Wall clock time and date at job start Sun Mar 7 2021 09:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 114.00336 * 2 1 4 4 H 1.09002 * 112.84739 * 339.66586 * 3 2 1 5 5 C 1.53778 * 113.69079 * 110.93292 * 3 2 1 6 6 C 1.53781 * 87.07943 * 89.12701 * 5 3 2 7 7 C 1.53001 * 113.68879 * 139.98969 * 6 5 3 8 8 O 1.42904 * 109.46794 * 83.57866 * 7 6 5 9 9 N 1.46501 * 113.61498 * 270.88001 * 6 5 3 10 10 C 1.34776 * 119.99675 * 153.40904 * 9 6 5 11 11 O 1.21283 * 120.00426 * 4.88290 * 10 9 6 12 12 C 1.50703 * 119.99812 * 184.87594 * 10 9 6 13 13 O 1.42899 * 109.46801 * 180.02562 * 12 10 9 14 14 C 1.35921 * 116.99533 * 179.97438 * 13 12 10 15 15 C 1.38787 * 120.05569 * 179.72163 * 14 13 12 16 16 Br 1.89102 * 120.03789 * 0.02691 * 15 14 13 17 17 C 1.38249 * 119.92574 * 179.72605 * 15 14 13 18 18 C 1.38233 * 120.04404 * 0.57729 * 17 15 14 19 19 C 1.50700 * 119.94336 * 179.71934 * 18 17 15 20 20 O 1.42897 * 109.47637 * 244.97949 * 19 18 17 21 21 Si 1.86306 * 109.46708 * 4.98107 * 19 18 17 22 22 C 1.38285 * 120.11675 * 359.70240 * 18 17 15 23 23 C 1.38143 * 120.07389 * 359.97438 * 22 18 17 24 24 C 1.53779 * 87.08141 * 25.43423 * 6 5 3 25 25 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46787 * 300.00453 * 1 2 3 27 27 H 1.09003 * 109.46676 * 59.99977 * 1 2 3 28 28 H 1.08998 * 113.61502 * 203.67407 * 5 3 2 29 29 H 1.08997 * 113.61398 * 334.57864 * 5 3 2 30 30 H 1.09000 * 109.47221 * 203.57658 * 7 6 5 31 31 H 1.08998 * 109.47333 * 323.58387 * 7 6 5 32 32 H 0.96705 * 113.99543 * 179.97438 * 8 7 6 33 33 H 0.97001 * 120.00223 * 333.41545 * 9 6 5 34 34 H 1.08999 * 109.47133 * 300.00189 * 12 10 9 35 35 H 1.08993 * 109.46952 * 60.00448 * 12 10 9 36 36 H 1.07996 * 119.97354 * 180.27351 * 17 15 14 37 37 H 1.08997 * 109.47372 * 124.97726 * 19 18 17 38 38 H 0.96693 * 114.00554 * 179.97438 * 20 19 18 39 39 H 1.48504 * 109.99611 * 178.68010 * 21 19 18 40 40 H 1.48500 * 109.99778 * 299.99340 * 21 19 18 41 41 H 1.08003 * 119.96063 * 180.02562 * 22 18 17 42 42 H 1.07996 * 120.01896 * 180.02562 * 23 22 18 43 43 H 1.09001 * 113.61119 * 220.02105 * 24 6 5 44 44 H 1.09003 * 113.69614 * 89.12608 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3221 2.0752 -0.3491 5 6 2.7213 1.6652 1.3152 6 6 3.9897 1.0424 0.7084 7 6 5.2677 1.8236 1.0203 8 8 5.7590 1.4393 2.3061 9 7 4.1219 -0.3929 0.9705 10 6 4.8194 -1.1717 0.1199 11 8 5.4112 -0.6720 -0.8134 12 6 4.8639 -2.6635 0.3285 13 8 5.6605 -3.2639 -0.6947 14 6 5.8042 -4.6148 -0.6518 15 6 6.5598 -5.2645 -1.6178 16 35 7.3915 -4.2712 -2.9953 17 6 6.7088 -6.6381 -1.5683 18 6 6.0962 -7.3650 -0.5647 19 6 6.2550 -8.8628 -0.5166 20 8 4.9863 -9.4837 -0.7331 21 14 7.4457 -9.4039 -1.8435 22 6 5.3382 -6.7201 0.3954 23 6 5.1915 -5.3471 0.3544 24 6 3.3924 1.3643 -0.6717 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.8018 2.7382 1.4887 29 1 2.3397 1.1230 2.1803 30 1 6.0210 1.6051 0.2634 31 1 5.0503 2.8917 1.0189 32 1 6.5697 1.8957 2.5698 33 1 3.7075 -0.7827 1.7561 34 1 5.3006 -2.8812 1.3032 35 1 3.8522 -3.0667 0.2854 36 1 7.3002 -7.1439 -2.3171 37 1 6.6412 -9.1561 0.4595 38 1 5.0132 -10.4501 -0.7159 39 1 7.6354 -10.8757 -1.7861 40 1 6.9306 -9.0100 -3.1794 41 1 4.8610 -7.2905 1.1786 42 1 4.5997 -4.8444 1.1050 43 1 3.5526 0.5791 -1.4106 44 1 3.6557 2.3548 -1.0428 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_6201210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:05:58 Heat of formation + Delta-G solvation = -119.586939 kcal Electronic energy + Delta-G solvation = -29978.587124 eV Core-core repulsion = 25525.344435 eV Total energy + Delta-G solvation = -4453.242688 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.060 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.95196 -41.38712 -39.85631 -38.91274 -37.88519 -37.38550 -36.54151 -34.20559 -33.52160 -32.23835 -30.54297 -29.75229 -28.62524 -27.31256 -26.86594 -26.32783 -24.27411 -23.37949 -22.31708 -21.71286 -20.36325 -19.47680 -18.64178 -18.45469 -18.21616 -17.72402 -17.37220 -17.13407 -16.99949 -16.69682 -16.57651 -16.08241 -16.03508 -15.70776 -15.60307 -15.23705 -14.91926 -14.68074 -14.49841 -14.21813 -14.01522 -13.89316 -13.71797 -13.63466 -13.32606 -13.24447 -12.74057 -12.52755 -12.33650 -12.20902 -12.15639 -11.93196 -11.91781 -11.77108 -11.57397 -11.22365 -11.09691 -10.66473 -10.54395 -10.49771 -10.01515 -10.00423 -9.32303 -4.96023 -0.04325 0.06640 0.61024 1.26567 1.40119 1.53803 1.54997 1.91713 2.35438 2.47186 2.71689 3.07474 3.31715 3.45402 3.46583 3.59721 3.66861 3.72252 3.79001 3.86304 4.02138 4.05529 4.06335 4.13857 4.31084 4.35197 4.39091 4.44637 4.50268 4.55103 4.63194 4.63347 4.65213 4.70770 4.78508 4.82908 4.88572 5.01700 5.02711 5.05016 5.29232 5.43971 5.55134 6.04490 6.26907 6.50507 6.60381 6.80534 7.19846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.062 3.938 4 H 0.095 0.905 5 C -0.137 4.137 6 C 0.154 3.846 7 C 0.077 3.923 8 O -0.580 6.580 9 N -0.675 5.675 10 C 0.519 3.481 11 O -0.561 6.561 12 C 0.036 3.964 13 O -0.301 6.301 14 C 0.148 3.852 15 C -0.140 4.140 16 Br -0.047 7.047 17 C -0.057 4.057 18 C -0.113 4.113 19 C -0.066 4.066 20 O -0.555 6.555 21 Si 0.733 3.267 22 C -0.033 4.033 23 C -0.197 4.197 24 C -0.144 4.144 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.394 0.606 33 H 0.415 0.585 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.397 0.603 39 H -0.277 1.277 40 H -0.302 1.302 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.058 0.942 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 0.939 8.243 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C 0.004 3.996 4 H 0.113 0.887 5 C -0.175 4.175 6 C 0.067 3.933 7 C -0.002 4.002 8 O -0.388 6.388 9 N -0.328 5.328 10 C 0.305 3.695 11 O -0.439 6.439 12 C -0.041 4.041 13 O -0.213 6.213 14 C 0.100 3.900 15 C -0.220 4.220 16 Br 0.038 6.962 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.176 4.176 20 O -0.365 6.365 21 Si 0.639 3.361 22 C -0.051 4.051 23 C -0.216 4.216 24 C -0.182 4.182 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.243 0.757 33 H 0.252 0.748 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.248 0.752 39 H -0.204 1.204 40 H -0.230 1.230 41 H 0.176 0.824 42 H 0.187 0.813 43 H 0.077 0.923 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.865 1.388 6.150 6.925 hybrid contribution -0.825 -0.668 0.392 1.131 sum -3.690 0.721 6.542 7.545 Atomic orbital electron populations 1.22947 0.79655 1.03564 1.00807 1.87869 1.20977 1.26962 1.94619 1.23139 0.94283 0.85717 0.96450 0.88697 1.23779 0.92800 1.02922 0.97999 1.21343 0.94131 0.80648 0.97165 1.22477 0.94865 0.98077 0.84782 1.86392 1.47532 1.70049 1.34809 1.45039 1.53665 1.07043 1.27050 1.20256 0.78419 0.88646 0.82214 1.90736 1.44672 1.75857 1.32638 1.22744 0.98233 0.90518 0.92635 1.86236 1.67456 1.17292 1.50295 1.18817 0.94402 0.82767 0.93972 1.21078 1.07670 0.94557 0.98673 1.96744 1.79107 1.73497 1.46870 1.20901 0.98204 0.90847 0.97692 1.19341 1.01082 0.94518 0.96491 1.24667 0.91972 0.91223 1.09741 1.86537 1.29143 1.25975 1.94866 0.94387 0.85828 0.79890 0.75968 1.21234 0.93376 0.93306 0.97212 1.21588 1.04621 0.95263 1.00086 1.23573 0.94895 1.03559 0.96197 0.89035 0.92666 0.93688 0.85721 0.89448 0.95025 0.90373 0.75675 0.74776 0.85804 0.86275 0.83879 0.87332 0.75222 1.20357 1.23026 0.82362 0.81260 0.92291 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.39 -0.48 10.14 -148.98 -1.51 -1.99 16 3 C 0.06 -0.10 4.36 31.12 0.14 0.04 16 4 H 0.10 -0.46 7.88 -2.39 -0.02 -0.48 16 5 C -0.14 0.58 7.22 31.12 0.22 0.81 16 6 C 0.15 0.12 0.81 4.13 0.00 0.12 16 7 C 0.08 0.07 6.47 71.98 0.47 0.53 16 8 O -0.58 -0.37 13.40 -148.98 -2.00 -2.36 16 9 N -0.68 -0.82 4.36 -420.53 -1.83 -2.66 16 10 C 0.52 3.46 7.42 87.66 0.65 4.11 16 11 O -0.56 -9.05 14.52 16.00 0.23 -8.82 16 12 C 0.04 0.03 5.22 71.24 0.37 0.40 16 13 O -0.30 -2.64 9.00 -73.62 -0.66 -3.30 16 14 C 0.15 0.93 6.68 22.51 0.15 1.08 16 15 C -0.14 -1.17 6.24 22.40 0.14 -1.03 16 16 Br -0.05 -0.52 33.16 -20.37 -0.68 -1.20 16 17 C -0.06 -0.29 8.40 22.27 0.19 -0.10 16 18 C -0.11 -0.21 5.38 -19.85 -0.11 -0.32 16 19 C -0.07 0.12 2.79 71.24 0.20 0.32 16 20 O -0.55 -0.21 12.81 -148.98 -1.91 -2.11 16 21 Si 0.73 -0.48 29.84 68.60 2.05 1.56 16 22 C -0.03 0.02 9.68 22.26 0.22 0.24 16 23 C -0.20 0.05 9.04 22.36 0.20 0.25 16 24 C -0.14 -0.32 6.71 31.12 0.21 -0.11 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.05 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.04 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.12 -0.99 7.95 -2.39 -0.02 -1.01 16 29 H 0.09 -0.40 8.13 -2.39 -0.02 -0.42 16 30 H 0.03 0.20 7.68 -2.39 -0.02 0.18 16 31 H 0.08 -0.32 7.93 -2.39 -0.02 -0.34 16 32 H 0.39 -2.51 9.12 -74.05 -0.68 -3.19 16 33 H 0.42 -1.54 8.75 -92.71 -0.81 -2.35 16 34 H 0.12 -0.68 7.66 -2.39 -0.02 -0.70 16 35 H 0.12 -0.49 7.66 -2.39 -0.02 -0.51 16 36 H 0.14 0.48 4.86 -2.91 -0.01 0.47 16 37 H 0.11 -0.79 7.96 -2.39 -0.02 -0.81 16 38 H 0.40 -2.99 8.74 -74.06 -0.65 -3.64 16 39 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 40 H -0.30 -2.36 7.05 99.48 0.70 -1.66 16 41 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 16 42 H 0.17 -1.21 6.30 -2.91 -0.02 -1.23 16 43 H 0.06 0.58 6.72 -2.39 -0.02 0.57 16 44 H 0.12 -0.18 8.10 -2.39 -0.02 -0.20 16 Total: 0.00 -27.52 386.60 -3.05 -30.57 By element: Atomic # 1 Polarization: -16.15 SS G_CDS: -1.03 Total: -17.18 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 4.28 Total: 7.48 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -1.83 Total: -2.66 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -5.84 Total: -18.58 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 2.05 Total: 1.56 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.68 Total: -1.20 kcal Total: -27.52 -3.05 -30.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_6201210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.018 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds