Wall clock time and date at job start Sun Mar 7 2021 14:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 102.99916 * 2 1 4 4 H 1.09003 * 112.84796 * 316.19468 * 3 2 1 5 5 C 1.53781 * 113.61611 * 87.50068 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.97710 * 5 3 2 7 7 H 1.09000 * 113.61076 * 89.06984 * 6 5 3 8 8 C 1.52990 * 113.70090 * 220.05426 * 6 5 3 9 9 N 1.46497 * 109.47171 * 272.42414 * 8 6 5 10 10 C 1.34777 * 120.00242 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.99937 * 179.97438 * 10 9 8 13 13 C 1.53045 * 109.32499 * 180.86462 * 12 10 9 14 14 C 1.53566 * 108.54523 * 190.15661 * 13 12 10 15 15 N 1.47031 * 107.64358 * 60.98040 * 14 13 12 16 16 C 1.38921 * 118.88536 * 316.31917 * 15 14 13 17 17 C 1.31120 * 121.84589 * 13.29260 * 16 15 14 18 18 C 1.50701 * 118.54833 * 179.61520 * 17 16 15 19 19 O 1.42905 * 109.46906 * 110.02148 * 18 17 16 20 20 Si 1.86300 * 109.46915 * 350.02692 * 18 17 16 21 21 C 1.53781 * 113.61536 * 184.99878 * 3 2 1 22 22 H 1.08990 * 109.47508 * 299.99870 * 1 2 3 23 23 H 1.09000 * 109.47049 * 60.00239 * 1 2 3 24 24 H 1.09008 * 109.46776 * 180.02562 * 1 2 3 25 25 H 1.09005 * 113.61471 * 254.53293 * 5 3 2 26 26 H 1.08996 * 113.61178 * 25.34635 * 5 3 2 27 27 H 1.09007 * 109.47036 * 32.41747 * 8 6 5 28 28 H 1.08994 * 109.47734 * 152.42153 * 8 6 5 29 29 H 0.97003 * 120.00176 * 359.97438 * 9 8 6 30 30 H 1.09000 * 109.32905 * 300.34362 * 12 10 9 31 31 H 1.08997 * 109.62269 * 309.89198 * 13 12 10 32 32 H 1.08999 * 109.62266 * 70.45499 * 13 12 10 33 33 H 1.08994 * 109.83912 * 301.43528 * 14 13 12 34 34 H 1.09001 * 109.81368 * 180.50337 * 14 13 12 35 35 H 0.97002 * 120.55999 * 136.34212 * 15 14 13 36 36 H 1.08000 * 119.08014 * 193.32106 * 16 15 14 37 37 H 1.08994 * 109.47498 * 230.02558 * 18 17 16 38 38 H 0.96694 * 114.00367 * 300.00631 * 19 18 17 39 39 H 1.48506 * 109.99940 * 58.68099 * 20 18 17 40 40 H 1.48505 * 109.99906 * 179.97438 * 20 18 17 41 41 H 1.09002 * 113.61445 * 334.56785 * 21 3 2 42 42 H 1.09002 * 113.61408 * 105.38516 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3429 -0.6953 5 6 2.3008 2.3816 1.4077 6 6 3.5227 3.1751 0.9075 7 1 3.2664 4.1357 0.4607 8 6 4.6515 3.2784 1.9350 9 7 4.4257 4.4441 2.7930 10 6 5.2986 4.7353 3.7777 11 8 6.2713 4.0324 3.9533 12 6 5.0666 5.9349 4.6600 13 6 6.2083 6.0470 5.6730 14 6 5.8323 7.1083 6.7173 15 7 4.6057 6.6562 7.3903 16 6 3.5753 6.1272 6.6232 17 6 3.7521 5.7827 5.3705 18 6 2.5848 5.2079 4.6101 19 8 2.1470 6.1484 3.6273 20 14 1.1897 4.8498 5.7918 21 6 3.7283 2.0520 -0.1228 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.4455 3.0090 1.6588 26 1 2.5379 1.6576 2.1872 27 1 4.6704 2.3758 2.5460 28 1 5.6048 3.3870 1.4179 29 1 3.6480 5.0065 2.6523 30 1 5.0428 6.8351 4.0459 31 1 6.3571 5.0857 6.1647 32 1 7.1235 6.3452 5.1615 33 1 5.6531 8.0642 6.2252 34 1 6.6368 7.2115 7.4454 35 1 4.5173 6.7265 8.3537 36 1 2.6013 5.9965 7.0711 37 1 2.8906 4.2844 4.1185 38 1 1.8593 6.9955 3.9941 39 1 0.7847 6.0953 6.4918 40 1 0.0321 4.2831 5.0541 41 1 4.3572 1.2382 0.2382 42 1 4.0258 2.4120 -1.1077 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_15608500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:23:47 Heat of formation + Delta-G solvation = -12.149689 kcal Electronic energy + Delta-G solvation = -23202.572270 eV Core-core repulsion = 19890.730227 eV Total energy + Delta-G solvation = -3311.842043 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59838 -40.05305 -39.08850 -37.73212 -35.45375 -33.48547 -32.70219 -29.97884 -29.44584 -27.21510 -26.71530 -25.83416 -23.80876 -23.22118 -21.78152 -20.59929 -19.34469 -18.97658 -18.21573 -17.55777 -17.25642 -17.00458 -16.58494 -16.47307 -15.95077 -15.59724 -15.28127 -15.23692 -14.78737 -14.73314 -14.55081 -14.31847 -14.07228 -14.01214 -13.68513 -13.51241 -13.43778 -13.15148 -12.81120 -12.63605 -12.27283 -11.95570 -11.92161 -11.80340 -11.63616 -11.37202 -11.35267 -10.85853 -10.71600 -10.42714 -9.92766 -8.71693 -8.44924 -4.88456 0.76097 1.24453 1.35685 1.55429 1.62196 1.73479 1.96531 2.30880 2.66865 3.37298 3.39182 3.45740 3.61799 3.68795 3.77457 3.86306 3.99957 4.15824 4.23047 4.28468 4.30203 4.32066 4.34363 4.39700 4.60741 4.61449 4.68646 4.73423 4.75341 4.79832 4.80728 4.84124 4.87278 4.95679 5.02767 5.21231 5.28439 5.33958 5.44842 5.51980 6.30976 6.51248 6.70348 6.96931 7.28698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.310 6.310 3 C -0.073 4.073 4 H 0.115 0.885 5 C -0.119 4.119 6 C -0.106 4.106 7 H 0.112 0.888 8 C 0.127 3.873 9 N -0.720 5.720 10 C 0.519 3.481 11 O -0.585 6.585 12 C -0.033 4.033 13 C -0.120 4.120 14 C 0.123 3.877 15 N -0.744 5.744 16 C 0.160 3.840 17 C -0.295 4.295 18 C -0.073 4.073 19 O -0.549 6.549 20 Si 0.737 3.263 21 C -0.100 4.100 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.419 0.581 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.389 0.611 39 H -0.273 1.273 40 H -0.303 1.303 41 H 0.086 0.914 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 4.625 3.118 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.081 6.081 3 C -0.201 4.201 4 H 0.133 0.867 5 C -0.159 4.159 6 C -0.127 4.127 7 H 0.130 0.870 8 C 0.003 3.997 9 N -0.376 5.376 10 C 0.307 3.693 11 O -0.466 6.466 12 C -0.054 4.054 13 C -0.159 4.159 14 C -0.002 4.002 15 N -0.375 5.375 16 C 0.037 3.963 17 C -0.306 4.306 18 C -0.184 4.184 19 O -0.358 6.358 20 Si 0.643 3.357 21 C -0.139 4.139 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.261 0.739 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.250 0.750 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.239 0.761 39 H -0.199 1.199 40 H -0.231 1.231 41 H 0.104 0.896 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.522 2.959 2.953 4.882 hybrid contribution -1.222 2.032 -0.517 2.427 sum -3.745 4.991 2.436 6.698 Atomic orbital electron populations 1.23377 0.91923 1.07094 1.05618 1.87138 1.10197 1.13032 1.97770 1.24700 1.01279 0.92422 1.01700 0.86684 1.23406 0.98500 0.98852 0.95149 1.22691 0.94791 0.99193 0.96005 0.87018 1.21325 0.98231 0.88532 0.91578 1.46559 1.28202 1.30068 1.32808 1.21015 0.81417 0.86333 0.80526 1.90679 1.31056 1.52955 1.71878 1.19653 0.94528 0.95606 0.95655 1.21701 0.96966 1.00318 0.96896 1.21673 0.87190 0.95824 0.95502 1.44682 1.15407 1.68010 1.09355 1.20700 0.92472 0.91797 0.91379 1.20387 0.95650 1.17656 0.96881 1.25085 1.00602 0.94893 0.97780 1.86376 1.85300 1.28671 1.35436 0.94202 0.76060 0.83938 0.81524 1.22770 0.93026 0.97761 1.00382 0.89814 0.89711 0.87702 0.90203 0.89215 0.92062 0.92176 0.73930 0.88158 0.92127 0.90648 0.91396 0.88246 0.74956 0.83534 0.86922 0.76093 1.19919 1.23129 0.89573 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.12 10.76 113.37 1.22 1.34 16 2 S -0.31 -1.21 22.17 -56.49 -1.25 -2.46 16 3 C -0.07 0.04 4.28 31.12 0.13 0.17 16 4 H 0.12 -0.28 8.14 -2.39 -0.02 -0.29 16 5 C -0.12 0.17 7.23 31.21 0.23 0.39 16 6 C -0.11 0.22 3.76 -10.18 -0.04 0.18 16 7 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 8 C 0.13 0.30 5.52 86.38 0.48 0.78 16 9 N -0.72 -1.92 3.86 -463.07 -1.79 -3.70 16 10 C 0.52 3.61 6.82 87.66 0.60 4.20 16 11 O -0.59 -8.89 15.80 -3.03 -0.05 -8.94 16 12 C -0.03 -0.05 2.74 -12.43 -0.03 -0.08 16 13 C -0.12 -0.13 4.92 30.80 0.15 0.02 16 14 C 0.12 -0.58 7.16 86.47 0.62 0.04 16 15 N -0.74 4.09 5.83 -345.86 -2.02 2.07 16 16 C 0.16 -0.65 9.61 83.41 0.80 0.16 16 17 C -0.29 0.49 5.03 -16.76 -0.08 0.40 16 18 C -0.07 0.17 1.69 71.24 0.12 0.29 16 19 O -0.55 1.69 11.40 -148.98 -1.70 -0.01 16 20 Si 0.74 -2.43 29.96 68.60 2.06 -0.37 16 21 C -0.10 0.11 7.22 31.12 0.22 0.33 16 22 H 0.08 -0.19 8.14 -2.40 -0.02 -0.21 16 23 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 26 H 0.09 0.06 7.87 -2.39 -0.02 0.04 16 27 H 0.06 0.29 7.85 -2.38 -0.02 0.27 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.42 0.06 5.09 -92.71 -0.47 -0.41 16 30 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.35 7.75 -2.39 -0.02 0.33 16 32 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.41 -3.92 8.96 -92.71 -0.83 -4.75 16 36 H 0.15 -1.05 4.31 -2.91 -0.01 -1.07 16 37 H 0.11 -0.04 5.33 -2.39 -0.01 -0.06 16 38 H 0.39 -3.20 8.70 -74.06 -0.64 -3.85 16 39 H -0.27 0.38 6.83 99.48 0.68 1.06 16 40 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 41 H 0.09 0.10 8.06 -2.39 -0.02 0.08 16 42 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -15.74 341.32 -1.23 -16.97 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.89 Total: -11.80 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 4.41 Total: 8.23 kcal Atomic # 7 Polarization: 2.17 SS G_CDS: -3.80 Total: -1.63 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -1.75 Total: -8.94 kcal Atomic # 14 Polarization: -2.43 SS G_CDS: 2.06 Total: -0.37 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.25 Total: -2.46 kcal Total: -15.74 -1.23 -16.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_15608500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -15.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds