.7324 12.3017 4.9783 45 1 6.6608 12.6453 3.5989 46 1 5.0899 8.6268 4.6922 47 1 5.6807 8.1596 6.3451 48 1 4.4457 8.1167 -0.9052 49 1 1.5863 5.7068 -1.3120 50 1 2.1326 5.5088 -3.6287 51 1 3.2616 8.6289 -2.7266 52 1 0.9247 8.0448 -3.0680 53 1 1.3220 4.5093 0.0107 54 1 0.2100 2.3158 -0.0004 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_12622750.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:38 Heat of formation + Delta-G solvation = -42.670365 kcal Electronic energy + Delta-G solvation = -39234.966962 eV Core-core repulsion = 34142.734529 eV Total energy + Delta-G solvation = -5092.232433 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.187 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.49310 -41.70612 -40.99448 -39.66580 -38.44790 -37.90842 -37.71987 -36.55631 -34.70018 -33.97220 -32.37996 -32.01580 -31.14478 -29.31582 -28.60373 -27.89585 -27.28811 -26.83874 -25.91527 -24.17733 -23.64992 -23.26685 -21.91456 -21.51157 -20.84565 -20.31180 -19.18301 -18.57022 -18.40108 -18.25362 -18.14522 -17.56729 -17.13747 -16.95328 -16.72239 -16.67055 -16.52943 -16.20047 -16.01359 -15.87156 -15.75803 -15.38775 -15.13968 -15.03878 -14.82255 -14.79657 -14.58299 -14.42271 -14.17931 -13.82201 -13.73462 -13.65435 -13.48140 -13.30067 -13.25747 -12.99058 -12.78507 -12.72124 -12.64914 -12.28531 -12.16549 -12.10148 -11.92506 -11.81704 -11.56837 -11.49105 -11.22172 -10.83064 -10.52194 -10.43673 -10.23283 -10.03891 -9.98707 -9.65737 -8.96506 -4.85614 0.09728 0.31706 0.81196 1.26153 1.39009 1.56013 1.63740 1.65812 1.98693 2.09788 2.32734 2.71363 2.75989 3.02788 3.30896 3.48609 3.57891 3.60937 3.63312 3.75529 3.77068 3.79805 3.88040 3.93286 4.10270 4.12882 4.14148 4.23118 4.28590 4.34114 4.37376 4.39069 4.41590 4.50308 4.51667 4.57491 4.59024 4.62798 4.64447 4.70982 4.71576 4.75459 4.84195 4.89343 4.92324 5.00952 5.01940 5.04819 5.05798 5.24587 5.50468 5.53417 5.57305 5.67313 5.89897 6.28570 6.38434 6.52721 6.61248 6.72186 6.74679 7.22492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.163 4.163 5 C -0.065 4.065 6 C -0.059 4.059 7 C 0.116 3.884 8 N -0.290 5.290 9 N -0.357 5.357 10 C 0.110 3.890 11 C 0.504 3.496 12 O -0.553 6.553 13 N -0.682 5.682 14 C 0.156 3.844 15 C 0.077 3.923 16 O -0.580 6.580 17 C -0.137 4.137 18 C 0.066 3.934 19 H 0.095 0.905 20 O -0.382 6.382 21 C 0.026 3.974 22 C -0.140 4.140 23 C 0.071 3.929 24 C -0.224 4.224 25 C -0.050 4.050 26 O -0.558 6.558 27 Si 0.763 3.237 28 C -0.058 4.058 29 C -0.203 4.203 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.169 0.831 36 H 0.132 0.868 37 H 0.415 0.585 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.393 0.607 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.113 0.887 48 H 0.209 0.791 49 H 0.080 0.920 50 H 0.389 0.611 51 H -0.279 1.279 52 H -0.283 1.283 53 H 0.146 0.854 54 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 7.337 2.756 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.182 4.182 5 C -0.085 4.085 6 C -0.061 4.061 7 C -0.049 4.049 8 N -0.111 5.111 9 N -0.139 5.139 10 C -0.014 4.014 11 C 0.289 3.711 12 O -0.430 6.430 13 N -0.334 5.334 14 C 0.069 3.931 15 C -0.002 4.002 16 O -0.387 6.387 17 C -0.174 4.174 18 C 0.008 3.992 19 H 0.113 0.887 20 O -0.301 6.301 21 C -0.070 4.070 22 C -0.178 4.178 23 C -0.074 4.074 24 C -0.236 4.236 25 C -0.159 4.159 26 O -0.367 6.367 27 Si 0.666 3.334 28 C -0.077 4.077 29 C -0.222 4.222 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.187 0.813 36 H 0.150 0.850 37 H 0.252 0.748 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.242 0.758 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.131 0.869 48 H 0.226 0.774 49 H 0.098 0.902 50 H 0.238 0.762 51 H -0.205 1.205 52 H -0.209 1.209 53 H 0.164 0.836 54 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.354 7.474 3.345 8.197 hybrid contribution -0.459 -0.965 -1.203 1.609 sum -0.106 6.510 2.142 6.854 Atomic orbital electron populations 1.23374 0.76284 1.05631 1.02481 1.86058 1.23623 1.26778 1.88423 1.19265 0.92409 0.84918 0.95721 1.20480 0.92082 0.98515 1.07093 1.21003 0.99843 0.90967 0.96642 1.17836 0.93258 0.89142 1.05890 1.20751 0.94414 0.94300 0.95449 1.77701 1.17241 0.93948 1.22225 1.48032 1.24690 1.08786 1.32371 1.21883 0.89631 0.99428 0.90423 1.20788 0.81909 0.78657 0.89778 1.90772 1.33936 1.43667 1.74597 1.45236 1.32457 1.50446 1.05261 1.21254 0.97959 0.93226 0.80671 1.22417 0.84252 0.95040 0.98513 1.86392 1.33050 1.38071 1.81210 1.23729 0.97318 0.94316 1.02085 1.23143 0.95580 0.91262 0.89215 0.88725 1.87855 1.93162 1.17889 1.31196 1.22961 1.00655 0.80420 1.02968 1.23543 0.96868 0.95285 1.02106 1.22717 0.90367 1.01043 0.93282 1.19563 1.04363 0.93693 1.05941 1.24427 0.96306 1.09991 0.85186 1.86610 1.45897 1.77409 1.26754 0.94269 0.77579 0.74669 0.86905 1.21129 0.92591 0.98264 0.95721 1.21397 1.01371 0.91182 1.08238 0.86536 0.91521 0.91380 0.84343 0.85804 0.81316 0.85026 0.74817 0.95285 0.90913 0.75819 0.86352 0.89623 0.93602 0.93005 0.88683 0.92076 0.86890 0.77410 0.90235 0.76164 1.20519 1.20918 0.83600 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.34 -2.47 10.49 -92.29 -0.97 -3.43 16 3 C 0.12 1.08 6.69 22.55 0.15 1.23 16 4 C -0.16 -1.68 9.97 22.34 0.22 -1.46 16 5 C -0.07 -0.79 9.77 22.46 0.22 -0.57 16 6 C -0.06 -0.72 5.74 -20.03 -0.11 -0.83 16 7 C 0.12 1.53 6.66 42.53 0.28 1.81 16 8 N -0.29 -4.30 11.67 -48.16 -0.56 -4.86 16 9 N -0.36 -2.60 3.40 -351.92 -1.20 -3.79 16 10 C 0.11 -0.06 6.99 85.64 0.60 0.54 16 11 C 0.50 2.66 7.40 87.66 0.65 3.31 16 12 O -0.55 -8.12 13.56 -3.01 -0.04 -8.16 16 13 N -0.68 -0.47 4.63 -420.54 -1.95 -2.41 16 14 C 0.16 0.18 0.72 4.13 0.00 0.18 16 15 C 0.08 0.22 6.26 71.98 0.45 0.67 16 16 O -0.58 -1.50 13.59 -148.98 -2.02 -3.53 16 17 C -0.14 0.47 7.20 31.18 0.22 0.70 16 18 C 0.07 -0.16 4.38 31.18 0.14 -0.02 16 19 H 0.09 -0.52 7.87 -2.39 -0.02 -0.54 16 20 O -0.38 0.25 10.14 -148.98 -1.51 -1.26 16 21 C 0.03 -0.14 10.85 113.37 1.23 1.09 16 22 C -0.14 -0.19 6.80 31.12 0.21 0.02 16 23 C 0.07 0.30 9.96 83.47 0.83 1.14 16 24 C -0.22 -1.78 5.37 -19.95 -0.11 -1.88 16 25 C -0.05 -0.15 2.55 71.24 0.18 0.03 16 26 O -0.56 -3.30 12.86 -148.98 -1.92 -5.21 16 27 Si 0.76 -1.27 30.82 68.60 2.11 0.85 16 28 C -0.06 -0.43 8.85 22.47 0.20 -0.23 16 29 C -0.20 -1.12 9.02 22.33 0.20 -0.92 16 30 H 0.12 -0.55 8.14 -2.38 -0.02 -0.57 16 31 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 32 H 0.07 -0.24 7.65 -2.39 -0.02 -0.26 16 33 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.12 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.17 -1.65 8.07 -2.38 -0.02 -1.67 16 36 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.41 -1.69 8.66 -92.71 -0.80 -2.49 16 38 H 0.03 0.28 7.00 -2.39 -0.02 0.26 16 39 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.39 -1.55 9.12 -74.06 -0.68 -2.22 16 41 H 0.12 -0.72 8.10 -2.39 -0.02 -0.74 16 42 H 0.09 -0.31 8.09 -2.39 -0.02 -0.33 16 43 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.05 -0.35 8.14 -2.38 -0.02 -0.37 16 45 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 46 H 0.06 0.47 7.27 -2.39 -0.02 0.46 16 47 H 0.11 -0.17 8.10 -2.39 -0.02 -0.19 16 48 H 0.21 -0.78 6.38 -2.91 -0.02 -0.80 16 49 H 0.08 0.04 5.49 -2.39 -0.01 0.02 16 50 H 0.39 -0.96 8.74 -74.06 -0.65 -1.60 16 51 H -0.28 -0.67 7.01 99.48 0.70 0.02 16 52 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 53 H 0.15 0.42 6.24 -2.91 -0.02 0.41 16 54 H 0.16 -0.11 6.28 -2.91 -0.02 -0.12 16 Total: 0.00 -33.36 445.95 -2.49 -35.84 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: -1.12 Total: -9.93 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.68 Total: 5.89 kcal Atomic # 7 Polarization: -7.36 SS G_CDS: -3.70 Total: -11.07 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -6.46 Total: -21.58 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.11 Total: 0.85 kcal Total: -33.36 -2.49 -35.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_12622750.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.828 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds