Wall clock time and date at job start Sun Mar 7 2021 14:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99600 * 2 1 4 4 H 1.09001 * 112.85195 * 316.19686 * 3 2 1 5 5 C 1.53776 * 113.61636 * 87.50685 * 3 2 1 6 6 C 1.53775 * 87.08562 * 139.97596 * 5 3 2 7 7 H 1.08998 * 113.68751 * 89.12539 * 6 5 3 8 8 C 1.52998 * 113.61808 * 220.02077 * 6 5 3 9 9 N 1.46501 * 109.46864 * 272.49564 * 8 6 5 10 10 C 1.34772 * 120.00109 * 179.97438 * 9 8 6 11 11 O 1.21704 * 119.99930 * 354.93119 * 10 9 8 12 12 C 1.46681 * 120.00361 * 174.93459 * 10 9 8 13 13 C 1.37868 * 126.22934 * 4.98365 * 12 10 9 14 14 C 1.39840 * 107.08250 * 179.84960 * 13 12 10 15 15 C 1.35451 * 107.86283 * 0.41145 * 14 13 12 16 16 C 1.50705 * 125.55940 * 179.70610 * 15 14 13 17 17 O 1.42903 * 109.46642 * 150.04391 * 16 15 14 18 18 Si 1.86295 * 109.47322 * 30.04399 * 16 15 14 19 19 N 1.35534 * 108.87506 * 359.74444 * 15 14 13 20 20 C 1.46492 * 125.67748 * 179.97438 * 19 15 14 21 21 C 1.53783 * 113.61026 * 185.00310 * 3 2 1 22 22 H 1.09007 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47188 * 299.99625 * 1 2 3 24 24 H 1.08998 * 109.47007 * 60.00031 * 1 2 3 25 25 H 1.08998 * 113.61565 * 254.53058 * 5 3 2 26 26 H 1.09006 * 113.61469 * 25.42695 * 5 3 2 27 27 H 1.09002 * 109.47209 * 32.49347 * 8 6 5 28 28 H 1.08997 * 109.47195 * 152.50205 * 8 6 5 29 29 H 0.97002 * 119.99820 * 0.02562 * 9 8 6 30 30 H 1.07999 * 126.46000 * 359.96192 * 13 12 10 31 31 H 1.08000 * 126.06661 * 180.14040 * 14 13 12 32 32 H 1.08993 * 109.47314 * 270.03762 * 16 15 14 33 33 H 0.96699 * 113.99659 * 179.97438 * 17 16 15 34 34 H 1.48493 * 110.00034 * 298.68044 * 18 16 15 35 35 H 1.48504 * 110.00017 * 59.99803 * 18 16 15 36 36 H 1.08999 * 109.47058 * 275.80337 * 20 19 15 37 37 H 1.09004 * 109.47334 * 35.80257 * 20 19 15 38 38 H 1.09000 * 109.46932 * 155.80104 * 20 19 15 39 39 H 1.08998 * 113.61443 * 334.56647 * 21 3 2 40 40 H 1.09002 * 113.61595 * 105.47044 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6108 2.3431 -0.6953 5 6 2.3008 2.3816 1.4076 6 6 3.5206 3.1738 0.9083 7 1 3.2657 4.1352 0.4623 8 6 4.6479 3.2766 1.9376 9 7 4.4202 4.4413 2.7965 10 6 5.2914 4.7319 3.7829 11 8 6.2162 3.9770 4.0199 12 6 5.1252 5.9580 4.5707 13 6 4.0780 6.8499 4.4788 14 6 4.3203 7.8653 5.4092 15 6 5.4901 7.5869 6.0328 16 6 6.1321 8.4266 7.1071 17 8 6.8854 7.5851 7.9826 18 14 4.8100 9.3088 8.0788 19 7 5.9893 6.4305 5.5324 20 6 7.2405 5.7904 5.9458 21 6 3.7283 2.0520 -0.1229 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.4456 3.0090 1.6589 26 1 2.5395 1.6578 2.1870 27 1 4.6665 2.3734 2.5476 28 1 5.6018 3.3866 1.4219 29 1 3.6419 5.0029 2.6558 30 1 3.2294 6.7771 3.8147 31 1 3.6892 8.7220 5.5943 32 1 6.7954 9.1593 6.6477 33 1 7.3275 8.0595 8.6999 34 1 4.0399 10.2111 7.1856 35 1 3.8990 8.3206 8.7103 36 1 8.0734 6.2359 5.4019 37 1 7.3864 5.9354 7.0162 38 1 7.1925 4.7237 5.7268 39 1 4.3572 1.2382 0.2380 40 1 4.0255 2.4134 -1.1074 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:21:40 Heat of formation + Delta-G solvation = 9.720918 kcal Electronic energy + Delta-G solvation = -21527.312639 eV Core-core repulsion = 18243.730456 eV Total energy + Delta-G solvation = -3283.582184 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.53004 -40.63202 -39.52950 -37.79869 -35.63415 -33.70413 -31.79365 -30.01891 -29.43234 -27.39068 -26.88232 -26.56048 -24.13675 -22.94115 -21.48335 -20.85080 -20.13330 -18.81160 -18.47728 -17.51849 -17.11606 -16.80973 -16.76050 -16.35388 -16.01770 -15.54003 -15.32184 -15.10197 -14.86730 -14.72608 -14.38818 -14.22933 -14.13851 -13.82944 -13.64732 -13.61266 -13.55952 -13.13308 -12.99260 -12.87026 -12.60883 -12.01663 -11.89459 -11.86836 -11.49311 -10.96494 -10.82284 -10.63105 -10.13055 -9.72733 -9.06076 -8.65569 -5.05208 0.43795 0.71765 1.11051 1.53855 1.57188 1.67148 1.75391 2.02687 2.40140 2.42549 3.04346 3.27583 3.31596 3.49608 3.63099 3.64535 3.79145 4.04109 4.05423 4.16765 4.19389 4.22608 4.27949 4.34750 4.48942 4.53033 4.60301 4.60540 4.64713 4.72491 4.75199 4.83363 4.91827 4.94704 5.01282 5.11295 5.22287 5.40837 5.70374 6.00790 6.17353 6.41135 6.47675 7.20179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.123 4.123 6 C -0.121 4.121 7 H 0.102 0.898 8 C 0.134 3.866 9 N -0.718 5.718 10 C 0.591 3.409 11 O -0.544 6.544 12 C -0.051 4.051 13 C -0.136 4.136 14 C -0.213 4.213 15 C 0.060 3.940 16 C -0.053 4.053 17 O -0.550 6.550 18 Si 0.717 3.283 19 N -0.385 5.385 20 C 0.055 3.945 21 C -0.100 4.100 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.403 0.597 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.387 0.613 34 H -0.253 1.253 35 H -0.253 1.253 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 5.170 0.981 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.212 4.212 4 H 0.124 0.876 5 C -0.163 4.163 6 C -0.142 4.142 7 H 0.120 0.880 8 C 0.010 3.990 9 N -0.370 5.370 10 C 0.379 3.621 11 O -0.423 6.423 12 C -0.166 4.166 13 C -0.162 4.162 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.163 4.163 17 O -0.358 6.358 18 Si 0.615 3.385 19 N -0.057 5.057 20 C -0.086 4.086 21 C -0.139 4.139 22 H 0.119 0.881 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.238 0.762 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.236 0.764 34 H -0.178 1.178 35 H -0.177 1.177 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.729 3.162 0.884 3.363 hybrid contribution -1.147 1.035 -0.777 1.729 sum -1.876 4.196 0.108 4.598 Atomic orbital electron populations 1.23373 0.94119 1.06633 1.04935 1.86993 1.07579 1.10358 1.97630 1.24675 1.01053 0.94318 1.01201 0.87576 1.23422 0.98122 0.99139 0.95628 1.22766 0.95681 0.99039 0.96679 0.87989 1.21390 0.98178 0.88352 0.91052 1.45586 1.27488 1.30607 1.33296 1.16936 0.82004 0.83717 0.79437 1.90795 1.32684 1.50522 1.68344 1.20043 0.96015 0.99672 1.00848 1.21223 0.98564 0.94701 1.01687 1.20518 0.97568 1.02987 1.02589 1.20090 0.96507 0.90168 0.99091 1.24547 1.03446 0.95503 0.92763 1.86376 1.69080 1.36672 1.43687 0.95454 0.78481 0.80969 0.83553 1.43772 1.17797 1.17336 1.26747 1.22627 0.82369 1.00293 1.03261 1.22764 0.93386 0.97881 0.99859 0.88062 0.90417 0.90493 0.90783 0.88373 0.90674 0.90884 0.76179 0.83542 0.83798 0.90130 0.76371 1.17814 1.17694 0.91088 0.87291 0.87819 0.88573 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 10.76 101.05 1.09 1.19 16 2 S -0.25 -0.31 22.17 -107.50 -2.38 -2.70 16 3 C -0.08 0.09 4.28 -25.92 -0.11 -0.02 16 4 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 5 C -0.12 0.21 7.22 -25.92 -0.19 0.03 16 6 C -0.12 0.28 3.75 -89.81 -0.34 -0.06 16 7 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 8 C 0.13 -0.03 5.52 -4.04 -0.02 -0.05 16 9 N -0.72 -0.30 5.54 -61.62 -0.34 -0.64 16 10 C 0.59 2.34 7.77 -12.85 -0.10 2.24 16 11 O -0.54 -3.81 14.55 5.18 0.08 -3.73 16 12 C -0.05 -0.20 6.88 -81.98 -0.56 -0.76 16 13 C -0.14 -0.28 10.36 -39.12 -0.41 -0.69 16 14 C -0.21 -0.56 9.37 -39.98 -0.37 -0.93 16 15 C 0.06 0.18 6.18 -81.95 -0.51 -0.33 16 16 C -0.05 0.03 2.98 36.01 0.11 0.13 16 17 O -0.55 0.59 9.81 -35.23 -0.35 0.24 16 18 Si 0.72 -1.24 31.22 -169.99 -5.31 -6.55 16 19 N -0.38 -1.59 3.16 -115.62 -0.37 -1.96 16 20 C 0.05 0.16 10.32 59.84 0.62 0.78 16 21 C -0.10 0.15 7.23 -25.91 -0.19 -0.03 16 22 H 0.10 -0.13 8.14 -51.92 -0.42 -0.55 16 23 H 0.08 -0.11 8.14 -51.92 -0.42 -0.54 16 24 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 25 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 26 H 0.10 -0.05 7.85 -51.93 -0.41 -0.46 16 27 H 0.07 0.08 7.84 -51.93 -0.41 -0.33 16 28 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.40 -0.82 7.37 -40.82 -0.30 -1.12 16 30 H 0.15 -0.17 7.45 -52.49 -0.39 -0.56 16 31 H 0.14 0.18 6.70 -52.49 -0.35 -0.17 16 32 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.39 -2.40 8.74 45.56 0.40 -2.00 16 34 H -0.25 -0.10 6.87 56.52 0.39 0.29 16 35 H -0.25 -0.58 7.11 56.52 0.40 -0.17 16 36 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.11 0.22 5.48 -51.93 -0.28 -0.06 16 38 H 0.10 0.45 5.91 -51.93 -0.31 0.15 16 39 H 0.10 -0.06 8.06 -51.93 -0.42 -0.48 16 40 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 LS Contribution 339.70 15.07 5.12 5.12 Total: 0.00 -8.65 339.70 -10.43 -19.08 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: -5.90 Total: -10.38 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.98 Total: 1.50 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: -0.71 Total: -2.59 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.27 Total: -3.49 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.31 Total: -6.55 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.38 Total: -2.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -8.65 -10.43 -19.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.805 kcal (2) G-P(sol) polarization free energy of solvation -8.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds