Wall clock time and date at job start Sun Mar 7 2021 09:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42905 * 114.00313 * 2 1 4 4 H 1.09001 * 112.84385 * 341.19292 * 3 2 1 5 5 C 1.53773 * 113.61721 * 112.49971 * 3 2 1 6 6 C 1.53785 * 87.08124 * 89.11710 * 5 3 2 7 7 C 1.53005 * 113.61283 * 139.98195 * 6 5 3 8 8 O 1.42901 * 109.46922 * 83.93271 * 7 6 5 9 9 N 1.46498 * 113.61324 * 270.88398 * 6 5 3 10 10 C 1.34773 * 119.99786 * 161.22584 * 9 6 5 11 11 O 1.21549 * 120.00360 * 5.18113 * 10 9 6 12 12 C 1.47850 * 119.99719 * 185.17873 * 10 9 6 13 13 C 1.39550 * 120.14657 * 353.49384 * 12 10 9 14 14 C 1.37988 * 119.85264 * 179.78788 * 13 12 10 15 15 C 1.50695 * 119.92662 * 180.23033 * 14 13 12 16 16 O 1.42902 * 109.47340 * 255.25569 * 15 14 13 17 17 Si 1.86306 * 109.47463 * 15.25722 * 15 14 13 18 18 C 1.38330 * 120.14350 * 0.48724 * 14 13 12 19 19 C 1.50694 * 119.85507 * 179.72187 * 18 14 13 20 20 C 1.38383 * 120.29416 * 359.74386 * 18 14 13 21 21 C 1.37935 * 120.14435 * 0.02562 * 20 18 14 22 22 C 1.50705 * 120.07696 * 179.97438 * 21 20 18 23 23 C 1.53779 * 87.08101 * 25.43215 * 6 5 3 24 24 H 1.09008 * 109.47188 * 60.00154 * 1 2 3 25 25 H 1.09000 * 109.47708 * 300.00373 * 1 2 3 26 26 H 1.09006 * 109.47642 * 180.02562 * 1 2 3 27 27 H 1.09000 * 113.61437 * 203.66480 * 5 3 2 28 28 H 1.09005 * 113.61358 * 334.57193 * 5 3 2 29 29 H 1.08997 * 109.46840 * 203.93198 * 7 6 5 30 30 H 1.09003 * 109.46813 * 323.93370 * 7 6 5 31 31 H 0.96703 * 113.99378 * 180.02562 * 8 7 6 32 32 H 0.96999 * 119.99787 * 341.22325 * 9 6 5 33 33 H 1.07997 * 120.07378 * 0.02562 * 13 12 10 34 34 H 1.09002 * 109.47253 * 135.25673 * 15 14 13 35 35 H 0.96703 * 113.99477 * 60.00038 * 16 15 14 36 36 H 1.48504 * 109.99732 * 58.67729 * 17 15 14 37 37 H 1.48493 * 110.00273 * 180.02562 * 17 15 14 38 38 H 1.08999 * 109.47162 * 270.02471 * 19 18 14 39 39 H 1.08997 * 109.47221 * 30.02037 * 19 18 14 40 40 H 1.09005 * 109.47631 * 150.02128 * 19 18 14 41 41 H 1.08004 * 119.92806 * 179.97438 * 20 18 14 42 42 H 1.08996 * 109.47244 * 263.11414 * 22 21 20 43 43 H 1.09003 * 109.46770 * 23.11094 * 22 21 20 44 44 H 1.08995 * 109.47604 * 143.10802 * 22 21 20 45 45 H 1.08994 * 113.61645 * 220.01907 * 23 6 5 46 46 H 1.08996 * 113.61156 * 89.11044 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7533 1.6489 1.3017 6 6 4.0061 1.0330 0.6565 7 6 5.2909 1.8112 0.9475 8 8 5.8172 1.4057 2.2127 9 7 4.1435 -0.4054 0.8978 10 6 4.9480 -1.1469 0.1107 11 8 5.6313 -0.6089 -0.7384 12 6 4.9993 -2.6147 0.2802 13 6 4.3228 -3.2220 1.3390 14 6 4.3712 -4.5929 1.4888 15 6 3.6371 -5.2510 2.6285 16 8 4.5732 -5.6464 3.6332 17 14 2.4152 -4.0480 3.3573 18 6 5.0965 -5.3639 0.5983 19 6 5.1501 -6.8599 0.7718 20 6 5.7736 -4.7675 -0.4509 21 6 5.7295 -3.3986 -0.6149 22 6 6.4678 -2.7507 -1.7577 23 6 3.3755 1.3718 -0.7046 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 2.8389 2.7198 1.4861 28 1 2.3925 1.0964 2.1693 29 1 6.0238 1.6073 0.1669 30 1 5.0718 2.8787 0.9704 31 1 6.6336 1.8596 2.4627 32 1 3.6556 -0.8241 1.6241 33 1 3.7595 -2.6208 2.0372 34 1 3.1067 -6.1292 2.2603 35 1 5.0822 -4.9138 4.0067 36 1 1.4554 -3.6047 2.3145 37 1 1.6851 -4.6848 4.4827 38 1 5.9960 -7.1219 1.4073 39 1 4.2264 -7.2051 1.2361 40 1 5.2667 -7.3348 -0.2024 41 1 6.3384 -5.3751 -1.1425 42 1 7.4334 -2.3866 -1.4067 43 1 6.6219 -3.4815 -2.5516 44 1 5.8823 -1.9154 -2.1416 45 1 3.5170 0.5957 -1.4566 46 1 3.6311 2.3669 -1.0685 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_9599494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:06:21 Heat of formation + Delta-G solvation = -99.083272 kcal Electronic energy + Delta-G solvation = -29159.784902 eV Core-core repulsion = 25210.393895 eV Total energy + Delta-G solvation = -3949.391007 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.00703 -40.96741 -39.44404 -37.93840 -37.50611 -36.54206 -34.59882 -34.37009 -32.87071 -29.47190 -28.96323 -28.28194 -27.30143 -26.84861 -25.62183 -23.97828 -23.46763 -22.37067 -20.94686 -20.21766 -19.05727 -18.19985 -17.62709 -17.52611 -17.25035 -16.67121 -16.45705 -16.39536 -16.22184 -16.08585 -15.99184 -15.57889 -15.18723 -14.93376 -14.73575 -14.56520 -14.38677 -14.12477 -13.89620 -13.65778 -13.46533 -13.31920 -13.17403 -13.07577 -12.83110 -12.70589 -12.65187 -12.47955 -12.19391 -12.15453 -11.90263 -11.82659 -11.45640 -10.97871 -10.53804 -10.46952 -10.42081 -10.01037 -9.87748 -9.57986 -5.07194 -0.22090 0.17472 1.25850 1.59688 1.81748 1.91518 2.08495 2.68648 2.71372 3.12177 3.44406 3.48529 3.52480 3.62502 3.64780 3.72258 3.78798 3.84763 4.13153 4.18614 4.20062 4.38039 4.43824 4.48343 4.51191 4.52100 4.52897 4.56949 4.66236 4.68371 4.68898 4.73452 4.77257 4.80296 4.82055 4.88123 4.90493 5.02581 5.05570 5.08358 5.12379 5.25619 5.47623 5.49560 5.64586 5.81286 6.27682 6.55848 6.73941 6.87302 7.25333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.060 3.940 4 H 0.098 0.902 5 C -0.141 4.141 6 C 0.151 3.849 7 C 0.079 3.921 8 O -0.581 6.581 9 N -0.680 5.680 10 C 0.563 3.437 11 O -0.559 6.559 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.065 4.065 16 O -0.548 6.548 17 Si 0.748 3.252 18 C -0.034 4.034 19 C -0.118 4.118 20 C -0.137 4.137 21 C -0.027 4.027 22 C -0.114 4.114 23 C -0.140 4.140 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.393 0.607 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.394 0.606 36 H -0.282 1.282 37 H -0.290 1.290 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 3.814 2.132 4.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C 0.002 3.998 4 H 0.116 0.884 5 C -0.179 4.179 6 C 0.064 3.936 7 C 0.000 4.000 8 O -0.388 6.388 9 N -0.331 5.331 10 C 0.352 3.648 11 O -0.439 6.439 12 C -0.160 4.160 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.175 4.175 16 O -0.356 6.356 17 Si 0.654 3.346 18 C -0.035 4.035 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.029 4.029 22 C -0.171 4.171 23 C -0.179 4.179 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.242 0.758 32 H 0.243 0.757 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.244 0.756 36 H -0.208 1.208 37 H -0.217 1.217 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.784 3.247 1.564 4.554 hybrid contribution 0.246 -0.214 -0.290 0.436 sum -2.538 3.032 1.274 4.154 Atomic orbital electron populations 1.22933 0.79838 1.03187 1.01052 1.87894 1.20858 1.27283 1.94635 1.23181 0.94501 0.85570 0.96539 0.88433 1.23822 0.92949 1.03169 0.97952 1.21390 0.94272 0.80599 0.97330 1.22456 0.94503 0.97614 0.85431 1.86410 1.46188 1.69275 1.36931 1.45232 1.46534 1.07534 1.33760 1.18257 0.79034 0.86693 0.80794 1.90682 1.43749 1.73715 1.35776 1.19763 1.04045 0.92867 0.99278 1.21135 0.96838 0.94108 0.96209 1.20174 1.01714 0.93174 0.99014 1.25051 0.98024 1.05793 0.88634 1.86476 1.55880 1.39019 1.54217 0.94130 0.78458 0.83347 0.78709 1.20207 0.93350 0.97256 0.92668 1.20920 1.03498 0.89693 1.03268 1.21179 1.01360 0.93588 0.99363 1.20222 0.93898 0.93600 0.95131 1.20986 1.00003 1.00897 0.95171 1.23589 0.94660 1.03524 0.96090 0.93251 0.92536 0.89789 0.85420 0.89644 0.94367 0.90461 0.75837 0.75678 0.83900 0.86942 0.75645 1.20786 1.21683 0.89928 0.91023 0.90370 0.83660 0.91148 0.90965 0.90439 0.92424 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -1.03 10.13 -148.98 -1.51 -2.54 16 3 C 0.06 -0.09 4.37 31.12 0.14 0.05 16 4 H 0.10 -0.51 7.87 -2.39 -0.02 -0.53 16 5 C -0.14 0.53 7.20 31.12 0.22 0.76 16 6 C 0.15 0.18 0.80 4.13 0.00 0.18 16 7 C 0.08 0.06 6.28 71.98 0.45 0.51 16 8 O -0.58 -0.72 13.39 -148.98 -1.99 -2.72 16 9 N -0.68 -2.57 4.33 -423.36 -1.83 -4.41 16 10 C 0.56 4.81 7.18 86.79 0.62 5.43 16 11 O -0.56 -7.34 11.46 -3.87 -0.04 -7.39 16 12 C -0.16 -1.07 5.87 -20.09 -0.12 -1.18 16 13 C -0.06 -0.15 8.14 22.53 0.18 0.03 16 14 C -0.14 -0.29 5.25 -19.90 -0.10 -0.40 16 15 C -0.06 0.00 2.04 71.23 0.15 0.14 16 16 O -0.55 0.02 12.80 -148.98 -1.91 -1.89 16 17 Si 0.75 -0.85 29.92 68.60 2.05 1.21 16 18 C -0.03 -0.10 5.89 -19.81 -0.12 -0.22 16 19 C -0.12 0.02 9.53 71.23 0.68 0.70 16 20 C -0.14 -0.52 9.31 22.23 0.21 -0.31 16 21 C -0.03 -0.19 5.91 -19.61 -0.12 -0.30 16 22 C -0.11 -0.77 8.72 71.24 0.62 -0.15 16 23 C -0.14 -0.17 6.82 31.12 0.21 0.04 16 24 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 25 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.08 -0.16 8.14 -2.38 -0.02 -0.18 16 27 H 0.13 -1.03 7.94 -2.39 -0.02 -1.05 16 28 H 0.08 -0.32 8.10 -2.38 -0.02 -0.34 16 29 H 0.04 0.21 7.19 -2.39 -0.02 0.19 16 30 H 0.08 -0.35 7.91 -2.39 -0.02 -0.37 16 31 H 0.39 -2.32 9.12 -74.05 -0.68 -2.99 16 32 H 0.41 0.27 6.74 -92.71 -0.62 -0.36 16 33 H 0.14 -0.34 3.51 -2.91 -0.01 -0.35 16 34 H 0.11 0.06 6.48 -2.39 -0.02 0.04 16 35 H 0.39 -2.84 8.70 -74.06 -0.64 -3.49 16 36 H -0.28 -1.13 7.11 99.48 0.71 -0.43 16 37 H -0.29 -1.57 7.11 99.48 0.71 -0.86 16 38 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 -0.01 6.22 -2.39 -0.01 -0.03 16 40 H 0.08 -0.17 8.08 -2.38 -0.02 -0.19 16 41 H 0.15 0.01 8.05 -2.91 -0.02 -0.01 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.07 0.22 8.04 -2.39 -0.02 0.20 16 44 H 0.08 0.83 5.88 -2.39 -0.01 0.82 16 45 H 0.06 0.45 7.38 -2.39 -0.02 0.44 16 46 H 0.12 -0.39 8.10 -2.39 -0.02 -0.41 16 Total: 0.00 -19.34 366.41 -1.85 -21.19 By element: Atomic # 1 Polarization: -9.02 SS G_CDS: -0.87 Total: -9.90 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.26 Total: 6.45 kcal Atomic # 7 Polarization: -2.57 SS G_CDS: -1.83 Total: -4.41 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -5.46 Total: -14.54 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.05 Total: 1.21 kcal Total: -19.34 -1.85 -21.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_9599494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.897 kcal (2) G-P(sol) polarization free energy of solvation -19.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds