Wall clock time and date at job start Sun Mar 7 2021 14:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99600 * 2 1 4 4 H 1.09001 * 112.85195 * 316.19686 * 3 2 1 5 5 C 1.53776 * 113.61636 * 87.50685 * 3 2 1 6 6 C 1.53775 * 87.08562 * 139.97596 * 5 3 2 7 7 H 1.08998 * 113.68751 * 89.12539 * 6 5 3 8 8 C 1.52998 * 113.61808 * 220.02077 * 6 5 3 9 9 N 1.46501 * 109.46864 * 272.49564 * 8 6 5 10 10 C 1.34772 * 120.00109 * 179.97438 * 9 8 6 11 11 O 1.21704 * 119.99930 * 354.93119 * 10 9 8 12 12 C 1.46681 * 120.00361 * 174.93459 * 10 9 8 13 13 C 1.37868 * 126.22934 * 4.98365 * 12 10 9 14 14 C 1.39840 * 107.08250 * 179.84960 * 13 12 10 15 15 C 1.35451 * 107.86283 * 0.41145 * 14 13 12 16 16 C 1.50705 * 125.55940 * 179.70610 * 15 14 13 17 17 O 1.42903 * 109.46642 * 150.04391 * 16 15 14 18 18 Si 1.86295 * 109.47322 * 30.04399 * 16 15 14 19 19 N 1.35534 * 108.87506 * 359.74444 * 15 14 13 20 20 C 1.46492 * 125.67748 * 179.97438 * 19 15 14 21 21 C 1.53783 * 113.61026 * 185.00310 * 3 2 1 22 22 H 1.09007 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47188 * 299.99625 * 1 2 3 24 24 H 1.08998 * 109.47007 * 60.00031 * 1 2 3 25 25 H 1.08998 * 113.61565 * 254.53058 * 5 3 2 26 26 H 1.09006 * 113.61469 * 25.42695 * 5 3 2 27 27 H 1.09002 * 109.47209 * 32.49347 * 8 6 5 28 28 H 1.08997 * 109.47195 * 152.50205 * 8 6 5 29 29 H 0.97002 * 119.99820 * 0.02562 * 9 8 6 30 30 H 1.07999 * 126.46000 * 359.96192 * 13 12 10 31 31 H 1.08000 * 126.06661 * 180.14040 * 14 13 12 32 32 H 1.08993 * 109.47314 * 270.03762 * 16 15 14 33 33 H 0.96699 * 113.99659 * 179.97438 * 17 16 15 34 34 H 1.48493 * 110.00034 * 298.68044 * 18 16 15 35 35 H 1.48504 * 110.00017 * 59.99803 * 18 16 15 36 36 H 1.08999 * 109.47058 * 275.80337 * 20 19 15 37 37 H 1.09004 * 109.47334 * 35.80257 * 20 19 15 38 38 H 1.09000 * 109.46932 * 155.80104 * 20 19 15 39 39 H 1.08998 * 113.61443 * 334.56647 * 21 3 2 40 40 H 1.09002 * 113.61595 * 105.47044 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6108 2.3431 -0.6953 5 6 2.3008 2.3816 1.4076 6 6 3.5206 3.1738 0.9083 7 1 3.2657 4.1352 0.4623 8 6 4.6479 3.2766 1.9376 9 7 4.4202 4.4413 2.7965 10 6 5.2914 4.7319 3.7829 11 8 6.2162 3.9770 4.0199 12 6 5.1252 5.9580 4.5707 13 6 4.0780 6.8499 4.4788 14 6 4.3203 7.8653 5.4092 15 6 5.4901 7.5869 6.0328 16 6 6.1321 8.4266 7.1071 17 8 6.8854 7.5851 7.9826 18 14 4.8100 9.3088 8.0788 19 7 5.9893 6.4305 5.5324 20 6 7.2405 5.7904 5.9458 21 6 3.7283 2.0520 -0.1229 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.4456 3.0090 1.6589 26 1 2.5395 1.6578 2.1870 27 1 4.6665 2.3734 2.5476 28 1 5.6018 3.3866 1.4219 29 1 3.6419 5.0029 2.6558 30 1 3.2294 6.7771 3.8147 31 1 3.6892 8.7220 5.5943 32 1 6.7954 9.1593 6.6477 33 1 7.3275 8.0595 8.6999 34 1 4.0399 10.2111 7.1856 35 1 3.8990 8.3206 8.7103 36 1 8.0734 6.2359 5.4019 37 1 7.3864 5.9354 7.0162 38 1 7.1925 4.7237 5.7268 39 1 4.3572 1.2382 0.2380 40 1 4.0255 2.4134 -1.1074 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:21:40 Heat of formation + Delta-G solvation = 10.793896 kcal Electronic energy + Delta-G solvation = -21527.266111 eV Core-core repulsion = 18243.730456 eV Total energy + Delta-G solvation = -3283.535656 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68632 -40.70268 -39.61953 -37.70164 -35.81215 -33.87823 -31.89485 -29.96241 -29.43812 -27.57151 -26.79210 -26.58002 -24.12904 -23.08502 -21.61721 -20.84391 -20.23035 -18.92650 -18.38579 -17.55082 -17.26141 -16.96173 -16.75805 -16.38110 -16.06491 -15.59339 -15.36203 -15.15929 -14.95558 -14.76186 -14.55272 -14.24428 -14.06271 -13.93573 -13.70024 -13.54287 -13.50226 -13.25527 -13.12218 -12.85313 -12.67142 -11.94063 -11.92403 -11.82296 -11.39469 -11.18970 -10.81498 -10.60278 -10.28141 -9.90483 -9.19726 -8.73718 -4.92919 0.25079 0.75180 1.14408 1.44161 1.61748 1.67729 1.73636 2.09341 2.19893 2.27697 3.17532 3.35030 3.40105 3.57518 3.63196 3.70826 3.75237 3.91048 4.11331 4.21424 4.28252 4.28715 4.29238 4.31350 4.39284 4.48700 4.56598 4.70537 4.72419 4.77264 4.78580 4.83573 4.87003 4.92783 4.97275 5.00319 5.23623 5.40370 5.58774 5.85367 6.01681 6.38007 6.82153 7.02686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.320 6.320 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.120 4.120 6 C -0.104 4.104 7 H 0.125 0.875 8 C 0.136 3.864 9 N -0.701 5.701 10 C 0.585 3.415 11 O -0.586 6.586 12 C -0.082 4.082 13 C -0.125 4.125 14 C -0.232 4.232 15 C 0.047 3.953 16 C -0.064 4.064 17 O -0.566 6.566 18 Si 0.821 3.179 19 N -0.401 5.401 20 C 0.060 3.940 21 C -0.102 4.102 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.417 0.583 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.102 0.898 33 H 0.409 0.591 34 H -0.278 1.278 35 H -0.310 1.310 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 7.052 0.744 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.160 4.160 6 C -0.124 4.124 7 H 0.143 0.857 8 C 0.012 3.988 9 N -0.352 5.352 10 C 0.374 3.626 11 O -0.468 6.468 12 C -0.196 4.196 13 C -0.151 4.151 14 C -0.256 4.256 15 C -0.072 4.072 16 C -0.172 4.172 17 O -0.378 6.378 18 Si 0.724 3.276 19 N -0.073 5.073 20 C -0.080 4.080 21 C -0.141 4.141 22 H 0.121 0.879 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.255 0.745 30 H 0.195 0.805 31 H 0.174 0.826 32 H 0.120 0.880 33 H 0.263 0.737 34 H -0.205 1.205 35 H -0.239 1.239 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.560 5.066 0.629 5.338 hybrid contribution -0.925 0.449 -0.668 1.226 sum -2.484 5.515 -0.039 6.049 Atomic orbital electron populations 1.23370 0.91668 1.07039 1.05738 1.87225 1.10498 1.13638 1.97785 1.24733 1.01258 0.92110 1.01880 0.86187 1.23364 0.98802 0.98924 0.94886 1.22689 0.94369 0.99750 0.95598 0.85715 1.21376 0.98892 0.87436 0.91079 1.45484 1.27115 1.30544 1.32093 1.17151 0.81941 0.83598 0.79883 1.90768 1.34517 1.51799 1.69722 1.20261 0.97157 1.00349 1.01802 1.21637 0.98561 0.93565 1.01337 1.20824 0.97949 1.03699 1.03127 1.20811 0.96810 0.89963 0.99615 1.24830 1.04634 0.95185 0.92582 1.86312 1.69311 1.37582 1.44574 0.94349 0.75469 0.77442 0.80306 1.43985 1.18157 1.17976 1.27223 1.22543 0.82545 0.99128 1.03799 1.22784 0.93090 0.97748 1.00526 0.87931 0.89681 0.89525 0.89275 0.89974 0.92348 0.91621 0.74515 0.80524 0.82628 0.88004 0.73748 1.20514 1.23869 0.90624 0.86492 0.89774 0.89959 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.22 10.76 113.37 1.22 1.44 16 2 S -0.32 -1.04 22.17 -56.49 -1.25 -2.29 16 3 C -0.07 0.18 4.28 31.12 0.13 0.32 16 4 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 5 C -0.12 0.48 7.22 31.12 0.22 0.70 16 6 C -0.10 0.55 3.75 -10.27 -0.04 0.51 16 7 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 8 C 0.14 0.04 5.52 86.38 0.48 0.52 16 9 N -0.70 -0.75 5.54 -467.07 -2.59 -3.34 16 10 C 0.59 5.44 7.77 86.45 0.67 6.11 16 11 O -0.59 -9.66 14.55 -4.36 -0.06 -9.73 16 12 C -0.08 -0.70 6.88 40.35 0.28 -0.43 16 13 C -0.12 -0.47 10.36 22.57 0.23 -0.23 16 14 C -0.23 -1.14 9.37 22.01 0.21 -0.94 16 15 C 0.05 0.28 6.18 41.34 0.26 0.54 16 16 C -0.06 0.11 2.98 71.24 0.21 0.33 16 17 O -0.57 1.55 9.81 -148.98 -1.46 0.09 16 18 Si 0.82 -3.39 31.22 68.60 2.14 -1.25 16 19 N -0.40 -3.70 3.16 -519.72 -1.64 -5.34 16 20 C 0.06 0.45 10.32 127.77 1.32 1.77 16 21 C -0.10 0.31 7.23 31.12 0.23 0.54 16 22 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.08 -0.01 7.85 -2.38 -0.02 -0.03 16 27 H 0.06 0.24 7.84 -2.39 -0.02 0.22 16 28 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.42 -2.12 7.37 -92.71 -0.68 -2.81 16 30 H 0.18 -0.71 7.45 -2.91 -0.02 -0.73 16 31 H 0.16 0.27 6.70 -2.91 -0.02 0.25 16 32 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 33 H 0.41 -5.62 8.74 -74.06 -0.65 -6.26 16 34 H -0.28 0.03 6.87 99.48 0.68 0.72 16 35 H -0.31 -1.73 7.11 99.48 0.71 -1.02 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.12 0.59 5.48 -2.39 -0.01 0.58 16 38 H 0.08 0.96 5.91 -2.39 -0.01 0.95 16 39 H 0.08 0.00 8.06 -2.39 -0.02 -0.01 16 40 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -23.04 339.70 0.29 -22.75 By element: Atomic # 1 Polarization: -11.80 SS G_CDS: -0.26 Total: -12.06 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.42 Total: 11.16 kcal Atomic # 7 Polarization: -4.45 SS G_CDS: -4.23 Total: -8.68 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.52 Total: -9.64 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.14 Total: -1.25 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -1.25 Total: -2.29 kcal Total: -23.04 0.29 -22.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.544 kcal (2) G-P(sol) polarization free energy of solvation -23.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds