Wall clock time and date at job start Sun Mar 7 2021 09:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00109 * 2 1 4 4 H 1.09001 * 112.84968 * 341.20014 * 3 2 1 5 5 C 1.53785 * 113.61279 * 112.50313 * 3 2 1 6 6 C 1.53780 * 87.07779 * 139.98588 * 5 3 2 7 7 C 1.52997 * 113.69360 * 89.13043 * 6 5 3 8 8 O 1.42899 * 109.47080 * 76.35932 * 7 6 5 9 9 N 1.46501 * 113.61176 * 220.01905 * 6 5 3 10 10 C 1.34776 * 120.00216 * 162.34994 * 9 6 5 11 11 O 1.21614 * 119.99526 * 355.01017 * 10 9 6 12 12 C 1.47373 * 120.00101 * 175.01067 * 10 9 6 13 13 C 1.36417 * 127.19088 * 179.97438 * 12 10 9 14 14 C 1.50700 * 125.80437 * 0.02562 * 13 12 10 15 15 O 1.33654 * 108.39810 * 179.73311 * 13 12 10 16 16 C 1.34215 * 110.90754 * 0.26310 * 15 13 12 17 17 C 1.50696 * 125.43747 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47039 * 119.98018 * 17 16 15 19 19 Si 1.86299 * 109.47217 * 359.97438 * 17 16 15 20 20 C 1.34181 * 109.12401 * 0.02562 * 16 15 13 21 21 C 1.53775 * 113.61744 * 210.00336 * 3 2 1 22 22 H 1.09003 * 109.47344 * 59.99586 * 1 2 3 23 23 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47225 * 299.99270 * 1 2 3 25 25 H 1.08997 * 113.61354 * 25.43584 * 5 3 2 26 26 H 1.09003 * 113.61344 * 254.53530 * 5 3 2 27 27 H 1.09001 * 109.47021 * 196.35974 * 7 6 5 28 28 H 1.09003 * 109.46950 * 316.36437 * 7 6 5 29 29 H 0.96696 * 114.00061 * 180.02562 * 8 7 6 30 30 H 0.97007 * 120.00314 * 342.35552 * 9 6 5 31 31 H 1.08997 * 109.47644 * 179.71634 * 14 13 12 32 32 H 1.09005 * 109.46564 * 299.71508 * 14 13 12 33 33 H 1.08994 * 109.47383 * 59.70982 * 14 13 12 34 34 H 1.09003 * 109.47551 * 239.97555 * 17 16 15 35 35 H 0.96695 * 114.00011 * 299.99809 * 18 17 16 36 36 H 1.48504 * 110.00175 * 179.97438 * 19 17 16 37 37 H 1.48502 * 109.99984 * 301.31691 * 19 17 16 38 38 H 1.07999 * 127.02180 * 180.02562 * 20 16 15 39 39 H 1.08998 * 113.61828 * 105.47066 * 21 3 2 40 40 H 1.09003 * 113.61457 * 334.56827 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7535 1.6488 1.3018 6 6 3.8227 2.3182 0.4222 7 6 3.5431 3.7938 0.1305 8 8 3.8595 4.5757 1.2840 9 7 5.1935 2.0786 0.8803 10 6 6.2295 2.2856 0.0435 11 8 6.0232 2.5833 -1.1175 12 6 7.6122 2.1513 0.5354 13 6 8.7618 2.3255 -0.1781 14 6 8.8468 2.6970 -1.6361 15 8 9.8000 2.1171 0.6374 16 6 9.3825 1.8029 1.8737 17 6 10.2776 1.5037 3.0485 18 8 10.0195 2.4419 4.0950 19 14 12.0595 1.6361 2.5212 20 6 8.0409 1.7978 1.8965 21 6 3.3755 1.3720 -0.7045 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.1167 0.7740 1.8410 26 1 2.2140 2.3476 1.9413 27 1 4.1564 4.1207 -0.7093 28 1 2.4894 3.9219 -0.1174 29 1 3.7059 5.5236 1.1709 30 1 5.3555 1.7710 1.7859 31 1 9.8933 2.7707 -1.9319 32 1 8.3528 1.9321 -2.2353 33 1 8.3557 3.6569 -1.7957 34 1 10.0794 0.4942 3.4086 35 1 10.1753 3.3629 3.8449 36 1 12.9526 1.3439 3.6711 37 1 12.3326 0.6877 1.4116 38 1 7.4058 1.5833 2.7433 39 1 3.3384 1.8472 -1.6848 40 1 3.9088 0.4214 -0.7139 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_13308374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:21 Heat of formation + Delta-G solvation = -113.391313 kcal Electronic energy + Delta-G solvation = -24930.155449 eV Core-core repulsion = 21100.763186 eV Total energy + Delta-G solvation = -3829.392264 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.77952 -41.69738 -39.69833 -38.04746 -37.95889 -36.67828 -34.61431 -33.76916 -33.03562 -29.49276 -28.64993 -27.30944 -26.87820 -26.04916 -24.74915 -23.49168 -22.10475 -20.73089 -20.01217 -18.96078 -18.57629 -18.07002 -17.87323 -17.69781 -16.96743 -16.69708 -16.33736 -16.07084 -16.01324 -15.78074 -15.68733 -15.18890 -14.98631 -14.61139 -14.24621 -14.18584 -13.97868 -13.84009 -13.69840 -13.51147 -13.10908 -12.87647 -12.77661 -12.69806 -12.47583 -12.25299 -11.91668 -11.75967 -11.30367 -10.94063 -10.81256 -10.59798 -10.53194 -10.15629 -9.58735 -5.01027 0.22871 0.81576 1.17107 1.39510 1.75417 1.90378 2.05218 2.25891 2.84925 2.97222 3.21100 3.25268 3.46588 3.53477 3.65127 3.72951 3.77804 3.96202 4.09297 4.17475 4.30163 4.35059 4.45297 4.46984 4.53676 4.55552 4.59989 4.62762 4.64638 4.65119 4.76379 4.83622 4.89486 4.90676 5.01610 5.11699 5.19696 5.46118 5.87954 6.21899 6.47788 6.61181 6.77875 7.15964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.066 3.934 4 H 0.112 0.888 5 C -0.141 4.141 6 C 0.154 3.846 7 C 0.087 3.913 8 O -0.580 6.580 9 N -0.695 5.695 10 C 0.592 3.408 11 O -0.564 6.564 12 C -0.269 4.269 13 C 0.085 3.915 14 C -0.074 4.074 15 O -0.170 6.170 16 C -0.059 4.059 17 C -0.026 4.026 18 O -0.540 6.540 19 Si 0.780 3.220 20 C -0.151 4.151 21 C -0.128 4.128 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.397 0.603 30 H 0.409 0.591 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.400 0.600 36 H -0.278 1.278 37 H -0.294 1.294 38 H 0.170 0.830 39 H 0.079 0.921 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 3.626 0.776 4.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.008 3.992 4 H 0.130 0.870 5 C -0.179 4.179 6 C 0.067 3.933 7 C 0.008 3.992 8 O -0.388 6.388 9 N -0.346 5.346 10 C 0.381 3.619 11 O -0.445 6.445 12 C -0.274 4.274 13 C 0.031 3.969 14 C -0.130 4.130 15 O -0.068 6.068 16 C -0.107 4.107 17 C -0.136 4.136 18 O -0.348 6.348 19 Si 0.684 3.316 20 C -0.170 4.170 21 C -0.166 4.166 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.247 0.753 30 H 0.245 0.755 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.251 0.749 36 H -0.204 1.204 37 H -0.221 1.221 38 H 0.188 0.812 39 H 0.098 0.902 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.663 2.181 0.393 2.313 hybrid contribution -0.956 0.039 0.259 0.991 sum -1.619 2.219 0.652 2.823 Atomic orbital electron populations 1.22992 0.79523 1.03790 1.01066 1.87929 1.21489 1.27690 1.94632 1.23677 0.93729 0.85864 0.95970 0.87042 1.23721 0.95770 1.00882 0.97526 1.21451 0.81196 0.93544 0.97103 1.22185 1.00079 0.88896 0.87999 1.86404 1.90510 1.23933 1.37966 1.45506 1.04752 1.67975 1.16324 1.17305 0.83860 0.75827 0.84890 1.90741 1.86024 1.49856 1.17905 1.21268 0.93697 1.16795 0.95615 1.23232 0.83678 0.95800 0.94166 1.20569 1.05164 1.03649 0.83597 1.83673 1.35795 1.68046 1.19243 1.22905 0.95097 1.07390 0.85324 1.24496 1.08507 0.96357 0.84249 1.86530 1.91669 1.21060 1.35526 0.93239 0.72052 0.89485 0.76818 1.22764 0.94438 1.03586 0.96237 1.23462 0.95493 0.99211 0.98449 0.92867 0.89024 0.92822 0.88636 0.88880 0.93491 0.90390 0.75273 0.75486 0.88269 0.88964 0.88447 0.84578 0.74949 1.20448 1.22132 0.81209 0.90220 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.65 10.71 -148.98 -1.60 -3.24 16 3 C 0.07 0.03 3.96 31.12 0.12 0.16 16 4 H 0.11 -0.42 7.34 -2.39 -0.02 -0.44 16 5 C -0.14 0.03 7.22 31.12 0.22 0.25 16 6 C 0.15 0.35 0.85 4.13 0.00 0.35 16 7 C 0.09 0.07 6.20 71.98 0.45 0.52 16 8 O -0.58 -0.55 13.53 -148.98 -2.02 -2.57 16 9 N -0.70 -2.66 5.12 -423.81 -2.17 -4.82 16 10 C 0.59 4.69 7.47 86.65 0.65 5.33 16 11 O -0.56 -6.81 14.07 -4.08 -0.06 -6.87 16 12 C -0.27 -1.62 6.31 -18.99 -0.12 -1.74 16 13 C 0.08 0.40 7.37 25.26 0.19 0.58 16 14 C -0.07 -0.05 9.14 71.24 0.65 0.60 16 15 O -0.17 -0.58 8.89 4.45 0.04 -0.54 16 16 C -0.06 -0.10 6.20 24.76 0.15 0.05 16 17 C -0.03 0.04 2.97 71.23 0.21 0.25 16 18 O -0.54 1.09 12.86 -148.98 -1.92 -0.83 16 19 Si 0.78 -1.47 32.09 68.60 2.20 0.73 16 20 C -0.15 -0.41 10.46 23.65 0.25 -0.16 16 21 C -0.13 -0.47 6.40 31.12 0.20 -0.28 16 22 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 23 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 27 H 0.05 0.21 7.21 -2.39 -0.02 0.19 16 28 H 0.08 -0.30 7.32 -2.39 -0.02 -0.32 16 29 H 0.40 -2.74 9.12 -74.06 -0.68 -3.42 16 30 H 0.41 0.30 7.89 -92.70 -0.73 -0.43 16 31 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.09 0.18 8.09 -2.38 -0.02 0.16 16 33 H 0.10 0.10 8.07 -2.39 -0.02 0.08 16 34 H 0.14 -0.34 7.96 -2.39 -0.02 -0.35 16 35 H 0.40 -3.79 8.70 -74.06 -0.64 -4.43 16 36 H -0.28 -0.92 7.11 99.48 0.71 -0.22 16 37 H -0.29 -1.50 7.11 99.48 0.71 -0.79 16 38 H 0.17 -0.14 7.75 -2.91 -0.02 -0.16 16 39 H 0.08 0.34 8.10 -2.39 -0.02 0.32 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: 0.00 -19.29 341.40 -2.23 -21.53 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: -0.92 Total: -10.50 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 4.20 Total: 7.11 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -2.17 Total: -4.82 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -5.55 Total: -14.04 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: 2.20 Total: 0.73 kcal Total: -19.29 -2.23 -21.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_13308374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.863 kcal (2) G-P(sol) polarization free energy of solvation -19.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds