Wall clock time and date at job start Sun Mar 7 2021 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 103.00013 * 2 1 4 4 H 1.09004 * 112.84712 * 316.19654 * 3 2 1 5 5 C 1.53963 * 113.66440 * 87.43757 * 3 2 1 6 6 C 1.53783 * 87.01557 * 139.93436 * 5 3 2 7 7 H 1.09003 * 113.61026 * 89.23001 * 6 5 3 8 8 C 1.52996 * 113.61164 * 220.04418 * 6 5 3 9 9 N 1.46500 * 109.47368 * 274.13596 * 8 6 5 10 10 C 1.34780 * 120.00018 * 179.97438 * 9 8 6 11 11 O 1.21649 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.47060 * 119.99871 * 180.02562 * 10 9 8 13 13 C 1.35859 * 125.42451 * 179.97438 * 12 10 9 14 14 C 1.41596 * 107.72943 * 179.75234 * 13 12 10 15 15 C 1.40061 * 133.37758 * 179.54612 * 14 13 12 16 16 C 1.36482 * 119.82613 * 180.42947 * 15 14 13 17 17 C 1.38893 * 120.61641 * 0.23996 * 16 15 14 18 18 C 1.50695 * 119.67678 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47320 * 119.99572 * 18 17 16 20 20 Si 1.86307 * 109.47017 * 359.97438 * 18 17 16 21 21 C 1.37718 * 120.64577 * 0.02562 * 17 16 15 22 22 C 1.39177 * 119.81218 * 0.02562 * 21 17 16 23 23 N 1.37488 * 133.18924 * 180.02562 * 22 21 17 24 24 C 1.53778 * 113.61497 * 184.99623 * 3 2 1 25 25 H 1.08997 * 109.47833 * 299.99679 * 1 2 3 26 26 H 1.09002 * 109.47207 * 60.00381 * 1 2 3 27 27 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 28 28 H 1.08995 * 113.61415 * 25.41729 * 5 3 2 29 29 H 1.08997 * 113.66348 * 254.45981 * 5 3 2 30 30 H 1.09007 * 109.46579 * 154.13978 * 8 6 5 31 31 H 1.09000 * 109.47359 * 34.14356 * 8 6 5 32 32 H 0.97001 * 119.99791 * 0.02562 * 9 8 6 33 33 H 1.08004 * 126.13991 * 0.02562 * 13 12 10 34 34 H 1.08002 * 120.08960 * 0.71702 * 15 14 13 35 35 H 1.07997 * 119.68818 * 180.25396 * 16 15 14 36 36 H 1.08997 * 109.47214 * 239.99775 * 18 17 16 37 37 H 0.96692 * 113.99996 * 179.97438 * 19 18 17 38 38 H 1.48498 * 109.99895 * 298.67927 * 20 18 17 39 39 H 1.48505 * 109.99717 * 60.00022 * 20 18 17 40 40 H 1.08003 * 120.09068 * 179.97438 * 21 17 16 41 41 H 0.96999 * 125.60387 * 0.02562 * 23 22 21 42 42 H 1.09003 * 113.60939 * 105.47696 * 24 3 2 43 43 H 1.08989 * 113.61805 * 334.57047 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 -0.6953 5 6 2.2996 2.3838 1.4088 6 6 3.5205 3.1738 0.9084 7 1 3.2655 4.1352 0.4624 8 6 4.6477 3.2766 1.9378 9 7 4.4008 4.4200 2.8198 10 6 5.2686 4.7067 3.8104 11 8 6.2572 4.0164 3.9717 12 6 5.0205 5.8541 4.6961 13 6 5.8183 6.2416 5.7252 14 6 5.2319 7.3858 6.3184 15 6 5.5917 8.2001 7.3996 16 6 4.7994 9.2554 7.7479 17 6 3.6343 9.5282 7.0427 18 6 2.7748 10.6985 7.4458 19 8 2.6719 11.6129 6.3524 20 14 3.5453 11.5607 8.9066 21 6 3.2563 8.7389 5.9793 22 6 4.0471 7.6563 5.6056 23 7 3.9385 6.7093 4.6148 24 6 3.7283 2.0520 -0.1227 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.5372 1.6609 2.1891 29 1 1.4452 3.0127 1.6588 30 1 5.5986 3.4138 1.4227 31 1 4.6837 2.3621 2.5298 32 1 3.6123 4.9702 2.6914 33 1 6.7376 5.7652 6.0328 34 1 6.4962 7.9963 7.9535 35 1 5.0811 9.8843 8.5794 36 1 1.7808 10.3430 7.7169 37 1 2.1314 12.3921 6.5410 38 1 3.6283 10.6293 10.0602 39 1 4.9013 12.0501 8.5503 40 1 2.3483 8.9589 5.4374 41 1 3.2210 6.6519 3.9646 42 1 4.0255 2.4135 -1.1072 43 1 4.3571 1.2383 0.2382 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:22:51 Heat of formation + Delta-G solvation = 21.660050 kcal Electronic energy + Delta-G solvation = -24866.380451 eV Core-core repulsion = 21198.637566 eV Total energy + Delta-G solvation = -3667.742885 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.81775 -40.91323 -39.79908 -38.87143 -37.01156 -35.80376 -33.44600 -31.57628 -30.56358 -29.98573 -29.49842 -26.87328 -26.71552 -24.78626 -23.79713 -23.05414 -22.04498 -21.45656 -20.62081 -19.64097 -18.38303 -18.03593 -17.83054 -17.22261 -16.99038 -16.83818 -16.48761 -16.32565 -15.62943 -15.51451 -15.17769 -15.12290 -14.86149 -14.75706 -14.73175 -14.43943 -14.24727 -14.09343 -14.03882 -13.54741 -13.51376 -13.43231 -12.90536 -12.76535 -12.35853 -12.24639 -12.01002 -11.89615 -11.86636 -11.42439 -11.39938 -11.07592 -10.81984 -10.38447 -10.26053 -9.46447 -8.94184 -8.73955 -4.90078 -0.48695 0.34033 0.74956 0.84066 1.33079 1.61318 1.65611 1.68741 1.89754 2.03423 2.09340 2.60248 3.31354 3.37586 3.41491 3.49303 3.55782 3.63016 3.73404 3.82161 3.85901 4.08655 4.12637 4.21008 4.27870 4.28580 4.29385 4.31731 4.35248 4.55037 4.57480 4.69917 4.71991 4.76145 4.77771 4.83358 4.85224 4.91046 4.98281 5.10449 5.18746 5.23424 5.37046 5.38344 5.43941 5.82059 6.17333 6.35894 6.88013 6.94236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.319 6.319 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.119 4.119 6 C -0.104 4.104 7 H 0.124 0.876 8 C 0.131 3.869 9 N -0.707 5.707 10 C 0.585 3.415 11 O -0.561 6.561 12 C 0.017 3.983 13 C -0.120 4.120 14 C -0.137 4.137 15 C -0.060 4.060 16 C -0.167 4.167 17 C -0.062 4.062 18 C -0.073 4.073 19 O -0.563 6.563 20 Si 0.772 3.228 21 C -0.100 4.100 22 C 0.111 3.889 23 N -0.558 5.558 24 C -0.103 4.103 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.413 0.587 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.404 0.596 38 H -0.289 1.289 39 H -0.300 1.300 40 H 0.149 0.851 41 H 0.435 0.565 42 H 0.092 0.908 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 5.365 -1.366 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.159 4.159 6 C -0.125 4.125 7 H 0.142 0.858 8 C 0.008 3.992 9 N -0.359 5.359 10 C 0.372 3.628 11 O -0.439 6.439 12 C -0.093 4.093 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.079 4.079 16 C -0.186 4.186 17 C -0.064 4.064 18 C -0.183 4.183 19 O -0.373 6.373 20 Si 0.679 3.321 21 C -0.121 4.121 22 C 0.000 4.000 23 N -0.164 5.164 24 C -0.142 4.142 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.256 0.744 38 H -0.217 1.217 39 H -0.229 1.229 40 H 0.166 0.834 41 H 0.276 0.724 42 H 0.110 0.890 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.637 3.423 -1.184 7.561 hybrid contribution -1.110 0.360 -0.575 1.301 sum -7.747 3.782 -1.759 8.799 Atomic orbital electron populations 1.23368 0.91703 1.07033 1.05733 1.87251 1.10453 1.13625 1.97777 1.24776 1.01248 0.92128 1.01992 0.86301 1.23400 0.98718 0.98941 0.94843 1.22692 0.94413 0.99724 0.95633 0.85775 1.21441 0.98977 0.87970 0.90849 1.45710 1.26326 1.32251 1.31564 1.17235 0.82902 0.82570 0.80143 1.90872 1.29662 1.51188 1.72167 1.19981 0.92181 0.95753 1.01360 1.21080 1.00994 0.96626 0.96041 1.18380 0.97122 0.98935 0.99694 1.20528 0.99523 0.93086 0.94734 1.20506 0.96308 0.99855 1.01885 1.19427 0.95011 0.96065 0.95897 1.24749 1.03397 0.91550 0.98646 1.86438 1.75990 1.36692 1.38152 0.94575 0.79978 0.83677 0.73868 1.20037 1.00810 0.92937 0.98281 1.18421 0.96965 0.93046 0.91582 1.41730 1.22153 1.23793 1.28769 1.22780 0.93107 0.97819 1.00541 0.89608 0.89583 0.87981 0.89806 0.89169 0.91301 0.91851 0.75041 0.82701 0.84006 0.86344 0.88201 0.74439 1.21696 1.22869 0.83366 0.72403 0.88950 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.61 22.18 -56.49 -1.25 -1.86 16 3 C -0.07 0.31 4.28 31.18 0.13 0.44 16 4 H 0.12 -0.79 8.14 -2.38 -0.02 -0.81 16 5 C -0.12 0.77 7.24 31.18 0.23 1.00 16 6 C -0.10 0.82 3.75 -10.27 -0.04 0.78 16 7 H 0.12 -1.46 8.14 -2.39 -0.02 -1.48 16 8 C 0.13 -0.36 5.50 86.38 0.47 0.12 16 9 N -0.71 2.21 5.55 -466.71 -2.59 -0.38 16 10 C 0.58 2.96 7.80 86.56 0.68 3.63 16 11 O -0.56 -7.75 16.84 -4.18 -0.07 -7.82 16 12 C 0.02 0.07 6.96 39.91 0.28 0.35 16 13 C -0.12 -0.86 10.53 22.55 0.24 -0.63 16 14 C -0.14 -0.97 6.16 -21.36 -0.13 -1.10 16 15 C -0.06 -0.38 10.06 22.30 0.22 -0.15 16 16 C -0.17 -1.02 8.59 22.02 0.19 -0.83 16 17 C -0.06 -0.25 5.43 -19.83 -0.11 -0.36 16 18 C -0.07 0.15 2.80 71.23 0.20 0.35 16 19 O -0.56 1.25 12.73 -148.98 -1.90 -0.64 16 20 Si 0.77 -1.84 29.75 68.60 2.04 0.20 16 21 C -0.10 -0.25 9.61 22.37 0.22 -0.04 16 22 C 0.11 0.43 7.25 39.13 0.28 0.71 16 23 N -0.56 0.59 6.07 -177.19 -1.08 -0.49 16 24 C -0.10 0.49 7.23 31.12 0.23 0.72 16 25 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.08 -0.24 7.88 -2.39 -0.02 -0.26 16 29 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 31 H 0.06 0.05 7.87 -2.39 -0.02 0.03 16 32 H 0.41 -4.13 7.53 -92.71 -0.70 -4.83 16 33 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 34 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.12 0.62 4.82 -2.91 -0.01 0.61 16 36 H 0.10 -0.67 7.96 -2.39 -0.02 -0.69 16 37 H 0.40 -5.15 8.74 -74.06 -0.65 -5.80 16 38 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 39 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 40 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 41 H 0.43 -3.88 8.12 -92.71 -0.75 -4.63 16 42 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.08 -0.13 8.06 -2.39 -0.02 -0.15 16 Total: 0.00 -23.93 371.59 -1.54 -25.47 By element: Atomic # 1 Polarization: -20.06 SS G_CDS: -1.00 Total: -21.06 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.30 Total: 6.57 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -3.67 Total: -0.87 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -1.97 Total: -8.46 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.04 Total: 0.20 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.25 Total: -1.86 kcal Total: -23.93 -1.54 -25.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.135 kcal (2) G-P(sol) polarization free energy of solvation -23.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds