Wall clock time and date at job start Sun Mar 7 2021 09:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00061 * 2 1 4 4 H 1.09001 * 112.90469 * 341.24401 * 3 2 1 5 5 C 1.53780 * 113.61809 * 112.49804 * 3 2 1 6 6 C 1.53782 * 87.07973 * 139.98179 * 5 3 2 7 7 C 1.52996 * 113.61455 * 89.12046 * 6 5 3 8 8 O 1.42900 * 109.47591 * 86.40347 * 7 6 5 9 9 N 1.46503 * 113.69042 * 220.00719 * 6 5 3 10 10 C 1.34771 * 119.99970 * 163.25075 * 9 6 5 11 11 O 1.21513 * 119.99911 * 4.97610 * 10 9 6 12 12 C 1.48167 * 120.00052 * 184.97428 * 10 9 6 13 13 N 1.32720 * 119.72497 * 359.72535 * 12 10 9 14 14 C 1.31518 * 121.64644 * 179.75208 * 13 12 10 15 15 C 1.38563 * 120.89975 * 0.52586 * 14 13 12 16 16 C 1.50704 * 120.32290 * 179.71692 * 15 14 13 17 17 O 1.42908 * 109.46684 * 120.02563 * 16 15 14 18 18 Si 1.86306 * 109.47003 * 0.02846 * 16 15 14 19 19 C 1.38625 * 119.35325 * 359.74752 * 15 14 13 20 20 C 1.38586 * 118.48908 * 359.97438 * 19 15 14 21 21 C 1.53775 * 87.08331 * 334.56858 * 6 5 3 22 22 H 1.08996 * 109.47117 * 60.00637 * 1 2 3 23 23 H 1.09003 * 109.46643 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47208 * 300.00119 * 1 2 3 25 25 H 1.08999 * 113.61374 * 25.43341 * 5 3 2 26 26 H 1.08997 * 113.61952 * 254.53251 * 5 3 2 27 27 H 1.09002 * 109.46878 * 326.40346 * 7 6 5 28 28 H 1.09000 * 109.47227 * 206.40978 * 7 6 5 29 29 H 0.96693 * 114.00311 * 180.02562 * 8 7 6 30 30 H 0.97006 * 119.99646 * 343.25691 * 9 6 5 31 31 H 1.07999 * 119.55272 * 180.27136 * 14 13 12 32 32 H 1.08992 * 109.47588 * 240.02705 * 16 15 14 33 33 H 0.96698 * 113.99613 * 299.99968 * 17 16 15 34 34 H 1.48498 * 109.99780 * 179.97438 * 18 16 15 35 35 H 1.48500 * 109.99715 * 301.31578 * 18 16 15 36 36 H 1.08000 * 120.75566 * 180.02562 * 19 15 14 37 37 H 1.08000 * 120.47072 * 179.97438 * 20 19 15 38 38 H 1.08999 * 113.61641 * 139.98258 * 21 6 5 39 39 H 1.09002 * 113.61571 * 270.88740 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3228 5 6 2.7534 1.6490 1.3018 6 6 3.8227 2.3182 0.4222 7 6 3.5413 3.7937 0.1312 8 8 4.0707 4.5971 1.1877 9 7 5.1941 2.0800 0.8790 10 6 6.2302 2.3050 0.0470 11 8 6.0344 2.7905 -1.0496 12 6 7.6079 1.9605 0.4694 13 7 7.8161 1.4356 1.6705 14 6 9.0224 1.1112 2.0822 15 6 10.1293 1.3174 1.2746 16 6 11.5063 0.9468 1.7620 17 8 12.0764 -0.0261 0.8840 18 14 11.3868 0.2379 3.4807 19 6 9.9577 1.8685 0.0142 20 6 8.6746 2.1951 -0.3953 21 6 3.3756 1.3719 -0.7045 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.1166 0.7742 1.8411 26 1 2.2140 2.3478 1.9411 27 1 2.4651 3.9510 0.0594 28 1 4.0131 4.0747 -0.8104 29 1 3.9280 5.5461 1.0695 30 1 5.3564 1.7603 1.7804 31 1 9.1524 0.6822 3.0647 32 1 12.1373 1.8353 1.7785 33 1 11.5663 -0.8450 0.8201 34 1 12.7383 -0.1322 3.9725 35 1 10.7662 1.2284 4.3966 36 1 10.8045 2.0386 -0.6341 37 1 8.5043 2.6266 -1.3707 38 1 3.3385 1.8470 -1.6848 39 1 3.9088 0.4213 -0.7136 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_13287726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:07 Heat of formation + Delta-G solvation = -87.431479 kcal Electronic energy + Delta-G solvation = -23915.030814 eV Core-core repulsion = 20211.794393 eV Total energy + Delta-G solvation = -3703.236420 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09244 -41.30812 -39.65868 -38.03988 -37.80799 -36.70826 -34.57799 -33.47289 -32.93127 -28.88235 -27.71167 -27.26540 -26.87400 -25.05355 -24.62287 -23.31433 -21.78547 -20.18099 -19.30472 -18.69526 -18.50980 -17.97992 -17.54100 -16.83557 -16.70903 -16.53654 -16.30615 -16.07408 -15.98261 -15.85544 -15.46459 -15.23430 -14.82974 -14.43861 -14.34728 -14.23845 -13.67039 -13.52327 -13.49967 -13.10427 -12.69770 -12.55089 -12.48143 -12.17264 -11.91301 -11.78460 -11.50746 -11.08080 -10.91891 -10.63129 -10.58393 -10.50482 -10.32382 -10.09185 -5.00577 -0.59819 0.07122 1.24493 1.55506 1.63826 1.89233 1.96550 2.66328 2.80670 2.96140 3.01833 3.23939 3.41844 3.50565 3.54284 3.62975 3.68664 3.78133 3.94769 3.96382 4.10986 4.18062 4.37095 4.40710 4.48413 4.56298 4.56527 4.57896 4.63365 4.66363 4.83853 4.85984 4.89548 4.92295 4.97497 5.00643 5.36674 5.42418 6.23853 6.29415 6.61072 6.70847 6.76471 7.06235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.069 3.931 4 H 0.113 0.887 5 C -0.141 4.141 6 C 0.147 3.853 7 C 0.086 3.914 8 O -0.582 6.582 9 N -0.678 5.678 10 C 0.573 3.427 11 O -0.559 6.559 12 C 0.063 3.937 13 N -0.462 5.462 14 C 0.100 3.900 15 C -0.143 4.143 16 C -0.068 4.068 17 O -0.550 6.550 18 Si 0.773 3.227 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.132 4.132 22 H 0.052 0.948 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.396 0.604 30 H 0.417 0.583 31 H 0.186 0.814 32 H 0.120 0.880 33 H 0.397 0.603 34 H -0.294 1.294 35 H -0.279 1.279 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -1.302 1.873 3.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.010 3.990 4 H 0.130 0.870 5 C -0.179 4.179 6 C 0.061 3.939 7 C 0.007 3.993 8 O -0.390 6.390 9 N -0.328 5.328 10 C 0.358 3.642 11 O -0.437 6.437 12 C -0.074 4.074 13 N -0.173 5.173 14 C -0.060 4.060 15 C -0.145 4.145 16 C -0.179 4.179 17 O -0.358 6.358 18 Si 0.678 3.322 19 C -0.079 4.079 20 C -0.136 4.136 21 C -0.171 4.171 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.246 0.754 30 H 0.254 0.746 31 H 0.202 0.798 32 H 0.137 0.863 33 H 0.248 0.752 34 H -0.222 1.222 35 H -0.206 1.206 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.098 0.902 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.628 -1.307 2.606 3.925 hybrid contribution 0.676 1.353 -0.853 1.737 sum -1.952 0.047 1.753 2.624 Atomic orbital electron populations 1.22994 0.79508 1.03825 1.01057 1.87930 1.21478 1.27535 1.94610 1.23616 0.93590 0.85975 0.95801 0.86953 1.23771 0.95515 1.01085 0.97559 1.21600 0.81202 0.93729 0.97401 1.22261 0.98440 0.88513 0.90066 1.86409 1.82729 1.22958 1.46874 1.45530 1.04540 1.65716 1.17052 1.18038 0.84295 0.77613 0.84239 1.90741 1.85196 1.45110 1.22699 1.21145 0.94246 1.00137 0.91859 1.67510 1.25937 1.09609 1.14239 1.23016 0.86544 0.96314 1.00123 1.21772 0.97781 0.99191 0.95770 1.25154 0.90857 0.96112 1.05740 1.86504 1.52622 1.29350 1.67343 0.93736 0.80852 0.85898 0.71729 1.21721 0.97156 0.93386 0.95630 1.22269 0.92382 0.97819 1.01158 1.23545 0.95883 0.99300 0.98360 0.92906 0.88971 0.92807 0.88326 0.88759 0.90175 0.93317 0.75405 0.74588 0.79809 0.86291 0.75233 1.22170 1.20580 0.82115 0.83306 0.90158 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.32 10.71 -148.98 -1.60 -2.91 16 3 C 0.07 -0.01 3.96 31.12 0.12 0.12 16 4 H 0.11 -0.49 7.43 -2.39 -0.02 -0.51 16 5 C -0.14 0.07 7.17 31.12 0.22 0.29 16 6 C 0.15 0.40 0.93 4.13 0.00 0.40 16 7 C 0.09 0.14 6.06 71.98 0.44 0.58 16 8 O -0.58 -1.66 13.34 -148.98 -1.99 -3.65 16 9 N -0.68 -3.48 4.92 -423.08 -2.08 -5.56 16 10 C 0.57 5.12 7.47 86.88 0.65 5.77 16 11 O -0.56 -7.55 14.76 -3.76 -0.06 -7.61 16 12 C 0.06 0.40 6.75 41.91 0.28 0.68 16 13 N -0.46 -1.80 9.55 -184.91 -1.77 -3.56 16 14 C 0.10 -0.08 9.84 84.82 0.83 0.76 16 15 C -0.14 0.26 5.40 -19.69 -0.11 0.15 16 16 C -0.07 0.27 2.83 71.24 0.20 0.47 16 17 O -0.55 1.76 12.78 -148.98 -1.90 -0.14 16 18 Si 0.77 -4.01 29.82 68.60 2.05 -1.96 16 19 C -0.05 0.01 9.76 22.45 0.22 0.23 16 20 C -0.12 -0.44 9.63 22.61 0.22 -0.22 16 21 C -0.13 -0.43 6.69 31.12 0.21 -0.22 16 22 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.09 -0.23 8.10 -2.39 -0.02 -0.25 16 27 H 0.08 -0.30 7.37 -2.39 -0.02 -0.32 16 28 H 0.05 0.26 7.16 -2.39 -0.02 0.24 16 29 H 0.40 -1.97 9.12 -74.06 -0.68 -2.65 16 30 H 0.42 1.39 8.04 -92.70 -0.75 0.65 16 31 H 0.19 -1.14 4.89 -2.91 -0.01 -1.15 16 32 H 0.12 -0.42 7.96 -2.39 -0.02 -0.44 16 33 H 0.40 -4.33 8.70 -74.06 -0.64 -4.98 16 34 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 35 H -0.28 0.17 7.11 99.48 0.71 0.88 16 36 H 0.16 -0.54 8.06 -2.91 -0.02 -0.56 16 37 H 0.15 0.55 7.64 -2.91 -0.02 0.53 16 38 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 Total: 0.00 -20.15 330.73 -3.74 -23.89 By element: Atomic # 1 Polarization: -7.76 SS G_CDS: -0.92 Total: -8.68 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.52 Total: 10.19 kcal Atomic # 7 Polarization: -5.28 SS G_CDS: -3.85 Total: -9.12 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -5.54 Total: -14.32 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.05 Total: -1.96 kcal Total: -20.15 -3.74 -23.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_13287726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.539 kcal (2) G-P(sol) polarization free energy of solvation -20.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds