Wall clock time and date at job start Sun Mar 7 2021 14:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00067 * 2 1 4 4 H 1.09000 * 112.90991 * 43.75060 * 3 2 1 5 5 C 1.53786 * 113.61571 * 174.99869 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02404 * 5 3 2 7 7 H 1.09003 * 113.61462 * 89.16045 * 6 5 3 8 8 C 1.52991 * 113.61529 * 219.97788 * 6 5 3 9 9 N 1.46508 * 109.47429 * 184.99923 * 8 6 5 10 10 C 1.34777 * 120.00013 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00116 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99720 * 180.02562 * 10 9 8 13 13 O 1.42897 * 109.47008 * 179.97438 * 12 10 9 14 14 C 1.35904 * 117.00158 * 180.02562 * 13 12 10 15 15 C 1.38738 * 120.05209 * 359.72907 * 14 13 12 16 16 C 1.38148 * 119.94208 * 179.74755 * 15 14 13 17 17 C 1.38265 * 120.05241 * 0.50481 * 16 15 14 18 18 C 1.50705 * 119.94198 * 179.74870 * 17 16 15 19 19 O 1.42900 * 109.47151 * 245.02086 * 18 17 16 20 20 Si 1.86296 * 109.47001 * 5.01875 * 18 17 16 21 21 C 1.38263 * 120.11514 * 359.76263 * 17 16 15 22 22 C 1.38140 * 120.05501 * 359.97438 * 21 17 16 23 23 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 24 24 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46955 * 300.00272 * 1 2 3 26 26 H 1.09004 * 109.46830 * 59.99795 * 1 2 3 27 27 H 1.09002 * 113.61357 * 25.43320 * 5 3 2 28 28 H 1.09002 * 113.61608 * 254.61482 * 5 3 2 29 29 H 1.08997 * 109.47550 * 304.99814 * 8 6 5 30 30 H 1.09002 * 109.47334 * 65.00084 * 8 6 5 31 31 H 0.96996 * 119.99136 * 0.02562 * 9 8 6 32 32 H 1.08993 * 109.47235 * 299.99988 * 12 10 9 33 33 H 1.09005 * 109.47230 * 60.00102 * 12 10 9 34 34 H 1.07999 * 120.02705 * 359.97438 * 15 14 13 35 35 H 1.07996 * 119.97056 * 180.22267 * 16 15 14 36 36 H 1.09001 * 109.47254 * 125.01696 * 18 17 16 37 37 H 0.96697 * 113.99809 * 180.02562 * 19 18 17 38 38 H 1.48506 * 110.00066 * 178.68243 * 20 18 17 39 39 H 1.48498 * 110.00080 * 300.00015 * 20 18 17 40 40 H 1.08003 * 119.97263 * 179.97438 * 21 17 16 41 41 H 1.08006 * 120.02994 * 179.97438 * 22 21 17 42 42 H 1.09005 * 113.61471 * 139.98321 * 23 6 5 43 43 H 1.08996 * 113.61178 * 270.79663 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3441 0.6943 5 6 3.7284 2.0520 0.1228 6 6 3.5229 3.1750 -0.9074 7 1 3.2680 4.1361 -0.4606 8 6 4.6516 3.2783 -1.9349 9 7 4.4259 4.4441 -2.7930 10 6 5.2989 4.7352 -3.7777 11 8 6.2715 4.0322 -3.9533 12 6 5.0670 5.9347 -4.6599 13 8 6.1212 6.0310 -5.6197 14 6 6.0632 7.0664 -6.4982 15 6 5.0101 7.9678 -6.4411 16 6 4.9562 9.0224 -7.3318 17 6 5.9451 9.1740 -8.2862 18 6 5.8808 10.3221 -9.2602 19 8 5.7027 9.8143 -10.5840 20 14 4.4478 11.4289 -8.8217 21 6 6.9927 8.2738 -8.3487 22 6 7.0541 7.2207 -7.4568 23 6 2.3033 2.3842 -1.4093 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.3573 1.2381 -0.2381 28 1 4.0259 2.4120 1.1077 29 1 5.6050 3.3869 -1.4178 30 1 4.6705 2.3757 -2.5458 31 1 3.6482 5.0064 -2.6522 32 1 4.1134 5.8267 -5.1767 33 1 5.0489 6.8372 -4.0488 34 1 4.2352 7.8472 -5.6986 35 1 4.1386 9.7264 -7.2855 36 1 6.8085 10.8924 -9.2115 37 1 5.6530 10.4994 -11.2647 38 1 4.3925 12.5823 -9.7556 39 1 3.1770 10.6633 -8.8844 40 1 7.7637 8.3941 -9.0954 41 1 7.8724 6.5175 -7.5063 42 1 1.4488 3.0125 -1.6610 43 1 2.5423 1.6622 -2.1901 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:23:56 Heat of formation + Delta-G solvation = -45.692059 kcal Electronic energy + Delta-G solvation = -23729.881513 eV Core-core repulsion = 20062.414021 eV Total energy + Delta-G solvation = -3667.467492 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55499 -40.74368 -39.77096 -38.88077 -37.31852 -35.62080 -32.48722 -31.83601 -30.74420 -29.82084 -28.37706 -26.70982 -26.15552 -24.34369 -23.69093 -22.26661 -21.74133 -20.52585 -19.46593 -18.61296 -18.47433 -17.49046 -17.41861 -17.29191 -16.76681 -16.72177 -16.38633 -15.88742 -15.64383 -15.51602 -15.19463 -14.87772 -14.78065 -14.45645 -14.25618 -14.09710 -14.03849 -13.97136 -13.54268 -13.50358 -13.45617 -13.39839 -12.80763 -12.46846 -12.18896 -11.92419 -11.87958 -11.79974 -11.69133 -11.35718 -11.01053 -10.77879 -10.45901 -10.20730 -10.03302 -9.22409 -8.71794 -4.90940 0.27102 0.31515 0.77767 1.32993 1.44552 1.49619 1.62372 1.65075 1.96510 2.59367 2.62445 3.36470 3.43596 3.44781 3.57433 3.66089 3.79350 3.81747 3.84042 3.98281 4.05429 4.10381 4.16287 4.30088 4.30416 4.31309 4.35231 4.41116 4.46068 4.61975 4.69004 4.74850 4.76418 4.83120 4.85817 4.97145 4.97337 5.03993 5.16355 5.25099 5.26900 5.44930 5.51003 5.69076 6.26514 6.47297 6.60839 7.13029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.073 4.073 4 H 0.120 0.880 5 C -0.106 4.106 6 C -0.101 4.101 7 H 0.129 0.871 8 C 0.133 3.867 9 N -0.705 5.705 10 C 0.510 3.490 11 O -0.577 6.577 12 C 0.036 3.964 13 O -0.320 6.320 14 C 0.121 3.879 15 C -0.199 4.199 16 C -0.079 4.079 17 C -0.124 4.124 18 C -0.086 4.086 19 O -0.561 6.561 20 Si 0.770 3.230 21 C -0.062 4.062 22 C -0.167 4.167 23 C -0.118 4.118 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.423 0.577 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.091 0.909 37 H 0.394 0.606 38 H -0.290 1.290 39 H -0.294 1.294 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 7.326 4.461 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.095 6.095 3 C -0.201 4.201 4 H 0.138 0.862 5 C -0.145 4.145 6 C -0.121 4.121 7 H 0.147 0.853 8 C 0.009 3.991 9 N -0.360 5.360 10 C 0.296 3.704 11 O -0.456 6.456 12 C -0.042 4.042 13 O -0.233 6.233 14 C 0.076 3.924 15 C -0.217 4.217 16 C -0.096 4.096 17 C -0.124 4.124 18 C -0.194 4.194 19 O -0.371 6.371 20 Si 0.675 3.325 21 C -0.080 4.080 22 C -0.185 4.185 23 C -0.158 4.158 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.261 0.739 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.109 0.891 37 H 0.244 0.756 38 H -0.218 1.218 39 H -0.221 1.221 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.111 0.889 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.664 5.529 4.448 9.079 hybrid contribution -0.765 0.645 -1.274 1.620 sum -6.430 6.174 3.174 9.462 Atomic orbital electron populations 1.23363 0.91616 1.06992 1.05775 1.87270 1.10555 1.13899 1.97789 1.24804 1.01200 0.91953 1.02180 0.86153 1.22797 0.93091 0.97955 1.00678 1.22675 0.94262 0.99711 0.95448 0.85319 1.21332 0.98754 0.87715 0.91333 1.45634 1.27558 1.30392 1.32409 1.20585 0.82543 0.85988 0.81255 1.90772 1.31093 1.52541 1.71146 1.22764 0.91869 0.98315 0.91202 1.86129 1.47895 1.45966 1.43328 1.19197 0.95383 0.87611 0.90254 1.21482 0.99806 0.96530 1.03923 1.21054 0.97354 0.97236 0.93987 1.19441 0.96691 0.98402 0.97904 1.25044 1.11079 0.99756 0.83559 1.86556 1.95566 1.38406 1.16565 0.94169 0.74301 0.75147 0.88878 1.20935 0.97946 0.92417 0.96663 1.20626 1.00153 1.00965 0.96786 1.23404 0.98882 0.98898 0.94628 0.88059 0.89544 0.89552 0.90249 0.88990 0.91969 0.92705 0.73926 0.85805 0.85133 0.81553 0.83305 0.89069 0.75621 1.21753 1.22112 0.84692 0.85380 0.88934 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.69 22.18 -56.49 -1.25 -1.94 16 3 C -0.07 0.31 4.29 31.21 0.13 0.45 16 4 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 5 C -0.11 0.49 7.22 31.12 0.22 0.72 16 6 C -0.10 0.83 3.76 -10.27 -0.04 0.80 16 7 H 0.13 -1.66 8.14 -2.39 -0.02 -1.68 16 8 C 0.13 -0.38 5.51 86.37 0.48 0.10 16 9 N -0.71 3.79 5.56 -463.06 -2.57 1.22 16 10 C 0.51 1.31 7.91 87.66 0.69 2.01 16 11 O -0.58 -8.75 16.50 16.00 0.26 -8.48 16 12 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 13 O -0.32 -2.08 9.67 -73.43 -0.71 -2.79 16 14 C 0.12 0.54 6.69 22.51 0.15 0.69 16 15 C -0.20 0.26 9.04 22.37 0.20 0.46 16 16 C -0.08 0.04 8.66 22.25 0.19 0.23 16 17 C -0.12 -0.31 5.39 -19.85 -0.11 -0.42 16 18 C -0.09 0.05 2.79 71.24 0.20 0.25 16 19 O -0.56 -1.53 12.81 -148.98 -1.91 -3.43 16 20 Si 0.77 -2.48 29.85 68.60 2.05 -0.43 16 21 C -0.06 -0.27 9.68 22.25 0.22 -0.06 16 22 C -0.17 -1.03 9.99 22.36 0.22 -0.80 16 23 C -0.12 0.80 7.23 31.21 0.23 1.02 16 24 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.08 -0.08 8.06 -2.39 -0.02 -0.10 16 28 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.05 0.09 7.84 -2.39 -0.02 0.07 16 31 H 0.42 -5.78 8.47 -92.71 -0.79 -6.57 16 32 H 0.12 -1.18 7.65 -2.39 -0.02 -1.20 16 33 H 0.13 -1.39 7.67 -2.38 -0.02 -1.41 16 34 H 0.17 -1.54 6.30 -2.91 -0.02 -1.56 16 35 H 0.15 -0.77 4.86 -2.91 -0.01 -0.78 16 36 H 0.09 -0.38 7.96 -2.39 -0.02 -0.39 16 37 H 0.39 -2.10 8.74 -74.06 -0.65 -2.75 16 38 H -0.29 -0.41 7.11 99.48 0.71 0.30 16 39 H -0.29 -0.90 7.05 99.48 0.70 -0.20 16 40 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.09 -0.93 8.14 -2.38 -0.02 -0.95 16 43 H 0.08 -0.22 7.86 -2.39 -0.02 -0.24 16 Total: 0.00 -27.54 371.51 -0.12 -27.67 By element: Atomic # 1 Polarization: -18.69 SS G_CDS: -0.37 Total: -19.07 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.38 Total: 7.26 kcal Atomic # 7 Polarization: 3.79 SS G_CDS: -2.57 Total: 1.22 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -2.35 Total: -14.71 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.05 Total: -0.43 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -1.25 Total: -1.94 kcal Total: -27.54 -0.12 -27.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.026 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds