Wall clock time and date at job start Sun Mar 7 2021 09:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99997 * 2 1 4 4 C 1.39154 * 120.07198 * 180.02562 * 3 2 1 5 5 O 1.35989 * 120.07480 * 359.74219 * 4 3 2 6 6 C 1.42896 * 116.99990 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47034 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00013 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00220 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00171 * 174.63529 * 9 7 6 11 11 C 1.52995 * 112.85056 * 75.46084 * 10 9 7 12 12 O 1.42901 * 109.47578 * 55.35471 * 11 10 9 13 13 C 1.53781 * 113.61280 * 206.76712 * 10 9 7 14 14 C 1.53781 * 87.08220 * 89.11077 * 13 10 9 15 15 H 1.09000 * 113.68712 * 139.99020 * 14 13 10 16 16 O 1.42895 * 113.61877 * 270.88185 * 14 13 10 17 17 C 1.42899 * 114.00057 * 247.50007 * 16 14 13 18 18 C 1.53778 * 113.61225 * 304.26187 * 10 9 7 19 19 C 1.38562 * 119.85122 * 180.02562 * 4 3 2 20 20 C 1.38244 * 120.00275 * 0.02562 * 19 4 3 21 21 N 1.48001 * 119.92982 * 179.97438 * 20 19 4 22 22 O 1.21800 * 119.99728 * 0.02562 * 21 20 19 23 23 O 1.21807 * 119.99984 * 180.02562 * 21 20 19 24 24 C 1.38254 * 120.14229 * 359.97438 * 20 19 4 25 25 C 1.50707 * 119.92553 * 179.97438 * 24 20 19 26 26 O 1.42898 * 109.47302 * 75.02261 * 25 24 20 27 27 Si 1.86303 * 109.47120 * 195.02622 * 25 24 20 28 28 C 1.38241 * 120.15042 * 0.02562 * 24 20 19 29 29 H 1.09002 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47106 * 300.00070 * 1 2 3 31 31 H 1.08994 * 109.46879 * 59.99980 * 1 2 3 32 32 H 1.08996 * 109.47688 * 300.00381 * 6 5 4 33 33 H 1.09003 * 109.46712 * 60.00680 * 6 5 4 34 34 H 0.97002 * 119.99655 * 354.62849 * 9 7 6 35 35 H 1.09002 * 109.47265 * 175.35625 * 11 10 9 36 36 H 1.09001 * 109.47073 * 295.35239 * 11 10 9 37 37 H 0.96694 * 114.00210 * 179.97438 * 12 11 10 38 38 H 1.09002 * 113.61721 * 203.66625 * 13 10 9 39 39 H 1.09010 * 113.61403 * 334.56451 * 13 10 9 40 40 H 1.08999 * 109.46746 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.47052 * 299.99657 * 17 16 14 42 42 H 1.08995 * 109.47440 * 60.00157 * 17 16 14 43 43 H 1.08993 * 113.61529 * 25.43237 * 18 10 9 44 44 H 1.09001 * 113.61421 * 156.33976 * 18 10 9 45 45 H 1.07998 * 120.00284 * 179.97438 * 19 4 3 46 46 H 1.09005 * 109.46685 * 315.02226 * 25 24 20 47 47 H 0.96709 * 113.99671 * 60.00008 * 26 25 24 48 48 H 1.48495 * 109.99924 * 58.67639 * 27 25 24 49 49 H 1.48501 * 109.99683 * 179.97438 * 27 25 24 50 50 H 1.08004 * 120.00031 * 179.97438 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2864 -0.0005 5 8 4.1796 0.1478 0.0042 6 6 5.6003 0.3008 0.0028 7 6 6.2519 -1.0581 0.0080 8 8 5.5670 -2.0590 0.0120 9 7 7.5957 -1.1611 0.0081 10 6 8.2296 -2.4761 0.1318 11 6 8.1575 -3.2941 -1.1592 12 8 8.7255 -2.5411 -2.2327 13 6 9.6349 -2.4265 0.7542 14 6 8.9482 -2.5695 2.1227 15 1 9.4775 -3.2279 2.8115 16 8 8.5875 -1.3204 2.7156 17 6 9.3273 -1.0023 3.8961 18 6 7.7894 -3.2570 1.3813 19 6 4.0603 2.5234 0.0000 20 6 3.3030 3.6799 0.0016 21 7 3.9715 5.0003 0.0028 22 8 5.1876 5.0672 0.0018 23 8 3.3054 6.0202 0.0046 24 6 1.9224 3.6057 0.0021 25 6 1.1016 4.8696 0.0045 26 8 1.1335 5.4608 -1.2961 27 14 -0.6592 4.4658 0.4601 28 6 1.2932 2.3748 0.0016 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.9062 0.8465 -0.8898 33 1 5.9070 0.8545 0.8902 34 1 8.1432 -0.3646 -0.0737 35 1 8.7141 -4.2227 -1.0324 36 1 7.1164 -3.5228 -1.3868 37 1 8.7139 -2.9995 -3.0839 38 1 10.2606 -3.2785 0.4883 39 1 10.1397 -1.4701 0.6169 40 1 8.9942 -0.0402 4.2853 41 1 9.1622 -1.7745 4.6474 42 1 10.3892 -0.9497 3.6564 43 1 6.8045 -2.9713 1.7503 44 1 7.9106 -4.3361 1.2869 45 1 5.1386 2.5841 0.0000 46 1 1.5138 5.5692 0.7318 47 1 0.7810 4.8929 -1.9950 48 1 -0.7027 3.8214 1.7972 49 1 -1.4789 5.7041 0.4665 50 1 0.2146 2.3197 0.0025 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_4549636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:27 Heat of formation + Delta-G solvation = -152.389823 kcal Electronic energy + Delta-G solvation = -39464.358511 eV Core-core repulsion = 34044.275139 eV Total energy + Delta-G solvation = -5420.083372 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.159 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.42316 -42.18377 -41.78465 -40.31135 -39.36385 -39.11031 -37.92791 -37.73562 -37.13630 -36.56219 -34.25707 -32.69156 -32.52846 -30.06884 -28.92036 -28.53907 -27.92162 -27.32798 -26.87952 -25.84232 -24.14659 -23.46160 -23.14471 -21.88704 -20.82852 -20.31519 -19.88115 -19.52330 -18.77664 -18.70005 -18.39450 -18.25090 -17.84205 -17.65487 -17.54729 -17.36248 -16.84498 -16.77848 -16.60858 -16.40362 -16.10517 -16.07454 -15.75664 -15.67114 -15.25776 -14.94041 -14.81703 -14.61112 -14.38890 -13.95175 -13.88991 -13.68949 -13.49062 -13.34721 -13.28850 -13.02885 -12.76412 -12.68347 -12.51197 -12.45370 -12.34437 -12.29607 -12.23232 -12.21142 -11.93075 -11.79881 -11.60162 -11.16351 -10.72656 -10.56097 -10.54143 -10.47566 -10.05994 -9.50961 -5.13662 -1.38608 -0.45401 0.14215 0.28487 1.12548 1.22164 1.43994 1.57546 1.87525 1.88358 1.93529 2.31322 2.68708 2.96313 3.02474 3.15709 3.24999 3.43369 3.45760 3.48688 3.55021 3.59426 3.73928 3.85189 3.91649 3.92923 4.04262 4.09632 4.12445 4.21462 4.32991 4.38536 4.40976 4.41316 4.48412 4.53501 4.53643 4.60970 4.61972 4.68246 4.71731 4.81064 4.81750 4.87032 5.00165 5.03354 5.22923 5.47032 5.58294 6.04732 6.25030 6.41781 6.44772 6.71244 6.79646 7.10215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.173 3.827 4 C 0.099 3.901 5 O -0.287 6.287 6 C 0.030 3.970 7 C 0.522 3.478 8 O -0.558 6.558 9 N -0.678 5.678 10 C 0.152 3.848 11 C 0.077 3.923 12 O -0.581 6.581 13 C -0.137 4.137 14 C 0.061 3.939 15 H 0.097 0.903 16 O -0.386 6.386 17 C 0.026 3.974 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.046 4.046 21 N 0.036 4.964 22 O -0.193 6.193 23 O -0.160 6.160 24 C -0.039 4.039 25 C -0.093 4.093 26 O -0.536 6.536 27 Si 0.789 3.211 28 C -0.162 4.162 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.415 0.585 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.395 0.605 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.177 0.823 46 H 0.115 0.885 47 H 0.393 0.607 48 H -0.271 1.271 49 H -0.289 1.289 50 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -6.974 -0.515 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.124 3.876 4 C 0.052 3.948 5 O -0.200 6.200 6 C -0.048 4.048 7 C 0.308 3.692 8 O -0.436 6.436 9 N -0.330 5.330 10 C 0.066 3.934 11 C -0.002 4.002 12 O -0.389 6.389 13 C -0.175 4.175 14 C 0.003 3.997 15 H 0.114 0.886 16 O -0.305 6.305 17 C -0.070 4.070 18 C -0.179 4.179 19 C -0.132 4.132 20 C -0.130 4.130 21 N 0.549 4.451 22 O -0.402 6.402 23 O -0.375 6.375 24 C -0.041 4.041 25 C -0.201 4.201 26 O -0.343 6.343 27 Si 0.691 3.309 28 C -0.180 4.180 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.244 0.756 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.195 0.805 46 H 0.132 0.868 47 H 0.242 0.758 48 H -0.197 1.197 49 H -0.217 1.217 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.634 -7.554 0.793 7.769 hybrid contribution 1.301 0.840 -0.086 1.551 sum -0.333 -6.714 0.708 6.760 Atomic orbital electron populations 1.23826 0.74607 1.07114 1.04246 1.86338 1.24937 1.24433 1.86170 1.18651 0.88971 0.86487 0.93526 1.18009 0.88974 0.85082 1.02781 1.86290 1.18209 1.26823 1.88662 1.22814 0.78906 0.96548 1.06493 1.20092 0.82817 0.90293 0.75996 1.90732 1.63727 1.39218 1.49924 1.45116 1.04912 1.09692 1.73285 1.21363 0.95245 0.83721 0.93097 1.22454 0.97106 0.93952 0.86655 1.86398 1.84047 1.47497 1.20983 1.23744 0.94311 1.05096 0.94335 1.23171 0.95912 0.86131 0.94477 0.88557 1.87863 1.62558 1.37621 1.42447 1.22943 0.96221 1.01565 0.86243 1.23572 0.99300 1.00908 0.94157 1.20875 1.02835 0.88400 1.01069 1.20553 0.92815 0.81837 1.17835 1.43713 1.00818 1.03429 0.97151 1.94513 0.96546 1.94136 1.54967 1.94566 1.64373 1.25404 1.53155 1.20250 0.90920 0.97791 0.95179 1.25809 1.10744 0.92654 0.90845 1.86669 1.87114 1.44532 1.15974 0.94369 0.71609 0.82143 0.82760 1.21090 1.01785 0.87994 1.07144 0.86034 0.90135 0.88747 0.86131 0.86340 0.74803 0.90363 0.94799 0.75585 0.85758 0.89744 0.89173 0.93490 0.92771 0.92036 0.86087 0.80536 0.86821 0.75776 1.19733 1.21657 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.31 -0.24 10.28 -79.71 -0.82 -1.06 16 3 C 0.17 0.08 6.70 22.57 0.15 0.23 16 4 C 0.10 0.30 6.70 22.57 0.15 0.46 16 5 O -0.29 -1.82 9.45 -67.02 -0.63 -2.45 16 6 C 0.03 0.02 5.22 71.24 0.37 0.39 16 7 C 0.52 3.01 7.41 87.66 0.65 3.66 16 8 O -0.56 -7.90 14.42 15.99 0.23 -7.67 16 9 N -0.68 -0.79 4.50 -420.54 -1.89 -2.68 16 10 C 0.15 0.06 0.76 4.13 0.00 0.06 16 11 C 0.08 0.02 6.42 71.98 0.46 0.48 16 12 O -0.58 -0.10 13.54 -148.98 -2.02 -2.12 16 13 C -0.14 0.53 7.23 31.12 0.22 0.76 16 14 C 0.06 -0.12 4.37 31.12 0.14 0.02 16 15 H 0.10 -0.51 7.87 -2.39 -0.02 -0.53 16 16 O -0.39 -0.47 10.13 -148.98 -1.51 -1.98 16 17 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 18 C -0.14 -0.15 6.71 31.12 0.21 0.06 16 19 C -0.11 -0.26 8.54 22.35 0.19 -0.07 16 20 C -0.05 -0.24 6.85 36.38 0.25 0.00 16 21 N 0.04 0.41 4.45 -46.46 -0.21 0.20 16 22 O -0.19 -2.50 18.44 18.89 0.35 -2.15 16 23 O -0.16 -2.25 14.62 25.09 0.37 -1.88 16 24 C -0.04 -0.03 5.26 -19.86 -0.10 -0.13 16 25 C -0.09 -0.09 1.74 71.24 0.12 0.04 16 26 O -0.54 -1.03 11.80 -129.63 -1.53 -2.55 16 27 Si 0.79 -3.81 29.91 68.60 2.05 -1.76 16 28 C -0.16 0.66 7.65 22.35 0.17 0.83 16 29 H 0.12 -1.34 8.14 -2.39 -0.02 -1.35 16 30 H 0.08 -1.00 7.66 -2.39 -0.02 -1.02 16 31 H 0.09 -1.38 7.67 -2.39 -0.02 -1.40 16 32 H 0.12 -0.56 7.67 -2.39 -0.02 -0.58 16 33 H 0.12 -0.44 7.65 -2.39 -0.02 -0.46 16 34 H 0.42 -1.21 8.75 -92.71 -0.81 -2.03 16 35 H 0.08 -0.35 8.09 -2.39 -0.02 -0.37 16 36 H 0.03 0.17 7.52 -2.39 -0.02 0.16 16 37 H 0.39 -2.76 9.12 -74.06 -0.68 -3.44 16 38 H 0.12 -0.93 8.06 -2.39 -0.02 -0.95 16 39 H 0.08 -0.30 8.13 -2.38 -0.02 -0.32 16 40 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.06 0.50 6.72 -2.39 -0.02 0.49 16 44 H 0.12 -0.36 8.10 -2.39 -0.02 -0.38 16 45 H 0.18 -0.18 5.85 -2.91 -0.02 -0.20 16 46 H 0.11 0.66 6.07 -2.38 -0.01 0.64 16 47 H 0.39 -3.20 8.70 -74.05 -0.64 -3.84 16 48 H -0.27 0.41 7.11 99.48 0.71 1.12 16 49 H -0.29 -0.89 7.11 99.48 0.71 -0.18 16 50 H 0.20 -2.30 3.36 -2.91 -0.01 -2.31 16 Total: 0.00 -33.55 417.53 -1.32 -34.87 By element: Atomic # 1 Polarization: -16.81 SS G_CDS: -1.04 Total: -17.85 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.33 Total: 9.09 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.10 Total: -2.47 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -5.56 Total: -21.87 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.05 Total: -1.76 kcal Total: -33.55 -1.32 -34.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_4549636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.523 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds