Wall clock time and date at job start Sun Mar 7 2021 09:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99726 * 2 1 4 4 H 1.09000 * 112.85366 * 18.80130 * 3 2 1 5 5 C 1.53779 * 113.61201 * 150.00213 * 3 2 1 6 6 C 1.53775 * 87.08220 * 89.11358 * 5 3 2 7 7 C 1.53005 * 113.61306 * 140.06609 * 6 5 3 8 8 O 1.42904 * 109.47070 * 186.48232 * 7 6 5 9 9 N 1.46499 * 113.61620 * 270.87980 * 6 5 3 10 10 C 1.34776 * 120.00561 * 294.19395 * 9 6 5 11 11 O 1.21282 * 119.99357 * 355.07964 * 10 9 6 12 12 C 1.50699 * 120.00395 * 175.07140 * 10 9 6 13 13 O 1.42897 * 109.46929 * 180.02562 * 12 10 9 14 14 C 1.35902 * 116.99695 * 180.02562 * 13 12 10 15 15 C 1.38710 * 120.05570 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.02879 * 0.03692 * 15 14 13 17 17 O 1.42895 * 109.47307 * 284.98246 * 16 15 14 18 18 Si 1.86295 * 109.47268 * 164.98030 * 16 15 14 19 19 C 1.38170 * 119.94527 * 180.02562 * 15 14 13 20 20 C 1.38241 * 120.05526 * 359.97438 * 19 15 14 21 21 C 1.38290 * 120.11242 * 0.02562 * 20 19 15 22 22 C 1.38123 * 120.05437 * 359.97438 * 21 20 19 23 23 C 1.53777 * 87.17633 * 25.47453 * 6 5 3 24 24 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47287 * 300.00270 * 1 2 3 26 26 H 1.09003 * 109.46925 * 60.00160 * 1 2 3 27 27 H 1.09000 * 113.61535 * 334.56340 * 5 3 2 28 28 H 1.09000 * 113.61158 * 203.66468 * 5 3 2 29 29 H 1.08997 * 109.47125 * 306.48447 * 7 6 5 30 30 H 1.08998 * 109.47184 * 66.48255 * 7 6 5 31 31 H 0.96699 * 113.99569 * 179.97438 * 8 7 6 32 32 H 0.97006 * 119.99922 * 114.18673 * 9 6 5 33 33 H 1.09001 * 109.46600 * 60.00481 * 12 10 9 34 34 H 1.08992 * 109.47212 * 300.00324 * 12 10 9 35 35 H 1.09006 * 109.47122 * 44.98204 * 16 15 14 36 36 H 0.96701 * 114.00351 * 59.99914 * 17 16 15 37 37 H 1.48501 * 110.00221 * 178.68117 * 18 16 15 38 38 H 1.48500 * 110.00223 * 300.00530 * 18 16 15 39 39 H 1.08003 * 119.97329 * 179.97438 * 19 15 14 40 40 H 1.07991 * 119.94424 * 179.74413 * 20 19 15 41 41 H 1.07992 * 119.97544 * 179.97438 * 21 20 19 42 42 H 1.08004 * 120.02896 * 179.97438 * 22 21 20 43 43 H 1.08997 * 113.61543 * 89.06934 * 23 6 5 44 44 H 1.08999 * 113.61455 * 219.97723 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3755 1.3719 0.7045 6 6 4.0061 1.0331 -0.6565 7 6 5.2920 1.8097 -0.9466 8 8 5.7181 1.5431 -2.2843 9 7 4.1437 -0.4054 -0.8977 10 6 4.9801 -1.1393 -0.1373 11 8 5.6849 -0.5958 0.6866 12 6 5.0395 -2.6351 -0.3108 13 8 5.9927 -3.1829 0.6021 14 6 6.1697 -4.5301 0.5746 15 6 7.0789 -5.1290 1.4340 16 6 7.8712 -4.2865 2.4001 17 8 8.9007 -3.5919 1.6933 18 14 8.6389 -5.3832 3.6957 19 6 7.2574 -6.4988 1.4037 20 6 6.5304 -7.2723 0.5182 21 6 5.6233 -6.6777 -0.3397 22 6 5.4412 -5.3087 -0.3133 23 6 2.7549 1.6494 -1.3041 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.5170 0.5958 1.4566 28 1 3.6310 2.3671 1.0685 29 1 5.1057 2.8774 -0.8306 30 1 6.0695 1.4988 -0.2488 31 1 6.5295 2.0039 -2.5378 32 1 3.6327 -0.8297 -1.6047 33 1 5.3373 -2.8708 -1.3325 34 1 4.0575 -3.0634 -0.1105 35 1 7.2099 -3.5652 2.8803 36 1 8.5729 -3.0008 1.0016 37 1 9.4490 -4.5681 4.6362 38 1 7.5787 -6.1113 4.4380 39 1 7.9656 -6.9656 2.0724 40 1 6.6743 -8.3423 0.4932 41 1 5.0568 -7.2840 -1.0308 42 1 4.7330 -4.8447 -0.9837 43 1 2.8410 2.7202 -1.4882 44 1 2.3956 1.0971 -2.1724 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_2989392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:58 Heat of formation + Delta-G solvation = -132.297847 kcal Electronic energy + Delta-G solvation = -28483.493820 eV Core-core repulsion = 24369.517948 eV Total energy + Delta-G solvation = -4113.975872 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98505 -41.38805 -39.82378 -38.48728 -37.85859 -37.49901 -36.60557 -34.25320 -32.74234 -31.28557 -29.76745 -28.57578 -27.34021 -26.90849 -26.67292 -24.13775 -23.19935 -22.61747 -21.72965 -20.42145 -19.40514 -18.54488 -18.31379 -18.24638 -17.70988 -17.43003 -17.14732 -16.83756 -16.69125 -16.59160 -16.07205 -15.77932 -15.56637 -15.49853 -15.37571 -14.87533 -14.81509 -14.59721 -14.21527 -13.82874 -13.73737 -13.50471 -13.37748 -13.30743 -12.77535 -12.74926 -12.56517 -12.23957 -12.21301 -12.09099 -11.98981 -11.58215 -11.32143 -11.26636 -11.14074 -10.67156 -10.58878 -10.09014 -9.96819 -9.26893 -4.95915 0.21881 0.37079 1.33823 1.39090 1.44875 1.57276 1.93049 2.47586 2.67659 2.69008 2.99709 3.41602 3.45333 3.54838 3.58657 3.72285 3.79991 3.87146 3.94994 4.00365 4.07744 4.10528 4.20339 4.30392 4.31159 4.38663 4.47066 4.48410 4.53020 4.57388 4.60543 4.62969 4.65870 4.77895 4.85962 4.93533 4.94482 4.99011 5.23703 5.37440 5.47170 5.50771 5.71771 6.20267 6.22997 6.43379 6.46836 6.75178 7.10333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.064 3.936 4 H 0.098 0.902 5 C -0.143 4.143 6 C 0.153 3.847 7 C 0.075 3.925 8 O -0.581 6.581 9 N -0.676 5.676 10 C 0.518 3.482 11 O -0.564 6.564 12 C 0.042 3.958 13 O -0.317 6.317 14 C 0.116 3.884 15 C -0.165 4.165 16 C -0.089 4.089 17 O -0.548 6.548 18 Si 0.826 3.174 19 C -0.080 4.080 20 C -0.150 4.150 21 C -0.077 4.077 22 C -0.210 4.210 23 C -0.136 4.136 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.394 0.606 32 H 0.415 0.585 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.368 0.632 37 H -0.300 1.300 38 H -0.261 1.261 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.124 0.876 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 -0.891 -5.634 8.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.006 3.994 4 H 0.116 0.884 5 C -0.181 4.181 6 C 0.066 3.934 7 C -0.004 4.004 8 O -0.389 6.389 9 N -0.328 5.328 10 C 0.304 3.696 11 O -0.443 6.443 12 C -0.035 4.035 13 O -0.230 6.230 14 C 0.071 3.929 15 C -0.166 4.166 16 C -0.195 4.195 17 O -0.353 6.353 18 Si 0.727 3.273 19 C -0.098 4.098 20 C -0.168 4.168 21 C -0.095 4.095 22 C -0.229 4.229 23 C -0.174 4.174 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.243 0.757 32 H 0.252 0.748 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.216 0.784 37 H -0.228 1.228 38 H -0.186 1.186 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.367 -1.402 -3.691 6.663 hybrid contribution -1.073 1.919 -0.719 2.313 sum -6.441 0.517 -4.410 7.823 Atomic orbital electron populations 1.22965 0.79519 1.03663 1.00866 1.87858 1.21113 1.26920 1.94593 1.23194 0.94253 0.85820 0.96134 0.88436 1.23601 0.95107 1.03421 0.96013 1.21357 0.94248 0.80467 0.97328 1.22464 0.95576 0.98628 0.83713 1.86389 1.48225 1.74451 1.29790 1.45118 1.44066 1.07522 1.36135 1.20322 0.79495 0.88962 0.80782 1.90715 1.43009 1.73654 1.36876 1.22603 0.94664 0.90844 0.95433 1.86060 1.59037 1.19328 1.58608 1.19078 0.95777 0.81920 0.96106 1.19806 1.00507 0.95338 1.00998 1.25680 0.93553 0.99215 1.01059 1.86632 1.33342 1.61760 1.53607 0.92304 0.80839 0.81382 0.72763 1.21126 0.98787 0.91089 0.98772 1.21477 0.97225 1.01697 0.96417 1.21420 0.96636 0.93756 0.97719 1.21567 1.03673 0.95702 1.01928 1.23784 0.92613 1.02995 0.97957 0.88911 0.93571 0.92690 0.92631 0.86248 0.90564 0.94662 0.75702 0.74791 0.86448 0.86843 0.93272 0.78364 1.22818 1.18635 0.82766 0.82564 0.82723 0.83122 0.85815 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.11 10.85 113.37 1.23 1.12 16 2 O -0.39 -0.16 10.13 -148.98 -1.51 -1.67 16 3 C 0.06 -0.14 4.38 31.21 0.14 0.00 16 4 H 0.10 -0.54 7.87 -2.39 -0.02 -0.56 16 5 C -0.14 -0.23 6.86 31.12 0.21 -0.01 16 6 C 0.15 0.18 0.75 4.13 0.00 0.19 16 7 C 0.08 0.16 6.24 71.98 0.45 0.61 16 8 O -0.58 -1.12 13.54 -148.98 -2.02 -3.14 16 9 N -0.68 -1.14 4.54 -420.55 -1.91 -3.05 16 10 C 0.52 3.58 7.40 87.66 0.65 4.23 16 11 O -0.56 -8.96 14.49 16.00 0.23 -8.73 16 12 C 0.04 0.07 5.22 71.24 0.37 0.44 16 13 O -0.32 -2.77 8.58 -73.40 -0.63 -3.39 16 14 C 0.12 0.75 6.62 22.51 0.15 0.90 16 15 C -0.17 -1.17 5.28 -19.77 -0.10 -1.27 16 16 C -0.09 -0.85 2.33 71.24 0.17 -0.69 16 17 O -0.55 -6.44 12.65 -148.98 -1.89 -8.32 16 18 Si 0.83 4.04 30.17 68.60 2.07 6.11 16 19 C -0.08 -0.16 8.66 22.25 0.19 0.03 16 20 C -0.15 0.18 10.04 22.28 0.22 0.40 16 21 C -0.08 0.13 10.04 22.25 0.22 0.35 16 22 C -0.21 -0.16 9.04 22.37 0.20 0.04 16 23 C -0.14 0.52 7.22 31.21 0.23 0.75 16 24 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.05 -0.36 8.14 -2.39 -0.02 -0.37 16 27 H 0.05 0.47 7.54 -2.39 -0.02 0.45 16 28 H 0.12 -0.25 8.10 -2.39 -0.02 -0.27 16 29 H 0.08 -0.21 8.08 -2.39 -0.02 -0.23 16 30 H 0.04 0.28 6.81 -2.39 -0.02 0.27 16 31 H 0.39 -1.97 9.12 -74.06 -0.68 -2.65 16 32 H 0.42 -1.20 8.66 -92.70 -0.80 -2.01 16 33 H 0.12 -0.45 7.66 -2.39 -0.02 -0.47 16 34 H 0.11 -0.31 7.66 -2.39 -0.02 -0.33 16 35 H 0.05 0.66 7.83 -2.38 -0.02 0.64 16 36 H 0.37 3.77 8.61 -74.06 -0.64 3.13 16 37 H -0.30 -3.57 7.11 99.48 0.71 -2.87 16 38 H -0.26 -1.60 7.11 99.48 0.71 -0.89 16 39 H 0.16 -0.45 5.13 -2.91 -0.01 -0.47 16 40 H 0.16 -1.05 8.06 -2.92 -0.02 -1.07 16 41 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 42 H 0.15 -0.71 6.30 -2.91 -0.02 -0.73 16 43 H 0.12 -0.89 8.06 -2.39 -0.02 -0.91 16 44 H 0.09 -0.35 8.09 -2.39 -0.02 -0.37 16 Total: 0.00 -24.37 365.29 -2.34 -26.71 By element: Atomic # 1 Polarization: -10.57 SS G_CDS: -1.03 Total: -11.59 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.33 Total: 7.08 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -1.91 Total: -3.05 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -5.81 Total: -25.26 kcal Atomic # 14 Polarization: 4.04 SS G_CDS: 2.07 Total: 6.11 kcal Total: -24.37 -2.34 -26.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_2989392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.590 kcal (2) G-P(sol) polarization free energy of solvation -24.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds