Wall clock time and date at job start Sun Mar 7 2021 09:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99995 * 2 1 4 4 H 1.08997 * 112.84654 * 341.19800 * 3 2 1 5 5 C 1.53781 * 113.61052 * 112.50385 * 3 2 1 6 6 C 1.53777 * 87.07881 * 139.98251 * 5 3 2 7 7 C 1.53001 * 113.61799 * 89.11647 * 6 5 3 8 8 O 1.42892 * 109.46931 * 82.73133 * 7 6 5 9 9 N 1.46507 * 113.68995 * 220.00612 * 6 5 3 10 10 C 1.34771 * 120.00152 * 173.16329 * 9 6 5 11 11 O 1.21282 * 120.00162 * 5.52843 * 10 9 6 12 12 C 1.50707 * 120.00083 * 185.52933 * 10 9 6 13 13 C 1.53038 * 109.32868 * 180.86524 * 12 10 9 14 14 C 1.53568 * 108.54697 * 190.15848 * 13 12 10 15 15 N 1.47032 * 107.64366 * 60.97444 * 14 13 12 16 16 C 1.38920 * 118.88503 * 316.31785 * 15 14 13 17 17 C 1.31116 * 121.84626 * 13.30521 * 16 15 14 18 18 C 1.50701 * 118.54586 * 179.61502 * 17 16 15 19 19 O 1.42901 * 109.47584 * 120.01574 * 18 17 16 20 20 Si 1.86304 * 109.47143 * 0.02562 * 18 17 16 21 21 C 1.53780 * 87.08436 * 334.56483 * 6 5 3 22 22 H 1.08999 * 109.47535 * 300.00036 * 1 2 3 23 23 H 1.09001 * 109.47317 * 59.99987 * 1 2 3 24 24 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.08998 * 113.61775 * 25.42937 * 5 3 2 26 26 H 1.09001 * 113.61283 * 254.52958 * 5 3 2 27 27 H 1.08999 * 109.46555 * 322.73281 * 7 6 5 28 28 H 1.09001 * 109.47045 * 202.73037 * 7 6 5 29 29 H 0.96708 * 113.99646 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99589 * 353.16936 * 9 6 5 31 31 H 1.09001 * 109.32172 * 300.34870 * 12 10 9 32 32 H 1.08998 * 109.62000 * 309.89122 * 13 12 10 33 33 H 1.08994 * 109.62378 * 70.44572 * 13 12 10 34 34 H 1.08991 * 109.83292 * 301.43132 * 14 13 12 35 35 H 1.08996 * 109.86700 * 180.52911 * 14 13 12 36 36 H 0.96998 * 120.55751 * 136.35228 * 15 14 13 37 37 H 1.07995 * 119.07811 * 193.31920 * 16 15 14 38 38 H 1.09004 * 109.47174 * 240.01834 * 18 17 16 39 39 H 0.96698 * 114.00096 * 179.97438 * 19 18 17 40 40 H 1.48503 * 109.99749 * 60.00300 * 20 18 17 41 41 H 1.48504 * 110.00039 * 181.31865 * 20 18 17 42 42 H 1.08998 * 113.61560 * 139.98254 * 21 6 5 43 43 H 1.09000 * 113.61622 * 270.80412 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 -0.3237 5 6 2.7535 1.6488 1.3018 6 6 3.8227 2.3181 0.4223 7 6 3.5413 3.7936 0.1314 8 8 3.9945 4.5900 1.2278 9 7 5.1942 2.0798 0.8790 10 6 6.2354 2.4895 0.1279 11 8 6.0397 3.1429 -0.8750 12 6 7.6430 2.1359 0.5340 13 6 8.6268 2.7379 -0.4717 14 6 10.0230 2.1618 -0.1941 15 7 9.9478 0.7046 -0.3750 16 6 8.8613 0.0181 0.1525 17 6 7.7879 0.6415 0.5749 18 6 6.6492 -0.1778 1.1256 19 8 6.4014 0.2012 2.4809 20 14 7.0951 -1.9854 1.0581 21 6 3.3756 1.3719 -0.7045 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1166 0.7739 1.8410 26 1 2.2141 2.3476 1.9412 27 1 2.4697 3.9390 -0.0050 28 1 4.0669 4.0916 -0.7759 29 1 3.8475 5.5388 1.1119 30 1 5.3528 1.6270 1.7222 31 1 7.8465 2.5454 1.5235 32 1 8.3186 2.4795 -1.4848 33 1 8.6489 3.8217 -0.3583 34 1 10.3216 2.3925 0.8284 35 1 10.7439 2.5843 -0.8940 36 1 10.6453 0.2304 -0.8541 37 1 8.9020 -1.0592 0.2166 38 1 5.7536 -0.0019 0.5296 39 1 5.6791 -0.2864 2.8999 40 1 8.3146 -2.2382 1.8670 41 1 5.9678 -2.8061 1.5688 42 1 3.3384 1.8471 -1.6848 43 1 3.9098 0.4218 -0.7147 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_15608500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:52 Heat of formation + Delta-G solvation = -98.464283 kcal Electronic energy + Delta-G solvation = -26798.438802 eV Core-core repulsion = 23040.101007 eV Total energy + Delta-G solvation = -3758.337795 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99543 -40.58629 -39.00757 -37.99539 -37.76676 -36.64743 -34.23741 -33.13647 -32.83162 -28.72865 -27.34392 -27.22772 -26.86684 -25.86119 -23.93216 -23.06646 -21.54792 -20.16223 -19.14892 -18.76006 -18.62644 -18.49017 -18.06906 -17.69826 -16.93812 -16.59266 -16.19627 -16.00717 -15.77358 -15.52362 -15.20946 -14.97554 -14.83958 -14.66914 -14.54427 -13.83813 -13.78841 -13.68992 -13.62943 -13.44177 -13.08091 -12.84703 -12.63230 -12.41011 -12.24516 -11.88870 -11.84923 -11.69170 -11.67618 -11.39344 -11.18876 -10.54261 -10.51490 -10.36511 -9.83436 -8.42658 -4.93109 1.21743 1.34989 1.59189 1.79709 1.94399 2.25577 2.64758 2.89411 3.04108 3.28137 3.43491 3.55520 3.63826 3.69660 3.86126 3.96161 4.01861 4.16506 4.26014 4.28826 4.38040 4.41928 4.48417 4.51269 4.54904 4.61335 4.66594 4.68121 4.70540 4.81206 4.85030 4.86075 4.92247 4.95378 5.03033 5.21577 5.28000 5.44615 5.63721 6.22472 6.30571 6.56069 6.69791 6.77173 6.98242 7.37444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.069 3.931 4 H 0.107 0.893 5 C -0.145 4.145 6 C 0.147 3.853 7 C 0.085 3.915 8 O -0.582 6.582 9 N -0.697 5.697 10 C 0.530 3.470 11 O -0.575 6.575 12 C -0.036 4.036 13 C -0.116 4.116 14 C 0.122 3.878 15 N -0.743 5.743 16 C 0.159 3.841 17 C -0.257 4.257 18 C -0.070 4.070 19 O -0.552 6.552 20 Si 0.745 3.255 21 C -0.135 4.135 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.394 0.606 30 H 0.412 0.588 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.416 0.584 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.389 0.611 40 H -0.290 1.290 41 H -0.291 1.291 42 H 0.076 0.924 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -1.556 -1.121 2.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.010 3.990 4 H 0.124 0.876 5 C -0.183 4.183 6 C 0.060 3.940 7 C 0.006 3.994 8 O -0.389 6.389 9 N -0.356 5.356 10 C 0.318 3.682 11 O -0.455 6.455 12 C -0.057 4.057 13 C -0.154 4.154 14 C -0.003 4.003 15 N -0.374 5.374 16 C 0.036 3.964 17 C -0.268 4.268 18 C -0.179 4.179 19 O -0.360 6.360 20 Si 0.651 3.349 21 C -0.174 4.174 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.256 0.744 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.252 0.748 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.239 0.761 40 H -0.217 1.217 41 H -0.219 1.219 42 H 0.095 0.905 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.090 -2.062 -1.205 2.390 hybrid contribution -0.906 0.792 1.104 1.633 sum -0.816 -1.270 -0.101 1.513 Atomic orbital electron populations 1.22985 0.79654 1.03812 1.00925 1.87916 1.21310 1.27411 1.94614 1.23586 0.93698 0.85849 0.95841 0.87554 1.23769 0.95970 1.00926 0.97593 1.21466 0.82313 0.93342 0.96893 1.22267 0.98418 0.89091 0.89583 1.86402 1.85990 1.23048 1.43481 1.46280 1.04061 1.59852 1.25432 1.20720 0.87501 0.77351 0.82632 1.90600 1.86479 1.40325 1.28127 1.19624 0.91439 0.94326 1.00343 1.21676 0.94763 1.00247 0.98758 1.21679 0.96344 0.80319 1.01939 1.44603 1.24046 1.07060 1.61671 1.20485 0.86664 0.96319 0.92891 1.19594 0.97201 0.93340 1.16670 1.24909 0.99732 1.09492 0.83805 1.86488 1.58418 1.64706 1.26390 0.94386 0.77365 0.72964 0.90192 1.23618 0.95661 0.99756 0.98325 0.93073 0.92984 0.88850 0.88306 0.89567 0.91192 0.92922 0.75705 0.74414 0.89644 0.91602 0.90724 0.92078 0.87778 0.74760 0.83510 0.90794 0.76051 1.21711 1.21871 0.90486 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -1.09 10.71 -148.98 -1.60 -2.69 16 3 C 0.07 0.01 3.96 31.12 0.12 0.14 16 4 H 0.11 -0.33 7.39 -2.39 -0.02 -0.34 16 5 C -0.14 -0.03 7.17 31.12 0.22 0.19 16 6 C 0.15 0.52 0.95 4.13 0.00 0.52 16 7 C 0.09 0.34 5.82 71.98 0.42 0.76 16 8 O -0.58 -3.01 13.41 -148.98 -2.00 -5.01 16 9 N -0.70 -3.69 3.30 -420.53 -1.39 -5.08 16 10 C 0.53 4.79 6.57 87.66 0.58 5.37 16 11 O -0.58 -8.34 13.83 -3.04 -0.04 -8.39 16 12 C -0.04 -0.20 2.63 -12.43 -0.03 -0.24 16 13 C -0.12 -0.42 4.92 30.80 0.15 -0.26 16 14 C 0.12 -0.22 7.16 86.47 0.62 0.40 16 15 N -0.74 1.86 5.83 -345.87 -2.02 -0.15 16 16 C 0.16 -0.01 9.63 83.41 0.80 0.79 16 17 C -0.26 -0.77 5.14 -16.76 -0.09 -0.86 16 18 C -0.07 -0.06 1.69 71.24 0.12 0.06 16 19 O -0.55 -0.49 10.38 -148.98 -1.55 -2.03 16 20 Si 0.75 -0.77 29.68 68.60 2.04 1.27 16 21 C -0.13 -0.38 7.23 31.12 0.22 -0.15 16 22 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.09 -0.04 8.10 -2.39 -0.02 -0.06 16 27 H 0.07 -0.07 7.34 -2.39 -0.02 -0.09 16 28 H 0.05 0.44 6.52 -2.39 -0.02 0.42 16 29 H 0.39 -0.98 9.12 -74.05 -0.68 -1.65 16 30 H 0.41 1.51 5.03 -92.70 -0.47 1.04 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.46 7.75 -2.39 -0.02 0.44 16 33 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.42 -3.04 8.96 -92.71 -0.83 -3.88 16 37 H 0.15 -0.58 4.37 -2.91 -0.01 -0.59 16 38 H 0.07 0.08 5.69 -2.39 -0.01 0.06 16 39 H 0.39 -2.35 8.74 -74.06 -0.65 -2.99 16 40 H -0.29 -1.35 7.11 99.48 0.71 -0.64 16 41 H -0.29 -1.16 7.11 99.48 0.71 -0.45 16 42 H 0.08 0.28 8.10 -2.39 -0.02 0.26 16 43 H 0.09 0.34 7.63 -2.39 -0.02 0.33 16 Total: 0.00 -19.41 334.93 -3.69 -23.10 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -1.51 Total: -8.92 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.37 Total: 7.89 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -3.40 Total: -5.23 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -5.18 Total: -18.12 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.04 Total: 1.27 kcal Total: -19.41 -3.69 -23.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_15608500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.361 kcal (2) G-P(sol) polarization free energy of solvation -19.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds