Wall clock time and date at job start Sun Mar 7 2021 14:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99640 * 2 1 4 4 H 1.08999 * 112.85442 * 316.20086 * 3 2 1 5 5 C 1.53784 * 113.68864 * 87.46515 * 3 2 1 6 6 C 1.53783 * 87.08249 * 139.98790 * 5 3 2 7 7 H 1.09005 * 113.68605 * 89.12437 * 6 5 3 8 8 C 1.52991 * 113.61776 * 220.01944 * 6 5 3 9 9 N 1.46500 * 109.47180 * 272.49832 * 8 6 5 10 10 C 1.34784 * 120.00159 * 179.97438 * 9 8 6 11 11 O 1.21689 * 119.99542 * 0.02562 * 10 9 8 12 12 C 1.46674 * 119.99827 * 179.97438 * 10 9 8 13 13 C 1.37877 * 126.23051 * 180.02562 * 12 10 9 14 14 C 1.39833 * 107.08712 * 180.02562 * 13 12 10 15 15 C 1.50699 * 126.07045 * 179.97438 * 14 13 12 16 16 O 1.42892 * 109.47249 * 300.00054 * 15 14 13 17 17 Si 1.86298 * 109.47032 * 179.97438 * 15 14 13 18 18 C 1.35461 * 107.86428 * 0.23873 * 14 13 12 19 19 N 1.35537 * 108.86552 * 359.60548 * 18 14 13 20 20 C 1.53780 * 87.08120 * 334.56687 * 6 5 3 21 21 H 1.08999 * 109.47332 * 299.99636 * 1 2 3 22 22 H 1.09001 * 109.47387 * 59.99979 * 1 2 3 23 23 H 1.09007 * 109.46844 * 179.97438 * 1 2 3 24 24 H 1.09004 * 113.61681 * 25.44188 * 5 3 2 25 25 H 1.08992 * 113.61683 * 254.53815 * 5 3 2 26 26 H 1.08998 * 109.47477 * 152.49593 * 8 6 5 27 27 H 1.09006 * 109.47323 * 32.49606 * 8 6 5 28 28 H 0.97000 * 120.00502 * 359.97438 * 9 8 6 29 29 H 1.08002 * 126.45625 * 359.97438 * 13 12 10 30 30 H 1.09004 * 109.46453 * 60.00122 * 15 14 13 31 31 H 0.96703 * 114.00176 * 299.99748 * 16 15 14 32 32 H 1.48506 * 109.99834 * 58.68765 * 17 15 14 33 33 H 1.48502 * 110.00011 * 180.02562 * 17 15 14 34 34 H 1.07997 * 125.56487 * 179.71889 * 18 14 13 35 35 H 0.97005 * 125.67269 * 180.13586 * 19 18 14 36 36 H 1.09004 * 113.61206 * 139.97490 * 20 6 5 37 37 H 1.08991 * 113.62089 * 270.88415 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 -0.6952 5 6 2.3002 2.3835 1.4069 6 6 3.5201 3.1752 0.9068 7 1 3.2652 4.1359 0.4593 8 6 4.6471 3.2796 1.9362 9 7 4.4189 4.4455 2.7935 10 6 5.2900 4.7376 3.7798 11 8 6.2661 4.0330 3.9577 12 6 5.0618 5.9051 4.6377 13 6 5.8651 6.3213 5.6781 14 6 5.2758 7.4684 6.2187 15 6 5.8019 8.2735 7.3790 16 8 5.8770 7.4433 8.5396 17 14 4.6567 9.7048 7.7116 18 6 4.1451 7.7243 5.5181 19 7 4.0066 6.7847 4.5511 20 6 3.7283 2.0520 -0.1227 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.5388 1.6609 2.1874 25 1 1.4450 3.0112 1.6569 26 1 5.6012 3.3888 1.4207 27 1 4.6656 2.3773 2.5475 28 1 3.6411 5.0073 2.6514 29 1 6.7771 5.8496 6.0131 30 1 6.7953 8.6518 7.1378 31 1 5.0273 7.0710 8.8126 32 1 3.2910 9.2038 8.0101 33 1 5.1647 10.5070 8.8533 34 1 3.4659 8.5442 5.6992 35 1 3.2821 6.7376 3.9077 36 1 4.0257 2.4121 -1.1076 37 1 4.3571 1.2388 0.2394 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_10543058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:21:35 Heat of formation + Delta-G solvation = 1.472398 kcal Electronic energy + Delta-G solvation = -19357.895216 eV Core-core repulsion = 16229.492969 eV Total energy + Delta-G solvation = -3128.402247 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46732 -40.65671 -39.60264 -37.79981 -35.71137 -32.62442 -31.07756 -29.91320 -29.25633 -26.75662 -26.45650 -24.68349 -23.29451 -21.40886 -20.91914 -20.54307 -19.86121 -17.90083 -17.39415 -17.20855 -16.82022 -16.62545 -16.34153 -16.05009 -15.60757 -15.23941 -15.06184 -14.78987 -14.51935 -14.44984 -14.13991 -14.05396 -13.84412 -13.53228 -13.48964 -13.44483 -12.84149 -12.44578 -11.97051 -11.85585 -11.79495 -11.38953 -11.30188 -10.80636 -10.50694 -10.31887 -9.93874 -9.28357 -8.73307 -4.83574 0.36126 0.76109 1.38697 1.58245 1.62979 1.69754 1.92962 2.10511 2.15626 2.25544 3.36321 3.41495 3.55357 3.60063 3.76017 3.83794 3.99086 4.12383 4.18761 4.28971 4.29796 4.31522 4.38353 4.58708 4.70843 4.73480 4.74968 4.79958 4.84235 4.90454 4.94671 5.00570 5.03330 5.21522 5.40810 5.58565 5.73280 6.35023 6.52485 6.63456 7.04997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.072 4.072 4 H 0.121 0.879 5 C -0.119 4.119 6 C -0.102 4.102 7 H 0.127 0.873 8 C 0.132 3.868 9 N -0.710 5.710 10 C 0.585 3.415 11 O -0.579 6.579 12 C -0.069 4.069 13 C -0.106 4.106 14 C -0.225 4.225 15 C -0.063 4.063 16 O -0.558 6.558 17 Si 0.792 3.208 18 C 0.062 3.938 19 N -0.513 5.513 20 C -0.105 4.105 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.413 0.587 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.384 0.616 32 H -0.268 1.268 33 H -0.315 1.315 34 H 0.217 0.783 35 H 0.438 0.562 36 H 0.092 0.908 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 6.406 -5.064 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.094 6.094 3 C -0.200 4.200 4 H 0.139 0.861 5 C -0.158 4.158 6 C -0.122 4.122 7 H 0.145 0.855 8 C 0.008 3.992 9 N -0.362 5.362 10 C 0.374 3.626 11 O -0.459 6.459 12 C -0.182 4.182 13 C -0.134 4.134 14 C -0.231 4.231 15 C -0.171 4.171 16 O -0.366 6.366 17 Si 0.696 3.304 18 C -0.076 4.076 19 N -0.111 5.111 20 C -0.144 4.144 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.233 0.767 32 H -0.194 1.194 33 H -0.244 1.244 34 H 0.233 0.767 35 H 0.279 0.721 36 H 0.111 0.889 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.746 5.419 -4.637 10.530 hybrid contribution -1.151 -0.372 0.477 1.300 sum -8.898 5.047 -4.161 11.043 Atomic orbital electron populations 1.23366 0.91616 1.07012 1.05767 1.87283 1.10547 1.13820 1.97786 1.24745 1.01193 0.92015 1.02048 0.86131 1.23363 0.98797 0.98912 0.94777 1.22683 0.94310 0.99714 0.95511 0.85494 1.21364 0.98890 0.87575 0.91336 1.45661 1.27277 1.30504 1.32774 1.17295 0.82375 0.83077 0.79859 1.90857 1.31152 1.52003 1.71900 1.20083 0.95678 0.97694 1.04714 1.21224 0.99559 0.97202 0.95365 1.19888 0.99232 1.00657 1.03359 1.24791 1.09375 1.00005 0.82884 1.86567 1.36962 1.67290 1.45797 0.94311 0.74547 0.76075 0.85454 1.22383 0.99015 0.95537 0.90711 1.41838 1.20624 1.20910 1.27731 1.22795 0.93134 0.97868 1.00628 0.89572 0.89521 0.88041 0.90065 0.88982 0.91793 0.92499 0.75024 0.86041 0.87425 0.76701 1.19434 1.24391 0.76715 0.72058 0.88917 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.38 10.76 113.37 1.22 1.60 16 2 S -0.32 -0.62 22.18 -56.49 -1.25 -1.87 16 3 C -0.07 0.32 4.27 31.12 0.13 0.45 16 4 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 5 C -0.12 0.80 7.22 31.12 0.22 1.02 16 6 C -0.10 0.82 3.75 -10.27 -0.04 0.78 16 7 H 0.13 -1.60 8.14 -2.38 -0.02 -1.62 16 8 C 0.13 -0.28 5.51 86.38 0.48 0.20 16 9 N -0.71 2.36 5.55 -467.09 -2.59 -0.23 16 10 C 0.59 3.30 7.79 86.44 0.67 3.97 16 11 O -0.58 -9.41 16.88 -4.31 -0.07 -9.48 16 12 C -0.07 -0.15 7.06 40.35 0.28 0.13 16 13 C -0.11 -0.67 10.59 22.57 0.24 -0.43 16 14 C -0.23 -0.01 5.44 -20.12 -0.11 -0.12 16 15 C -0.06 -0.02 3.02 71.24 0.22 0.20 16 16 O -0.56 -2.89 12.88 -148.98 -1.92 -4.81 16 17 Si 0.79 -3.80 30.59 68.60 2.10 -1.70 16 18 C 0.06 -0.45 10.45 83.48 0.87 0.42 16 19 N -0.51 3.90 5.99 -183.62 -1.10 2.80 16 20 C -0.10 0.49 7.23 31.12 0.23 0.72 16 21 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 23 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.08 -0.21 7.86 -2.39 -0.02 -0.23 16 25 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.06 0.12 7.84 -2.38 -0.02 0.10 16 28 H 0.41 -4.72 7.60 -92.71 -0.70 -5.42 16 29 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.11 0.09 7.96 -2.38 -0.02 0.07 16 31 H 0.38 -0.44 8.70 -74.06 -0.64 -1.08 16 32 H -0.27 0.88 7.11 99.48 0.71 1.58 16 33 H -0.32 -1.52 7.11 99.48 0.71 -0.81 16 34 H 0.22 -3.31 6.19 -2.91 -0.02 -3.33 16 35 H 0.44 -6.95 8.19 -92.70 -0.76 -7.71 16 36 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.08 -0.09 8.06 -2.39 -0.02 -0.10 16 Total: 0.00 -25.94 326.97 -1.39 -27.33 By element: Atomic # 1 Polarization: -20.02 SS G_CDS: -0.97 Total: -20.98 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 4.41 Total: 8.95 kcal Atomic # 7 Polarization: 6.26 SS G_CDS: -3.69 Total: 2.57 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.99 Total: -14.29 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.10 Total: -1.70 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.25 Total: -1.87 kcal Total: -25.94 -1.39 -27.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_10543058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.804 kcal (2) G-P(sol) polarization free energy of solvation -25.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds