Wall clock time and date at job start Sun Mar 7 2021 09:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 H 1.08992 * 112.84967 * 18.80444 * 3 2 1 5 5 C 1.53781 * 113.61264 * 149.99880 * 3 2 1 6 6 C 1.53782 * 87.08000 * 89.11393 * 5 3 2 7 7 C 1.53004 * 113.61171 * 139.98039 * 6 5 3 8 8 O 1.42901 * 109.46954 * 175.14252 * 7 6 5 9 9 N 1.46496 * 113.61645 * 270.79782 * 6 5 3 10 10 C 1.34771 * 120.00346 * 293.76339 * 9 6 5 11 11 O 1.21575 * 120.00019 * 5.09161 * 10 9 6 12 12 C 1.47720 * 120.00415 * 185.09457 * 10 9 6 13 13 C 1.39715 * 120.02225 * 359.72351 * 12 10 9 14 14 C 1.37659 * 119.97371 * 179.69519 * 13 12 10 15 15 C 1.39507 * 120.02657 * 0.60225 * 14 13 12 16 16 C 1.48281 * 119.97982 * 179.69515 * 15 14 13 17 17 C 1.39400 * 120.12734 * 179.70396 * 16 15 14 18 18 C 1.37999 * 119.86751 * 179.76480 * 17 16 15 19 19 C 1.38328 * 120.13094 * 0.48894 * 18 17 16 20 20 C 1.50700 * 119.87667 * 179.74094 * 19 18 17 21 21 O 1.42897 * 109.47232 * 245.02551 * 20 19 18 22 22 Si 1.86305 * 109.46816 * 5.02163 * 20 19 18 23 23 C 1.38338 * 120.25312 * 359.76671 * 19 18 17 24 24 C 1.38002 * 120.13061 * 359.97438 * 23 19 18 25 25 C 1.39505 * 120.04674 * 359.67429 * 15 14 13 26 26 C 1.37666 * 120.02274 * 0.02562 * 25 15 14 27 27 C 1.53774 * 113.61193 * 247.49643 * 3 2 1 28 28 H 1.09004 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47369 * 300.00359 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.99899 * 1 2 3 31 31 H 1.09000 * 113.61489 * 334.56683 * 5 3 2 32 32 H 1.09000 * 113.69173 * 203.67622 * 5 3 2 33 33 H 1.08989 * 109.47075 * 55.14126 * 7 6 5 34 34 H 1.08997 * 109.47072 * 295.13707 * 7 6 5 35 35 H 0.96696 * 114.00205 * 180.02562 * 8 7 6 36 36 H 0.97005 * 119.99532 * 113.76251 * 9 6 5 37 37 H 1.07996 * 120.00797 * 0.02562 * 13 12 10 38 38 H 1.08002 * 119.99175 * 180.29578 * 14 13 12 39 39 H 1.08002 * 120.06351 * 359.97321 * 17 16 15 40 40 H 1.08007 * 119.93325 * 180.22516 * 18 17 16 41 41 H 1.08999 * 109.47197 * 125.01679 * 20 19 18 42 42 H 0.96699 * 113.99717 * 180.02562 * 21 20 19 43 43 H 1.48493 * 109.99733 * 178.68038 * 22 20 19 44 44 H 1.48496 * 109.99982 * 299.99916 * 22 20 19 45 45 H 1.08004 * 119.93464 * 179.97438 * 23 19 18 46 46 H 1.07996 * 120.06499 * 179.97438 * 24 23 19 47 47 H 1.08003 * 119.99105 * 179.97438 * 25 15 14 48 48 H 1.08011 * 120.00977 * 180.02562 * 26 25 15 49 49 H 1.08998 * 113.61359 * 156.33849 * 27 3 2 50 50 H 1.08997 * 113.61827 * 25.43326 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 0.3238 5 6 3.3755 1.3719 0.7046 6 6 4.0061 1.0330 -0.6565 7 6 5.2909 1.8112 -0.9474 8 8 5.8602 1.3492 -2.1740 9 7 4.1454 -0.4054 -0.8969 10 6 4.9895 -1.1362 -0.1420 11 8 5.5653 -0.6220 0.7972 12 6 5.2150 -2.5619 -0.4557 13 6 4.5492 -3.1549 -1.5314 14 6 4.7649 -4.4820 -1.8266 15 6 5.6384 -5.2381 -1.0446 16 6 5.8649 -6.6693 -1.3595 17 6 6.7417 -7.4262 -0.5839 18 6 6.9448 -8.7589 -0.8788 19 6 6.2879 -9.3414 -1.9477 20 6 6.5184 -10.7958 -2.2682 21 8 7.1540 -10.9078 -3.5430 22 14 7.6089 -11.5542 -0.9618 23 6 5.4207 -8.5939 -2.7241 24 6 5.2056 -7.2616 -2.4355 25 6 6.2994 -4.6486 0.0332 26 6 6.0899 -3.3200 0.3265 27 6 2.7534 1.6488 -1.3017 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5169 0.5958 1.4567 32 1 3.6322 2.3665 1.0692 33 1 6.0015 1.6556 -0.1358 34 1 5.0613 2.8734 -1.0308 35 1 6.6794 1.7993 -2.4216 36 1 3.6301 -0.8318 -1.5994 37 1 3.8696 -2.5708 -2.1342 38 1 4.2540 -4.9394 -2.6610 39 1 7.2586 -6.9712 0.2481 40 1 7.6211 -9.3472 -0.2763 41 1 5.5622 -11.3187 -2.2916 42 1 7.3329 -11.8185 -3.8146 43 1 7.8177 -12.9961 -1.2490 44 1 8.9157 -10.8503 -0.9197 45 1 4.9108 -9.0539 -3.5578 46 1 4.5287 -6.6790 -3.0426 47 1 6.9751 -5.2349 0.6383 48 1 6.6020 -2.8636 1.1608 49 1 2.8389 2.7197 -1.4862 50 1 2.3926 1.0963 -2.1693 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_13158362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:49 Heat of formation + Delta-G solvation = -64.791009 kcal Electronic energy + Delta-G solvation = -32826.305149 eV Core-core repulsion = 28365.496604 eV Total energy + Delta-G solvation = -4460.808545 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.91488 -41.01642 -40.09235 -38.98736 -37.89777 -37.62531 -36.57981 -34.55956 -33.72404 -32.53482 -31.57148 -30.84002 -28.93758 -27.31735 -27.01060 -26.83508 -24.72273 -24.62784 -23.34664 -22.57289 -22.20581 -21.29089 -20.28650 -19.23440 -18.57074 -18.28902 -18.04214 -17.60046 -17.12541 -16.92063 -16.68476 -16.55552 -16.28078 -15.93976 -15.90610 -15.63997 -15.38594 -15.25606 -15.04431 -14.92381 -14.77962 -14.56948 -14.30261 -14.08953 -13.96997 -13.73796 -13.64769 -13.37248 -13.25348 -13.21395 -12.88919 -12.73322 -12.52602 -12.18721 -12.08433 -11.95352 -11.90924 -11.62120 -11.54184 -11.16019 -10.75650 -10.68508 -10.53551 -10.46162 -10.06073 -9.98859 -9.95353 -9.06037 -4.93978 -0.67083 0.35286 0.40435 0.51634 1.28619 1.58137 1.84815 1.93196 2.05850 2.60028 2.71762 2.99742 3.09589 3.36769 3.43854 3.47303 3.58951 3.62710 3.68939 3.81286 3.85792 3.88106 4.01152 4.04152 4.13977 4.24963 4.28683 4.34692 4.36096 4.44317 4.45798 4.50336 4.55990 4.62541 4.63130 4.66314 4.69415 4.71002 4.81998 4.88459 4.89004 4.91903 5.02287 5.04200 5.08044 5.13970 5.20600 5.29083 5.41518 5.50292 5.57421 5.65292 5.80489 5.92682 6.28236 6.53138 6.57167 6.79304 7.21173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.063 3.937 4 H 0.099 0.901 5 C -0.142 4.142 6 C 0.148 3.852 7 C 0.077 3.923 8 O -0.582 6.582 9 N -0.675 5.675 10 C 0.562 3.438 11 O -0.578 6.578 12 C -0.150 4.150 13 C -0.076 4.076 14 C -0.119 4.119 15 C -0.023 4.023 16 C -0.059 4.059 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.085 4.085 21 O -0.558 6.558 22 Si 0.760 3.240 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.070 4.070 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.393 0.607 36 H 0.409 0.591 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.395 0.605 43 H -0.286 1.286 44 H -0.299 1.299 45 H 0.135 0.865 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 0.475 -1.449 5.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C 0.005 3.995 4 H 0.117 0.883 5 C -0.181 4.181 6 C 0.061 3.939 7 C -0.002 4.002 8 O -0.390 6.390 9 N -0.325 5.325 10 C 0.351 3.649 11 O -0.459 6.459 12 C -0.153 4.153 13 C -0.094 4.094 14 C -0.137 4.137 15 C -0.024 4.024 16 C -0.059 4.059 17 C -0.125 4.125 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.194 4.194 21 O -0.368 6.368 22 Si 0.666 3.334 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.089 4.089 27 C -0.177 4.177 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.242 0.758 36 H 0.246 0.754 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.115 0.885 42 H 0.245 0.755 43 H -0.214 1.214 44 H -0.227 1.227 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.167 0.833 48 H 0.146 0.854 49 H 0.146 0.854 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.838 0.537 -0.607 4.905 hybrid contribution 0.589 -0.147 -1.266 1.404 sum -4.248 0.391 -1.873 4.659 Atomic orbital electron populations 1.22959 0.79593 1.03555 1.00895 1.87891 1.21087 1.27075 1.94603 1.23141 0.94406 0.85738 0.96240 0.88321 1.23602 0.94814 1.03445 0.96189 1.21432 0.94237 0.80735 0.97515 1.22486 0.94100 0.97494 0.86077 1.86420 1.45069 1.66879 1.40614 1.45171 1.43145 1.07582 1.36612 1.18401 0.78491 0.86507 0.81501 1.90717 1.51045 1.73500 1.30625 1.20065 1.02216 0.93323 0.99659 1.21395 0.97581 0.95329 0.95127 1.21431 0.98372 0.93537 1.00349 1.19117 0.95937 0.92338 0.94966 1.18920 0.98205 0.92032 0.96749 1.21448 0.97552 0.93582 0.99894 1.21123 0.99717 0.95436 0.97750 1.19606 0.97464 0.94907 0.96166 1.25001 1.04096 0.97260 0.93073 1.86547 1.81661 1.33981 1.34616 0.94146 0.78732 0.75376 0.85173 1.21130 0.97855 0.93900 0.99091 1.21521 0.99412 0.95048 0.96622 1.21388 1.00460 0.94398 0.97661 1.21233 0.95700 0.93789 0.98225 1.23820 0.92839 1.03104 0.97980 0.89134 0.93438 0.92671 0.92436 0.86124 0.94705 0.90073 0.75810 0.75386 0.83547 0.82775 0.83549 0.84215 0.88482 0.75466 1.21355 1.22724 0.84695 0.83549 0.83267 0.85365 0.85412 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.39 -1.02 10.13 -148.98 -1.51 -2.52 16 3 C 0.06 -0.05 4.38 31.12 0.14 0.09 16 4 H 0.10 -0.47 7.87 -2.39 -0.02 -0.49 16 5 C -0.14 -0.39 6.79 31.12 0.21 -0.18 16 6 C 0.15 0.41 0.83 4.13 0.00 0.41 16 7 C 0.08 0.20 6.26 71.98 0.45 0.65 16 8 O -0.58 -2.05 13.32 -148.98 -1.98 -4.03 16 9 N -0.68 -3.50 4.27 -423.48 -1.81 -5.31 16 10 C 0.56 5.95 7.32 86.75 0.64 6.59 16 11 O -0.58 -9.82 14.43 -3.95 -0.06 -9.88 16 12 C -0.15 -1.13 5.88 -20.06 -0.12 -1.24 16 13 C -0.08 -0.18 9.52 22.49 0.21 0.04 16 14 C -0.12 -0.13 9.41 22.44 0.21 0.08 16 15 C -0.02 -0.07 5.88 -19.99 -0.12 -0.19 16 16 C -0.06 -0.15 5.88 -20.05 -0.12 -0.27 16 17 C -0.11 -0.17 9.43 22.49 0.21 0.04 16 18 C -0.12 -0.20 8.65 22.23 0.19 -0.01 16 19 C -0.08 -0.20 5.39 -19.82 -0.11 -0.31 16 20 C -0.09 0.04 2.79 71.24 0.20 0.24 16 21 O -0.56 -1.34 12.81 -148.98 -1.91 -3.25 16 22 Si 0.76 -1.17 29.84 68.60 2.05 0.88 16 23 C -0.10 -0.21 9.67 22.24 0.21 0.00 16 24 C -0.11 -0.14 9.43 22.49 0.21 0.08 16 25 C -0.12 -0.44 9.41 22.44 0.21 -0.23 16 26 C -0.07 -0.51 9.58 22.49 0.22 -0.30 16 27 C -0.14 0.39 7.19 31.12 0.22 0.62 16 28 H 0.09 -0.33 8.14 -2.38 -0.02 -0.35 16 29 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 30 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.06 0.57 7.28 -2.39 -0.02 0.56 16 32 H 0.12 -0.20 8.10 -2.39 -0.02 -0.22 16 33 H 0.03 0.25 7.43 -2.39 -0.02 0.24 16 34 H 0.08 -0.26 7.85 -2.39 -0.02 -0.28 16 35 H 0.39 -1.51 9.12 -74.06 -0.68 -2.19 16 36 H 0.41 0.71 6.70 -92.70 -0.62 0.09 16 37 H 0.15 -0.37 6.40 -2.91 -0.02 -0.39 16 38 H 0.15 -0.63 6.19 -2.91 -0.02 -0.65 16 39 H 0.15 -0.35 6.19 -2.91 -0.02 -0.37 16 40 H 0.14 -0.22 4.85 -2.91 -0.01 -0.23 16 41 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 42 H 0.39 -2.22 8.74 -74.06 -0.65 -2.86 16 43 H -0.29 -0.72 7.11 99.48 0.71 -0.01 16 44 H -0.30 -1.75 7.04 99.48 0.70 -1.05 16 45 H 0.14 -0.02 8.06 -2.91 -0.02 -0.05 16 46 H 0.15 -0.48 6.19 -2.91 -0.02 -0.50 16 47 H 0.15 -0.11 6.19 -2.91 -0.02 -0.13 16 48 H 0.13 1.07 7.64 -2.90 -0.02 1.05 16 49 H 0.13 -0.92 7.90 -2.39 -0.02 -0.94 16 50 H 0.08 -0.22 8.09 -2.39 -0.02 -0.24 16 Total: 0.00 -25.04 406.64 -1.80 -26.84 By element: Atomic # 1 Polarization: -9.08 SS G_CDS: -0.89 Total: -9.98 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.31 Total: 7.25 kcal Atomic # 7 Polarization: -3.50 SS G_CDS: -1.81 Total: -5.31 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -5.46 Total: -19.69 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.05 Total: 0.88 kcal Total: -25.04 -1.80 -26.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_13158362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.952 kcal (2) G-P(sol) polarization free energy of solvation -25.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds