Wall clock time and date at job start Sun Mar 7 2021 09:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99713 * 2 1 4 4 H 1.08994 * 112.90706 * 341.25100 * 3 2 1 5 5 C 1.53953 * 113.66585 * 112.55207 * 3 2 1 6 6 C 1.53777 * 87.11463 * 139.88601 * 5 3 2 7 7 C 1.52997 * 113.61458 * 89.18142 * 6 5 3 8 8 O 1.42909 * 109.46841 * 84.03542 * 7 6 5 9 9 N 1.46494 * 113.61859 * 220.09157 * 6 5 3 10 10 C 1.34779 * 120.00460 * 152.90230 * 9 6 5 11 11 O 1.21702 * 119.99726 * 4.94295 * 10 9 6 12 12 C 1.46655 * 120.00533 * 184.94621 * 10 9 6 13 13 C 1.36541 * 125.98796 * 179.71348 * 12 10 9 14 14 C 1.50693 * 126.64620 * 0.03548 * 13 12 10 15 15 C 1.40367 * 106.70468 * 179.91116 * 13 12 10 16 16 C 1.35132 * 107.11760 * 0.35273 * 15 13 12 17 17 C 1.50691 * 125.61613 * 179.78342 * 16 15 13 18 18 O 1.42903 * 109.47410 * 89.97703 * 17 16 15 19 19 C 1.35896 * 117.00348 * 180.02562 * 18 17 16 20 20 C 1.38732 * 120.05558 * 359.71749 * 19 18 17 21 21 C 1.38149 * 119.94693 * 179.74737 * 20 19 18 22 22 C 1.38265 * 120.05100 * 0.51222 * 21 20 19 23 23 C 1.50698 * 119.94422 * 179.74680 * 22 21 20 24 24 O 1.42898 * 109.47355 * 245.02370 * 23 22 21 25 25 Si 1.86306 * 109.46987 * 5.02120 * 23 22 21 26 26 C 1.38264 * 120.11370 * 359.76487 * 22 21 20 27 27 C 1.38140 * 120.05651 * 359.97438 * 26 22 21 28 28 O 1.33936 * 108.76460 * 359.77865 * 16 15 13 29 29 C 1.53783 * 113.61044 * 209.99881 * 3 2 1 30 30 H 1.08994 * 109.47077 * 59.99724 * 1 2 3 31 31 H 1.08996 * 109.46712 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46811 * 299.99712 * 1 2 3 33 33 H 1.09010 * 113.53728 * 25.33259 * 5 3 2 34 34 H 1.08997 * 113.74589 * 254.47201 * 5 3 2 35 35 H 1.09000 * 109.47760 * 204.03220 * 7 6 5 36 36 H 1.08998 * 109.47345 * 324.04124 * 7 6 5 37 37 H 0.96692 * 114.00035 * 180.02562 * 8 7 6 38 38 H 0.96997 * 120.00029 * 332.89840 * 9 6 5 39 39 H 1.09007 * 109.47069 * 90.00497 * 14 13 12 40 40 H 1.09006 * 109.47514 * 209.99937 * 14 13 12 41 41 H 1.09001 * 109.47743 * 330.00335 * 14 13 12 42 42 H 1.08000 * 126.44187 * 180.15706 * 15 13 12 43 43 H 1.09005 * 109.47072 * 209.97449 * 17 16 15 44 44 H 1.08994 * 109.47578 * 329.97154 * 17 16 15 45 45 H 1.08001 * 120.02482 * 0.02562 * 20 19 18 46 46 H 1.07992 * 119.97237 * 180.23644 * 21 20 19 47 47 H 1.09003 * 109.47320 * 125.01685 * 23 22 21 48 48 H 0.96699 * 114.00040 * 179.97438 * 24 23 22 49 49 H 1.48501 * 109.99940 * 178.68069 * 25 23 22 50 50 H 1.48507 * 109.99732 * 299.99934 * 25 23 22 51 51 H 1.08001 * 119.97292 * 179.97438 * 26 22 21 52 52 H 1.07996 * 120.03193 * 179.97438 * 27 26 22 53 53 H 1.09001 * 113.61438 * 105.46888 * 29 3 2 54 54 H 1.09001 * 113.61410 * 334.65492 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7556 1.6501 1.3022 6 6 3.8253 2.3175 0.4218 7 6 3.5462 3.7933 0.1309 8 8 4.0289 4.5918 1.2134 9 7 5.1960 2.0756 0.8788 10 6 6.2141 2.0947 -0.0042 11 8 6.0081 2.4011 -1.1639 12 6 7.5701 1.7462 0.4322 13 6 8.6848 1.7199 -0.3559 14 6 8.7543 2.0416 -1.8265 15 6 9.7538 1.3381 0.4697 16 6 9.2497 1.1428 1.7082 17 6 10.0385 0.7174 2.9197 18 8 10.5246 1.8749 3.6023 19 6 11.2616 1.6653 4.7247 20 6 11.5069 0.3722 5.1634 21 6 12.2607 0.1616 6.3018 22 6 12.7617 1.2385 7.0096 23 6 13.5789 1.0061 8.2542 24 8 12.8795 1.5250 9.3872 25 14 13.8588 -0.8218 8.4810 26 6 12.5138 2.5283 6.5776 27 6 11.7651 2.7441 5.4369 28 8 7.9336 1.3897 1.6816 29 6 3.3756 1.3719 -0.7045 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1177 0.7746 1.8413 34 1 2.2190 2.3496 1.9431 35 1 4.0528 4.0845 -0.7893 36 1 2.4727 3.9448 0.0183 37 1 3.8850 5.5408 1.0968 38 1 5.3710 1.9017 1.8169 39 1 8.9531 3.1054 -1.9567 40 1 9.5552 1.4634 -2.2875 41 1 7.8052 1.7887 -2.2991 42 1 10.7847 1.2194 0.1707 43 1 9.3964 0.1441 3.5884 44 1 10.8804 0.0999 2.6067 45 1 11.1126 -0.4692 4.6129 46 1 12.4551 -0.8449 6.6415 47 1 14.5398 1.5115 8.1576 48 1 13.3478 1.4095 10.2252 49 1 14.6904 -1.0624 9.6875 50 1 12.5561 -1.5224 8.6139 51 1 12.9058 3.3679 7.1325 52 1 11.5714 3.7518 5.1001 53 1 3.3384 1.8470 -1.6848 54 1 3.9082 0.4209 -0.7150 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_4549632.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:18 Heat of formation + Delta-G solvation = -114.707753 kcal Electronic energy + Delta-G solvation = -37746.930811 eV Core-core repulsion = 32619.281852 eV Total energy + Delta-G solvation = -5127.648960 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.181 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.94782 -41.77689 -41.27039 -39.80275 -39.16005 -38.05154 -37.38099 -36.73990 -35.39266 -34.32399 -33.16987 -32.05371 -31.62135 -29.13764 -28.81047 -27.96119 -27.30205 -26.91545 -26.17504 -24.59235 -23.89473 -22.75161 -22.45334 -22.09473 -20.82939 -20.14286 -19.46933 -19.32806 -18.65415 -18.54717 -18.03223 -17.73096 -17.47130 -17.01790 -16.86047 -16.78732 -16.50989 -16.30159 -16.06047 -15.90348 -15.68007 -15.65871 -15.35105 -15.06856 -15.02282 -14.61506 -14.47008 -14.29854 -14.10066 -14.02767 -13.94632 -13.73326 -13.67748 -13.61927 -13.54420 -13.36057 -13.08836 -12.82196 -12.75070 -12.50655 -12.46351 -12.21259 -11.94897 -11.87081 -11.81903 -11.71898 -11.37146 -10.88767 -10.80947 -10.55822 -10.46742 -10.34719 -10.03374 -9.72571 -9.23491 -4.92138 -0.26349 0.26807 0.31385 0.96843 1.32028 1.35604 1.60783 1.90260 1.95483 1.96434 2.35785 2.61513 2.81630 2.94595 3.18599 3.29745 3.44472 3.49988 3.59044 3.63941 3.67404 3.74389 3.83413 3.92704 3.98011 4.00763 4.08019 4.13194 4.28774 4.29973 4.34103 4.41138 4.44409 4.45552 4.48163 4.52418 4.54363 4.58251 4.60884 4.62148 4.69639 4.72240 4.80977 4.86438 4.87162 4.96360 4.97152 4.97596 5.06835 5.16182 5.25346 5.25781 5.39077 5.51088 5.67809 5.68697 6.20973 6.28036 6.29888 6.60338 6.74821 6.90756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.068 3.932 4 H 0.115 0.885 5 C -0.143 4.143 6 C 0.148 3.852 7 C 0.086 3.914 8 O -0.583 6.583 9 N -0.690 5.690 10 C 0.605 3.395 11 O -0.536 6.536 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.093 4.093 15 C -0.185 4.185 16 C 0.007 3.993 17 C 0.136 3.864 18 O -0.326 6.326 19 C 0.124 3.876 20 C -0.202 4.202 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.083 4.083 24 O -0.560 6.560 25 Si 0.764 3.236 26 C -0.061 4.061 27 C -0.162 4.162 28 O -0.165 6.165 29 C -0.125 4.125 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.398 0.602 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.186 0.814 43 H 0.099 0.901 44 H 0.134 0.866 45 H 0.160 0.840 46 H 0.146 0.854 47 H 0.094 0.906 48 H 0.394 0.606 49 H -0.289 1.289 50 H -0.297 1.297 51 H 0.137 0.863 52 H 0.134 0.866 53 H 0.084 0.916 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -1.445 0.176 1.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.009 3.991 4 H 0.133 0.867 5 C -0.181 4.181 6 C 0.062 3.938 7 C 0.008 3.992 8 O -0.391 6.391 9 N -0.340 5.340 10 C 0.392 3.608 11 O -0.416 6.416 12 C -0.147 4.147 13 C -0.098 4.098 14 C -0.149 4.149 15 C -0.203 4.203 16 C -0.044 4.044 17 C 0.062 3.938 18 O -0.240 6.240 19 C 0.079 3.921 20 C -0.220 4.220 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.191 4.191 24 O -0.370 6.370 25 Si 0.670 3.330 26 C -0.079 4.079 27 C -0.180 4.180 28 O -0.061 6.061 29 C -0.164 4.164 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.203 0.797 43 H 0.117 0.883 44 H 0.152 0.848 45 H 0.177 0.823 46 H 0.163 0.837 47 H 0.112 0.888 48 H 0.244 0.756 49 H -0.216 1.216 50 H -0.225 1.225 51 H 0.155 0.845 52 H 0.152 0.848 53 H 0.102 0.898 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.527 -2.361 -0.207 2.428 hybrid contribution -0.342 1.298 1.320 1.882 sum 0.185 -1.063 1.113 1.550 Atomic orbital electron populations 1.23001 0.79435 1.03836 1.01119 1.87932 1.21565 1.27592 1.94599 1.23681 0.93689 0.86015 0.95686 0.86703 1.23801 0.95634 1.01006 0.97648 1.21610 0.80654 0.93897 0.97621 1.22263 0.99164 0.88395 0.89418 1.86408 1.84778 1.23309 1.44626 1.45605 1.05914 1.70898 1.11550 1.16586 0.81751 0.77138 0.85307 1.90822 1.82969 1.49629 1.18158 1.21949 0.96122 1.13229 0.83414 1.20981 0.91250 0.99007 0.98566 1.20445 1.03984 1.02442 0.88048 1.21901 1.01541 1.05181 0.91721 1.22438 0.80852 1.03944 0.97204 1.21257 0.97432 0.86448 0.88700 1.86108 1.66097 1.34567 1.37275 1.19088 0.92167 0.94403 0.86397 1.21451 1.04413 0.95970 1.00164 1.21027 0.95370 0.98819 0.94574 1.19423 1.02286 0.93902 0.96727 1.24978 0.96886 1.12031 0.85239 1.86553 1.50145 1.82029 1.18308 0.94204 0.79242 0.73372 0.86171 1.20955 0.95641 0.97159 0.94148 1.20635 1.02064 0.98551 0.96791 1.83973 1.25391 1.66491 1.30282 1.23444 0.95550 0.99035 0.98341 0.92761 0.89001 0.92809 0.88736 0.88664 0.93358 0.89880 0.75184 0.75258 0.90521 0.89173 0.90913 0.79660 0.88337 0.84845 0.82260 0.83707 0.88826 0.75596 1.21619 1.22514 0.84488 0.84790 0.89782 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.57 10.72 -148.98 -1.60 -3.16 16 3 C 0.07 0.02 3.97 31.18 0.12 0.14 16 4 H 0.12 -0.51 7.41 -2.39 -0.02 -0.52 16 5 C -0.14 0.00 7.23 31.18 0.23 0.22 16 6 C 0.15 0.41 0.92 4.13 0.00 0.41 16 7 C 0.09 0.08 6.35 71.98 0.46 0.54 16 8 O -0.58 -1.26 13.39 -148.98 -1.99 -3.25 16 9 N -0.69 -3.79 4.94 -424.48 -2.10 -5.89 16 10 C 0.61 5.81 7.46 86.44 0.64 6.45 16 11 O -0.54 -6.99 13.42 -4.35 -0.06 -7.05 16 12 C -0.10 -0.83 7.13 24.07 0.17 -0.66 16 13 C -0.10 -0.62 6.20 -19.74 -0.12 -0.74 16 14 C -0.09 -0.39 9.81 71.23 0.70 0.31 16 15 C -0.18 -0.44 10.73 22.07 0.24 -0.20 16 16 C 0.01 0.02 6.94 24.97 0.17 0.20 16 17 C 0.14 -0.31 5.27 71.23 0.38 0.07 16 18 O -0.33 -1.16 10.12 -92.38 -0.93 -2.10 16 19 C 0.12 0.37 6.69 22.51 0.15 0.52 16 20 C -0.20 0.15 9.04 22.37 0.20 0.36 16 21 C -0.08 0.00 8.66 22.25 0.19 0.19 16 22 C -0.12 -0.26 5.38 -19.85 -0.11 -0.37 16 23 C -0.08 0.06 2.79 71.24 0.20 0.26 16 24 O -0.56 -1.38 12.81 -148.98 -1.91 -3.29 16 25 Si 0.76 -1.95 29.85 68.60 2.05 0.09 16 26 C -0.06 -0.19 9.68 22.25 0.22 0.03 16 27 C -0.16 -0.63 9.99 22.37 0.22 -0.40 16 28 O -0.16 -1.15 10.41 -5.08 -0.05 -1.20 16 29 C -0.13 -0.45 6.02 31.12 0.19 -0.27 16 30 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.09 -0.20 8.10 -2.39 -0.02 -0.22 16 35 H 0.05 0.19 7.73 -2.39 -0.02 0.17 16 36 H 0.08 -0.37 7.36 -2.39 -0.02 -0.39 16 37 H 0.40 -2.31 9.12 -74.06 -0.68 -2.98 16 38 H 0.41 1.53 8.53 -92.71 -0.79 0.74 16 39 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 41 H 0.07 0.55 6.45 -2.39 -0.02 0.54 16 42 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 43 H 0.10 -0.48 7.65 -2.38 -0.02 -0.50 16 44 H 0.13 -1.16 7.67 -2.39 -0.02 -1.18 16 45 H 0.16 -1.10 6.30 -2.91 -0.02 -1.12 16 46 H 0.15 -0.55 4.86 -2.91 -0.01 -0.57 16 47 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 48 H 0.39 -2.17 8.74 -74.06 -0.65 -2.82 16 49 H -0.29 -0.54 7.11 99.48 0.71 0.16 16 50 H -0.30 -1.29 7.05 99.48 0.70 -0.59 16 51 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 52 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 53 H 0.08 0.32 8.10 -2.39 -0.02 0.30 16 54 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 Total: 0.00 -24.91 448.05 -2.22 -27.13 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: -1.11 Total: -9.51 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.48 Total: 8.23 kcal Atomic # 7 Polarization: -3.79 SS G_CDS: -2.10 Total: -5.89 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -6.55 Total: -20.05 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.05 Total: 0.09 kcal Total: -24.91 -2.22 -27.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_4549632.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.578 kcal (2) G-P(sol) polarization free energy of solvation -24.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds