Wall clock time and date at job start Sun Mar 7 2021 09:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00109 * 2 1 4 4 H 1.09001 * 112.84968 * 341.20014 * 3 2 1 5 5 C 1.53785 * 113.61279 * 112.50313 * 3 2 1 6 6 C 1.53780 * 87.07779 * 139.98588 * 5 3 2 7 7 C 1.52997 * 113.69360 * 89.13043 * 6 5 3 8 8 O 1.42899 * 109.47080 * 76.35932 * 7 6 5 9 9 N 1.46501 * 113.61176 * 220.01905 * 6 5 3 10 10 C 1.34776 * 120.00216 * 162.34994 * 9 6 5 11 11 O 1.21614 * 119.99526 * 355.01017 * 10 9 6 12 12 C 1.47373 * 120.00101 * 175.01067 * 10 9 6 13 13 C 1.36417 * 127.19088 * 179.97438 * 12 10 9 14 14 C 1.50700 * 125.80437 * 0.02562 * 13 12 10 15 15 O 1.33654 * 108.39810 * 179.73311 * 13 12 10 16 16 C 1.34215 * 110.90754 * 0.26310 * 15 13 12 17 17 C 1.50696 * 125.43747 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47039 * 119.98018 * 17 16 15 19 19 Si 1.86299 * 109.47217 * 359.97438 * 17 16 15 20 20 C 1.34181 * 109.12401 * 0.02562 * 16 15 13 21 21 C 1.53775 * 113.61744 * 210.00336 * 3 2 1 22 22 H 1.09003 * 109.47344 * 59.99586 * 1 2 3 23 23 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47225 * 299.99270 * 1 2 3 25 25 H 1.08997 * 113.61354 * 25.43584 * 5 3 2 26 26 H 1.09003 * 113.61344 * 254.53530 * 5 3 2 27 27 H 1.09001 * 109.47021 * 196.35974 * 7 6 5 28 28 H 1.09003 * 109.46950 * 316.36437 * 7 6 5 29 29 H 0.96696 * 114.00061 * 180.02562 * 8 7 6 30 30 H 0.97007 * 120.00314 * 342.35552 * 9 6 5 31 31 H 1.08997 * 109.47644 * 179.71634 * 14 13 12 32 32 H 1.09005 * 109.46564 * 299.71508 * 14 13 12 33 33 H 1.08994 * 109.47383 * 59.70982 * 14 13 12 34 34 H 1.09003 * 109.47551 * 239.97555 * 17 16 15 35 35 H 0.96695 * 114.00011 * 299.99809 * 18 17 16 36 36 H 1.48504 * 110.00175 * 179.97438 * 19 17 16 37 37 H 1.48502 * 109.99984 * 301.31691 * 19 17 16 38 38 H 1.07999 * 127.02180 * 180.02562 * 20 16 15 39 39 H 1.08998 * 113.61828 * 105.47066 * 21 3 2 40 40 H 1.09003 * 113.61457 * 334.56827 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7535 1.6488 1.3018 6 6 3.8227 2.3182 0.4222 7 6 3.5431 3.7938 0.1305 8 8 3.8595 4.5757 1.2840 9 7 5.1935 2.0786 0.8803 10 6 6.2295 2.2856 0.0435 11 8 6.0232 2.5833 -1.1175 12 6 7.6122 2.1513 0.5354 13 6 8.7618 2.3255 -0.1781 14 6 8.8468 2.6970 -1.6361 15 8 9.8000 2.1171 0.6374 16 6 9.3825 1.8029 1.8737 17 6 10.2776 1.5037 3.0485 18 8 10.0195 2.4419 4.0950 19 14 12.0595 1.6361 2.5212 20 6 8.0409 1.7978 1.8965 21 6 3.3755 1.3720 -0.7045 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.1167 0.7740 1.8410 26 1 2.2140 2.3476 1.9413 27 1 4.1564 4.1207 -0.7093 28 1 2.4894 3.9219 -0.1174 29 1 3.7059 5.5236 1.1709 30 1 5.3555 1.7710 1.7859 31 1 9.8933 2.7707 -1.9319 32 1 8.3528 1.9321 -2.2353 33 1 8.3557 3.6569 -1.7957 34 1 10.0794 0.4942 3.4086 35 1 10.1753 3.3629 3.8449 36 1 12.9526 1.3439 3.6711 37 1 12.3326 0.6877 1.4116 38 1 7.4058 1.5833 2.7433 39 1 3.3384 1.8472 -1.6848 40 1 3.9088 0.4214 -0.7139 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341582_13308374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:22 Heat of formation + Delta-G solvation = -109.707470 kcal Electronic energy + Delta-G solvation = -24929.995706 eV Core-core repulsion = 21100.763186 eV Total energy + Delta-G solvation = -3829.232520 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68339 -41.61023 -39.54053 -38.07906 -37.92751 -36.64074 -34.45251 -33.68093 -32.97813 -29.47606 -28.64443 -27.32633 -26.83192 -25.97755 -24.68753 -23.42499 -22.02426 -20.58264 -19.94412 -18.92750 -18.55138 -18.04463 -17.82447 -17.61113 -16.92854 -16.60898 -16.26592 -16.03697 -15.98253 -15.74584 -15.65720 -15.13837 -14.87297 -14.50780 -14.18668 -14.13250 -13.92244 -13.81705 -13.69828 -13.43445 -13.07526 -12.87739 -12.80175 -12.69716 -12.46588 -12.13598 -11.89585 -11.71989 -11.19915 -10.82142 -10.74705 -10.55005 -10.50880 -10.01089 -9.49552 -5.06249 0.36869 0.90213 1.13528 1.43870 1.76976 1.90971 2.14714 2.44629 2.84730 2.96926 3.18034 3.28342 3.41786 3.54676 3.69437 3.81086 3.83156 3.94094 4.13601 4.20043 4.25720 4.30564 4.38856 4.42529 4.46705 4.58098 4.61264 4.64738 4.69625 4.73027 4.75327 4.80737 4.92825 5.00208 5.05238 5.13812 5.26341 5.56953 5.96525 6.19857 6.36615 6.59450 6.61583 7.33872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.062 3.938 4 H 0.092 0.908 5 C -0.150 4.150 6 C 0.159 3.841 7 C 0.084 3.916 8 O -0.566 6.566 9 N -0.701 5.701 10 C 0.597 3.403 11 O -0.539 6.539 12 C -0.251 4.251 13 C 0.092 3.908 14 C -0.076 4.076 15 O -0.168 6.168 16 C -0.058 4.058 17 C -0.027 4.027 18 O -0.530 6.530 19 Si 0.703 3.297 20 C -0.146 4.146 21 C -0.124 4.124 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.382 0.618 30 H 0.403 0.597 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.384 0.616 36 H -0.247 1.247 37 H -0.253 1.253 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 3.004 0.089 3.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.003 3.997 4 H 0.110 0.890 5 C -0.188 4.188 6 C 0.073 3.927 7 C 0.005 3.995 8 O -0.371 6.371 9 N -0.352 5.352 10 C 0.385 3.615 11 O -0.418 6.418 12 C -0.255 4.255 13 C 0.039 3.961 14 C -0.132 4.132 15 O -0.065 6.065 16 C -0.106 4.106 17 C -0.138 4.138 18 O -0.336 6.336 19 Si 0.603 3.397 20 C -0.166 4.166 21 C -0.163 4.163 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.238 0.762 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.232 0.768 36 H -0.171 1.171 37 H -0.177 1.177 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.103 1.524 -0.318 1.560 hybrid contribution -1.131 0.254 0.466 1.250 sum -1.234 1.778 0.148 2.170 Atomic orbital electron populations 1.22840 0.80769 1.03126 1.00114 1.87963 1.19978 1.26713 1.94509 1.23608 0.94009 0.85836 0.96234 0.89001 1.23794 0.96295 1.01045 0.97665 1.21304 0.81368 0.93035 0.97040 1.22237 0.99187 0.89444 0.88661 1.86451 1.90292 1.22494 1.37910 1.45508 1.04689 1.68699 1.16255 1.17125 0.83244 0.76058 0.85024 1.90765 1.85609 1.48483 1.16912 1.21142 0.93812 1.15881 0.94684 1.22884 0.83673 0.96118 0.93454 1.20538 1.03966 1.04044 0.84665 1.83670 1.35828 1.68059 1.18962 1.22600 0.94874 1.07883 0.85266 1.24403 1.08726 0.95949 0.84719 1.86558 1.91668 1.19818 1.35539 0.94196 0.73925 0.91008 0.80563 1.22589 0.94055 1.03571 0.96381 1.23515 0.94509 0.99978 0.98280 0.93795 0.89418 0.93841 0.88268 0.89809 0.91734 0.92580 0.77103 0.76198 0.90212 0.88410 0.88322 0.85037 0.76790 1.17095 1.17703 0.82503 0.89732 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.37 -0.76 10.71 -35.23 -0.38 -1.14 16 3 C 0.06 0.02 3.96 -25.92 -0.10 -0.08 16 4 H 0.09 -0.12 7.34 -51.93 -0.38 -0.50 16 5 C -0.15 -0.01 7.22 -25.92 -0.19 -0.19 16 6 C 0.16 0.15 0.85 -131.01 -0.11 0.04 16 7 C 0.08 0.04 6.20 37.16 0.23 0.27 16 8 O -0.57 -0.40 13.53 -35.23 -0.48 -0.87 16 9 N -0.70 -1.06 5.12 -47.93 -0.25 -1.31 16 10 C 0.60 2.00 7.47 -12.54 -0.09 1.90 16 11 O -0.54 -2.80 14.07 5.27 0.07 -2.73 16 12 C -0.25 -0.65 6.31 -103.28 -0.65 -1.30 16 13 C 0.09 0.18 7.37 -34.96 -0.26 -0.07 16 14 C -0.08 0.00 9.14 36.01 0.33 0.33 16 15 O -0.17 -0.27 8.89 7.65 0.07 -0.20 16 16 C -0.06 -0.05 6.20 -35.74 -0.22 -0.27 16 17 C -0.03 0.02 2.97 36.00 0.11 0.12 16 18 O -0.53 0.29 12.86 -35.23 -0.45 -0.16 16 19 Si 0.70 -0.69 32.09 -169.99 -5.45 -6.14 16 20 C -0.15 -0.19 10.46 -37.45 -0.39 -0.58 16 21 C -0.12 -0.17 6.40 -25.92 -0.17 -0.33 16 22 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 25 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 27 H 0.06 0.12 7.21 -51.93 -0.37 -0.26 16 28 H 0.06 -0.08 7.32 -51.93 -0.38 -0.46 16 29 H 0.38 -1.21 9.12 45.56 0.42 -0.79 16 30 H 0.40 0.05 7.89 -40.82 -0.32 -0.27 16 31 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 32 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 33 H 0.10 0.00 8.07 -51.93 -0.42 -0.42 16 34 H 0.13 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.38 -1.60 8.70 45.56 0.40 -1.21 16 36 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 37 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 38 H 0.16 -0.05 7.75 -52.49 -0.41 -0.45 16 39 H 0.08 0.12 8.10 -51.93 -0.42 -0.30 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 341.40 15.07 5.14 5.14 Total: 0.00 -8.23 341.40 -7.02 -15.26 By element: Atomic # 1 Polarization: -3.87 SS G_CDS: -4.88 Total: -8.75 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.42 Total: 0.90 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -0.25 Total: -1.31 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -1.17 Total: -5.10 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.45 Total: -6.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -8.23 -7.02 -15.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_13308374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.451 kcal (2) G-P(sol) polarization free energy of solvation -8.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds