Wall clock time and date at job start Sun Mar 7 2021 09:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99860 * 2 1 4 4 H 1.09000 * 112.90729 * 18.74965 * 3 2 1 5 5 C 1.53775 * 113.61411 * 149.99936 * 3 2 1 6 6 C 1.53785 * 87.17282 * 139.93934 * 5 3 2 7 7 C 1.53006 * 113.61186 * 89.15742 * 6 5 3 8 8 O 1.42902 * 109.46967 * 178.41084 * 7 6 5 9 9 N 1.46498 * 113.61494 * 220.06102 * 6 5 3 10 10 C 1.34777 * 120.00097 * 296.05228 * 9 6 5 11 11 O 1.21692 * 119.99740 * 5.03877 * 10 9 6 12 12 C 1.46683 * 119.99791 * 185.03679 * 10 9 6 13 13 C 1.37868 * 126.22966 * 180.02562 * 12 10 9 14 14 C 1.50697 * 126.45932 * 359.92058 * 13 12 10 15 15 C 1.39833 * 107.08374 * 179.97438 * 13 12 10 16 16 C 1.35454 * 107.86631 * 359.97438 * 15 13 12 17 17 C 1.50700 * 125.56529 * 180.02562 * 16 15 13 18 18 O 1.42897 * 109.46926 * 119.97591 * 17 16 15 19 19 Si 1.86298 * 109.47222 * 359.97438 * 17 16 15 20 20 N 1.35530 * 108.86915 * 359.77191 * 16 15 13 21 21 C 1.53781 * 113.61506 * 247.49863 * 3 2 1 22 22 H 1.09004 * 109.46645 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47280 * 299.99798 * 1 2 3 24 24 H 1.08997 * 109.47421 * 59.99926 * 1 2 3 25 25 H 1.08995 * 113.61935 * 254.53080 * 5 3 2 26 26 H 1.09002 * 113.61665 * 25.35263 * 5 3 2 27 27 H 1.08994 * 109.47011 * 298.41175 * 7 6 5 28 28 H 1.08995 * 109.46803 * 58.41261 * 7 6 5 29 29 H 0.96694 * 114.00249 * 180.02562 * 8 7 6 30 30 H 0.97003 * 119.99655 * 116.05416 * 9 6 5 31 31 H 1.09000 * 109.47100 * 90.00356 * 14 13 12 32 32 H 1.09000 * 109.47147 * 210.00212 * 14 13 12 33 33 H 1.09002 * 109.47123 * 330.00541 * 14 13 12 34 34 H 1.08000 * 126.06872 * 179.97438 * 15 13 12 35 35 H 1.09002 * 109.47235 * 239.98121 * 17 16 15 36 36 H 0.96696 * 114.00594 * 299.99939 * 18 17 16 37 37 H 1.48501 * 110.00087 * 58.67974 * 19 17 16 38 38 H 1.48501 * 110.00062 * 180.02562 * 19 17 16 39 39 H 0.97003 * 125.67871 * 180.26485 * 20 16 15 40 40 H 1.09000 * 113.61498 * 334.56781 * 21 3 2 41 41 H 1.09004 * 113.61311 * 105.46907 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 0.3227 5 6 3.3755 1.3720 0.7045 6 6 3.8252 2.3176 -0.4218 7 6 3.5460 3.7935 -0.1309 8 8 4.0300 4.5920 -1.2127 9 7 5.1959 2.0757 -0.8788 10 6 6.2304 2.2633 -0.0355 11 8 6.0220 2.5443 1.1300 12 6 7.6074 2.1287 -0.5227 13 6 8.7553 2.2911 0.2235 14 6 8.8297 2.6407 1.6875 15 6 9.8374 2.0715 -0.6344 16 6 9.3428 1.7846 -1.8623 17 6 10.1637 1.4798 -3.0888 18 8 9.8431 0.1706 -3.5633 19 14 11.9748 1.5584 -2.6591 20 7 7.9889 1.8108 -1.8065 21 6 2.7534 1.6490 -1.3018 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 3.3384 1.8471 1.6847 26 1 3.9082 0.4211 0.7150 27 1 2.4725 3.9451 -0.0194 28 1 4.0517 4.0843 0.7898 29 1 3.8868 5.5411 -1.0958 30 1 5.3590 1.7806 -1.7883 31 1 8.8335 1.7257 2.2798 32 1 9.7436 3.2025 1.8809 33 1 7.9659 3.2468 1.9607 34 1 10.8823 2.1217 -0.3657 35 1 9.9425 2.2121 -3.8653 36 1 10.0150 -0.5330 -2.9228 37 1 12.2831 0.5870 -1.5790 38 1 12.7952 1.2603 -3.8604 39 1 7.3886 1.6366 -2.5483 40 1 3.1166 0.7741 -1.8410 41 1 2.2139 2.3478 -1.9412 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_13940406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:45 Heat of formation + Delta-G solvation = -89.239145 kcal Electronic energy + Delta-G solvation = -24892.801176 eV Core-core repulsion = 21162.174891 eV Total energy + Delta-G solvation = -3730.626285 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64217 -41.56373 -39.59148 -38.05128 -37.80934 -36.71462 -34.59656 -33.38703 -31.59835 -28.81134 -28.17742 -27.32586 -26.99210 -26.80716 -24.24715 -22.41996 -21.59395 -20.54977 -20.07406 -19.53890 -18.63759 -18.25495 -17.92184 -16.93079 -16.74238 -16.58845 -16.24213 -16.03613 -15.91863 -15.45006 -15.38885 -15.30818 -14.80983 -14.54375 -14.28271 -13.90112 -13.70209 -13.61358 -13.56687 -13.53934 -13.11068 -12.98462 -12.73279 -12.50166 -12.27321 -11.93607 -11.86719 -11.80612 -11.26808 -10.92325 -10.73193 -10.55643 -10.26422 -9.83042 -9.19815 -4.84040 0.31686 1.22133 1.53936 1.69743 1.87834 1.94980 2.21504 2.27482 2.83107 2.95158 3.18908 3.33080 3.50143 3.56356 3.62458 3.79041 3.93902 4.11179 4.16953 4.24567 4.34207 4.44250 4.48866 4.52025 4.53888 4.59075 4.61972 4.71911 4.80449 4.81007 4.86107 4.87817 4.90276 4.97343 5.15821 5.30840 5.41359 5.63026 5.85870 6.19881 6.29199 6.38426 6.46758 6.74577 7.08473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.066 3.934 4 H 0.113 0.887 5 C -0.128 4.128 6 C 0.154 3.846 7 C 0.087 3.913 8 O -0.580 6.580 9 N -0.700 5.700 10 C 0.591 3.409 11 O -0.553 6.553 12 C -0.070 4.070 13 C -0.086 4.086 14 C -0.088 4.088 15 C -0.207 4.207 16 C 0.034 3.966 17 C -0.065 4.065 18 O -0.549 6.549 19 Si 0.797 3.203 20 N -0.515 5.515 21 C -0.141 4.141 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.398 0.602 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.389 0.611 37 H -0.282 1.282 38 H -0.297 1.297 39 H 0.425 0.575 40 H 0.096 0.904 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 2.965 -2.179 4.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.008 3.992 4 H 0.130 0.870 5 C -0.167 4.167 6 C 0.067 3.933 7 C 0.008 3.992 8 O -0.388 6.388 9 N -0.350 5.350 10 C 0.380 3.620 11 O -0.432 6.432 12 C -0.183 4.183 13 C -0.095 4.095 14 C -0.145 4.145 15 C -0.231 4.231 16 C -0.085 4.085 17 C -0.173 4.173 18 O -0.357 6.357 19 Si 0.700 3.300 20 N -0.112 5.112 21 C -0.179 4.179 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.247 0.753 30 H 0.240 0.760 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.185 0.815 35 H 0.151 0.849 36 H 0.239 0.761 37 H -0.208 1.208 38 H -0.225 1.225 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.279 2.304 -2.184 3.422 hybrid contribution -1.142 -0.710 -0.363 1.393 sum -2.421 1.594 -2.547 3.859 Atomic orbital electron populations 1.22994 0.79487 1.03802 1.01093 1.87931 1.21518 1.27657 1.94629 1.23667 0.93707 0.85924 0.95943 0.86969 1.23472 0.95555 0.99218 0.98459 1.21500 0.81066 0.93546 0.97148 1.22213 0.98936 0.88560 0.89469 1.86386 1.84716 1.23218 1.44508 1.45534 1.05173 1.68943 1.15373 1.17155 0.83216 0.76269 0.85323 1.90782 1.84977 1.49837 1.17563 1.20230 0.93687 1.18286 0.86111 1.20165 0.91012 1.01553 0.96773 1.20324 1.03019 1.01551 0.89655 1.20826 0.99784 1.10865 0.91647 1.21240 0.83145 1.06357 0.97744 1.25124 1.10147 0.86742 0.95315 1.86571 1.87717 1.16060 1.45339 0.93274 0.70051 0.89737 0.76958 1.41841 1.07068 1.52861 1.09444 1.23783 0.95646 1.00960 0.97500 0.89038 0.92881 0.92748 0.90345 0.90128 0.90198 0.93605 0.75256 0.76015 0.91752 0.89959 0.91922 0.81503 0.84883 0.76126 1.20825 1.22453 0.73564 0.88585 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.47 10.71 -148.98 -1.60 -3.06 16 3 C 0.07 -0.01 3.96 31.12 0.12 0.12 16 4 H 0.11 -0.49 7.41 -2.39 -0.02 -0.51 16 5 C -0.13 -0.45 6.33 31.12 0.20 -0.26 16 6 C 0.15 0.24 0.92 4.19 0.00 0.24 16 7 C 0.09 0.03 6.19 71.98 0.45 0.48 16 8 O -0.58 -0.33 13.39 -148.98 -1.99 -2.33 16 9 N -0.70 -1.82 4.97 -424.17 -2.11 -3.93 16 10 C 0.59 4.66 7.45 86.45 0.64 5.30 16 11 O -0.55 -7.41 13.36 -4.32 -0.06 -7.46 16 12 C -0.07 -0.41 7.05 40.35 0.28 -0.12 16 13 C -0.09 -0.52 6.21 -19.57 -0.12 -0.64 16 14 C -0.09 -0.48 9.83 71.24 0.70 0.22 16 15 C -0.21 -0.31 9.27 22.01 0.20 -0.11 16 16 C 0.03 -0.01 6.47 41.34 0.27 0.26 16 17 C -0.06 0.20 3.08 71.24 0.22 0.42 16 18 O -0.55 0.23 12.88 -148.98 -1.92 -1.69 16 19 Si 0.80 -3.11 30.54 68.60 2.10 -1.02 16 20 N -0.52 -0.27 5.99 -171.93 -1.03 -1.30 16 21 C -0.14 0.19 7.19 31.18 0.22 0.42 16 22 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 23 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 -0.37 7.36 -2.39 -0.02 -0.38 16 28 H 0.05 0.19 7.47 -2.39 -0.02 0.18 16 29 H 0.40 -2.76 9.12 -74.06 -0.68 -3.44 16 30 H 0.40 -0.62 7.85 -92.71 -0.73 -1.35 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.06 0.58 6.49 -2.39 -0.02 0.57 16 34 H 0.17 -0.50 6.17 -2.91 -0.02 -0.52 16 35 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 36 H 0.39 -1.94 8.70 -74.06 -0.64 -2.58 16 37 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 38 H -0.30 -0.93 7.11 99.48 0.71 -0.23 16 39 H 0.43 -1.57 8.20 -92.71 -0.76 -2.33 16 40 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.09 -0.33 8.10 -2.38 -0.02 -0.35 16 Total: 0.00 -20.18 340.80 -3.86 -24.04 By element: Atomic # 1 Polarization: -9.08 SS G_CDS: -1.67 Total: -10.76 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.42 Total: 7.50 kcal Atomic # 7 Polarization: -2.08 SS G_CDS: -3.14 Total: -5.22 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -5.57 Total: -14.54 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.10 Total: -1.02 kcal Total: -20.18 -3.86 -24.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_13940406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.196 kcal (2) G-P(sol) polarization free energy of solvation -20.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds