Wall clock time and date at job start Sun Mar 7 2021 14:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 102.99916 * 2 1 4 4 H 1.08999 * 112.90681 * 316.25216 * 3 2 1 5 5 C 1.53781 * 113.61611 * 87.50068 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.97710 * 5 3 2 7 7 H 1.09000 * 113.61076 * 89.06984 * 6 5 3 8 8 C 1.52990 * 113.70090 * 220.05426 * 6 5 3 9 9 N 1.46497 * 109.47171 * 272.42414 * 8 6 5 10 10 C 1.34777 * 120.00242 * 179.97438 * 9 8 6 11 11 O 1.21624 * 120.00037 * 0.02562 * 10 9 8 12 12 C 1.47263 * 120.00123 * 179.97438 * 10 9 8 13 13 C 1.36333 * 126.96782 * 180.02562 * 12 10 9 14 14 C 1.50992 * 126.79475 * 359.97438 * 13 12 10 15 15 C 1.53419 * 108.24382 * 164.26710 * 14 13 12 16 16 C 1.53154 * 109.02539 * 48.51040 * 15 14 13 17 17 C 1.53132 * 109.52490 * 290.40368 * 16 15 14 18 18 N 1.35218 * 108.66140 * 179.97438 * 13 12 10 19 19 C 1.36426 * 109.89577 * 359.97438 * 18 13 12 20 20 C 1.50699 * 125.49217 * 179.97438 * 19 18 13 21 21 O 1.42908 * 109.47437 * 29.99118 * 20 19 18 22 22 Si 1.86296 * 109.47401 * 149.99186 * 20 19 18 23 23 C 1.34498 * 109.01311 * 359.75539 * 19 18 13 24 24 C 1.53781 * 113.61536 * 184.99878 * 3 2 1 25 25 H 1.09008 * 109.46776 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47508 * 299.99870 * 1 2 3 27 27 H 1.09000 * 109.47049 * 60.00239 * 1 2 3 28 28 H 1.09005 * 113.61471 * 254.53293 * 5 3 2 29 29 H 1.08996 * 113.61178 * 25.34635 * 5 3 2 30 30 H 1.09007 * 109.47036 * 32.41747 * 8 6 5 31 31 H 1.08994 * 109.47734 * 152.42153 * 8 6 5 32 32 H 0.97003 * 120.00176 * 359.97438 * 9 8 6 33 33 H 1.09002 * 109.70939 * 284.02264 * 14 13 12 34 34 H 1.09006 * 109.70638 * 44.64610 * 14 13 12 35 35 H 1.08998 * 109.57142 * 288.63446 * 15 14 13 36 36 H 1.09003 * 109.60469 * 168.40910 * 15 14 13 37 37 H 1.08998 * 109.46339 * 170.39232 * 16 15 14 38 38 H 1.08996 * 109.46497 * 50.41954 * 16 15 14 39 39 H 1.09000 * 109.56836 * 291.17435 * 17 16 15 40 40 H 1.09009 * 109.65851 * 170.88619 * 17 16 15 41 41 H 1.08998 * 109.47233 * 269.99411 * 20 19 18 42 42 H 0.96701 * 113.99343 * 60.00396 * 21 20 19 43 43 H 1.48501 * 109.99961 * 58.67850 * 22 20 19 44 44 H 1.48496 * 110.00336 * 179.97438 * 22 20 19 45 45 H 1.07998 * 126.81365 * 180.24762 * 23 19 18 46 46 H 1.09002 * 113.61445 * 334.56785 * 24 3 2 47 47 H 1.09002 * 113.61408 * 105.38516 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3440 -0.6943 5 6 2.3008 2.3816 1.4077 6 6 3.5227 3.1751 0.9075 7 1 3.2664 4.1357 0.4607 8 6 4.6515 3.2784 1.9350 9 7 4.4257 4.4441 2.7930 10 6 5.2986 4.7353 3.7777 11 8 6.2740 4.0305 3.9538 12 6 5.0719 5.9075 4.6398 13 6 5.8574 6.3315 5.6704 14 6 7.1354 5.6908 6.1563 15 6 7.8707 6.7010 7.0466 16 6 6.8835 7.2816 8.0635 17 6 5.8760 8.1815 7.3423 18 7 5.3046 7.4428 6.2069 19 6 4.1579 7.7596 5.5391 20 6 3.2620 8.9318 5.8463 21 8 4.0428 9.9992 6.3879 22 14 2.4292 9.5039 4.2811 23 6 3.9585 6.8600 4.5594 24 6 3.7283 2.0520 -0.1228 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.4455 3.0090 1.6588 29 1 2.5379 1.6576 2.1872 30 1 4.6704 2.3758 2.5460 31 1 5.6048 3.3870 1.4179 32 1 3.6480 5.0065 2.6523 33 1 6.9020 4.7945 6.7309 34 1 7.7624 5.4289 5.3039 35 1 8.2745 7.5045 6.4307 36 1 8.6840 6.2009 7.5725 37 1 7.4277 7.8669 8.8046 38 1 6.3538 6.4688 8.5603 39 1 6.3808 9.0764 6.9786 40 1 5.0799 8.4657 8.0306 41 1 2.5057 8.6309 6.5712 42 1 4.7372 10.3184 5.7954 43 1 1.6395 8.3935 3.6909 44 1 1.5423 10.6593 4.5707 45 1 3.1400 6.8409 3.8551 46 1 4.3572 1.2382 0.2382 47 1 4.0258 2.4120 -1.1077 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_16915396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:23:51 Heat of formation + Delta-G solvation = -6.962607 kcal Electronic energy + Delta-G solvation = -27126.592428 eV Core-core repulsion = 23402.985414 eV Total energy + Delta-G solvation = -3723.607014 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.75170 -40.52962 -39.41621 -38.04123 -36.88696 -35.22007 -33.46181 -31.21535 -30.29262 -29.84529 -28.66839 -26.79638 -26.56839 -24.66149 -24.54809 -23.10333 -21.74530 -21.20422 -20.48878 -19.64580 -18.90185 -17.57527 -17.17320 -17.01379 -16.81569 -16.50758 -16.35569 -15.95187 -15.79244 -15.42522 -15.20276 -15.15811 -15.09101 -14.87189 -14.60575 -14.49411 -14.35829 -14.11103 -14.03681 -13.91135 -13.54515 -13.44219 -13.25514 -12.76929 -12.69338 -12.36774 -12.14901 -12.05603 -11.94920 -11.89461 -11.80549 -11.73989 -11.40591 -10.81477 -10.79762 -10.59549 -9.90757 -9.52848 -8.98211 -8.61851 -5.09614 0.75823 0.88589 1.00278 1.35752 1.55843 1.60974 1.75008 1.96246 2.49533 2.75716 3.17164 3.34992 3.40167 3.43545 3.52529 3.58798 3.63709 3.72635 3.77061 3.78560 4.09200 4.19186 4.21807 4.22500 4.24037 4.30907 4.33990 4.38177 4.40061 4.56129 4.61723 4.67527 4.68820 4.72867 4.74780 4.76328 4.81055 4.82308 4.88100 4.96137 5.02086 5.06387 5.16743 5.21125 5.31545 5.64154 5.77274 6.06657 6.23258 6.33783 6.76815 7.55236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.255 6.255 3 C -0.084 4.084 4 H 0.105 0.895 5 C -0.123 4.123 6 C -0.120 4.120 7 H 0.101 0.899 8 C 0.134 3.866 9 N -0.728 5.728 10 C 0.593 3.407 11 O -0.549 6.549 12 C -0.233 4.233 13 C 0.121 3.879 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.140 4.140 17 C 0.108 3.892 18 N -0.426 5.426 19 C -0.010 4.010 20 C -0.045 4.045 21 O -0.544 6.544 22 Si 0.717 3.283 23 C -0.169 4.169 24 C -0.100 4.100 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.379 0.621 43 H -0.253 1.253 44 H -0.253 1.253 45 H 0.146 0.854 46 H 0.095 0.905 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 4.650 -0.713 4.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.212 4.212 4 H 0.123 0.877 5 C -0.163 4.163 6 C -0.141 4.141 7 H 0.119 0.881 8 C 0.010 3.990 9 N -0.379 5.379 10 C 0.382 3.618 11 O -0.428 6.428 12 C -0.243 4.243 13 C 0.003 3.997 14 C -0.093 4.093 15 C -0.166 4.166 16 C -0.178 4.178 17 C -0.012 4.012 18 N -0.102 5.102 19 C -0.119 4.119 20 C -0.155 4.155 21 O -0.349 6.349 22 Si 0.617 3.383 23 C -0.194 4.194 24 C -0.139 4.139 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.227 0.773 43 H -0.178 1.178 44 H -0.178 1.178 45 H 0.164 0.836 46 H 0.114 0.886 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.645 3.479 -0.239 3.547 hybrid contribution -1.484 0.892 0.416 1.780 sum -2.129 4.371 0.177 4.865 Atomic orbital electron populations 1.23366 0.94217 1.06585 1.04898 1.86983 1.07476 1.10516 1.97635 1.24681 1.01132 0.94170 1.01267 0.87661 1.23458 0.98169 0.99124 0.95525 1.22800 0.95744 0.98800 0.96732 0.88131 1.21297 0.97830 0.88680 0.91193 1.45729 1.27903 1.30248 1.34050 1.17307 0.81939 0.83311 0.79239 1.90772 1.29355 1.51447 1.71216 1.19827 1.00261 1.01064 1.03123 1.20383 0.96411 0.88319 0.94573 1.20522 0.90942 0.97351 1.00524 1.21726 0.98164 0.99226 0.97498 1.21948 0.97169 1.00031 0.98627 1.22122 0.97692 0.94608 0.86801 1.43858 1.18939 1.21504 1.25937 1.20668 0.91774 1.01439 0.98025 1.24870 0.96041 0.84755 1.09869 1.86488 1.50624 1.51314 1.46468 0.94100 0.83069 0.81356 0.79789 1.21729 1.00178 0.96519 1.00926 1.22759 0.93241 0.98000 0.99911 0.88101 0.90462 0.90520 0.90951 0.88432 0.91100 0.91095 0.76687 0.89405 0.88127 0.91208 0.90205 0.89296 0.90782 0.89630 0.88636 0.86687 0.77332 1.17756 1.17761 0.83631 0.88624 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.09 10.76 101.05 1.09 1.17 16 2 S -0.25 -0.36 22.17 -107.50 -2.38 -2.75 16 3 C -0.08 0.07 4.28 -25.92 -0.11 -0.04 16 4 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 5 C -0.12 0.17 7.23 -25.78 -0.19 -0.02 16 6 C -0.12 0.23 3.76 -89.67 -0.34 -0.11 16 7 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 8 C 0.13 0.03 5.52 -4.05 -0.02 0.01 16 9 N -0.73 -0.53 5.55 -61.44 -0.34 -0.88 16 10 C 0.59 2.23 7.81 -12.59 -0.10 2.13 16 11 O -0.55 -3.77 15.33 5.26 0.08 -3.69 16 12 C -0.23 -0.63 6.28 -103.48 -0.65 -1.28 16 13 C 0.12 0.26 6.57 -81.64 -0.54 -0.27 16 14 C -0.06 -0.07 5.32 -27.52 -0.15 -0.22 16 15 C -0.13 0.16 5.98 -26.43 -0.16 0.00 16 16 C -0.14 0.27 5.92 -26.58 -0.16 0.11 16 17 C 0.11 -0.16 5.32 -3.69 -0.02 -0.18 16 18 N -0.43 -0.24 3.11 -107.37 -0.33 -0.57 16 19 C -0.01 0.00 6.15 -81.87 -0.50 -0.51 16 20 C -0.04 0.06 2.99 36.01 0.11 0.16 16 21 O -0.54 0.87 10.68 -35.23 -0.38 0.50 16 22 Si 0.72 -1.61 31.28 -169.99 -5.32 -6.93 16 23 C -0.17 -0.11 9.09 -37.47 -0.34 -0.45 16 24 C -0.10 0.12 7.22 -25.92 -0.19 -0.06 16 25 H 0.10 -0.11 8.14 -51.92 -0.42 -0.54 16 26 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.08 -0.11 8.14 -51.92 -0.42 -0.53 16 28 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 29 H 0.10 -0.01 7.87 -51.93 -0.41 -0.42 16 30 H 0.07 0.11 7.85 -51.93 -0.41 -0.30 16 31 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.40 -0.57 7.60 -40.82 -0.31 -0.88 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 0.24 7.40 -51.93 -0.38 -0.14 16 35 H 0.07 -0.09 8.12 -51.93 -0.42 -0.51 16 36 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 37 H 0.09 -0.29 8.14 -51.93 -0.42 -0.72 16 38 H 0.07 -0.08 8.11 -51.93 -0.42 -0.50 16 39 H 0.09 -0.24 7.94 -51.93 -0.41 -0.66 16 40 H 0.10 -0.12 7.68 -51.92 -0.40 -0.51 16 41 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 42 H 0.38 -1.83 8.63 45.56 0.39 -1.44 16 43 H -0.25 0.13 6.77 56.52 0.38 0.51 16 44 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 45 H 0.15 -0.18 6.29 -52.49 -0.33 -0.51 16 46 H 0.10 -0.03 8.06 -51.93 -0.42 -0.45 16 47 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 LS Contribution 385.29 15.07 5.81 5.81 Total: 0.00 -7.21 385.29 -12.93 -20.14 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: -7.80 Total: -12.06 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.26 Total: 0.44 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -0.68 Total: -1.45 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.30 Total: -3.20 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.32 Total: -6.93 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.38 Total: -2.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -7.21 -12.93 -20.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_16915396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.174 kcal (2) G-P(sol) polarization free energy of solvation -7.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds