Wall clock time and date at job start Sun Mar 7 2021 14:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99416 * 2 1 4 4 H 1.08995 * 112.85678 * 316.19436 * 3 2 1 5 5 C 1.53957 * 113.74400 * 87.40398 * 3 2 1 6 6 C 1.53777 * 87.02072 * 139.93987 * 5 3 2 7 7 H 1.08994 * 113.61542 * 89.23419 * 6 5 3 8 8 C 1.53002 * 113.61630 * 220.04956 * 6 5 3 9 9 N 1.46505 * 109.46958 * 274.13902 * 8 6 5 10 10 C 1.34777 * 120.00115 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99593 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00369 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47291 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46886 * 179.97438 * 13 12 10 15 15 O 1.42903 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.35904 * 116.99628 * 180.02562 * 15 14 13 17 17 C 1.38709 * 120.05185 * 180.02562 * 16 15 14 18 18 C 1.38173 * 119.94156 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.97170 * 180.02562 * 18 17 16 20 20 O 1.42891 * 109.47329 * 64.99493 * 19 18 17 21 21 Si 1.86295 * 109.47053 * 184.99878 * 19 18 17 22 22 C 1.38245 * 120.05607 * 359.97438 * 18 17 16 23 23 C 1.38284 * 120.11162 * 0.02881 * 22 18 17 24 24 C 1.38121 * 120.05670 * 359.67148 * 23 22 18 25 25 C 1.53775 * 87.17329 * 334.63702 * 6 5 3 26 26 H 1.09003 * 109.47725 * 60.00145 * 1 2 3 27 27 H 1.09007 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47559 * 299.99804 * 1 2 3 29 29 H 1.09003 * 113.60991 * 25.42171 * 5 3 2 30 30 H 1.09001 * 113.66790 * 254.46957 * 5 3 2 31 31 H 1.08998 * 109.47844 * 154.13505 * 8 6 5 32 32 H 1.09002 * 109.46838 * 34.13234 * 8 6 5 33 33 H 0.97003 * 120.00244 * 359.97438 * 9 8 6 34 34 H 1.09001 * 109.46613 * 59.99889 * 12 10 9 35 35 H 1.09002 * 109.47120 * 300.00240 * 12 10 9 36 36 H 1.09001 * 109.46652 * 60.00253 * 13 12 10 37 37 H 1.08992 * 109.47514 * 300.00342 * 13 12 10 38 38 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 39 39 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 40 40 H 1.07998 * 120.03116 * 359.97438 * 17 16 15 41 41 H 1.09000 * 109.46586 * 304.99505 * 19 18 17 42 42 H 0.96699 * 114.00072 * 180.02562 * 20 19 18 43 43 H 1.48504 * 110.00112 * 299.99691 * 21 19 18 44 44 H 1.48503 * 110.00467 * 61.31383 * 21 19 18 45 45 H 1.08003 * 119.94344 * 180.02562 * 22 18 17 46 46 H 1.07998 * 119.97585 * 179.97438 * 23 22 18 47 47 H 1.08003 * 120.03435 * 180.31896 * 24 23 22 48 48 H 1.09006 * 113.61195 * 139.93878 * 25 6 5 49 49 H 1.08996 * 113.61811 * 270.83929 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.6108 2.3431 -0.6952 5 6 2.2991 2.3860 1.4078 6 6 3.5199 3.1754 0.9067 7 1 3.2651 4.1360 0.4593 8 6 4.6470 3.2798 1.9362 9 7 4.3996 4.4244 2.8166 10 6 5.2672 4.7127 3.8069 11 8 6.2524 4.0243 3.9694 12 6 5.0131 5.8903 4.7122 13 6 6.1394 5.9940 5.7425 14 6 5.8817 7.1900 6.6612 15 8 6.9340 7.2871 7.6232 16 6 6.8564 8.3037 8.5218 17 6 7.8442 8.4576 9.4834 18 6 7.7628 9.4916 10.3963 19 6 8.8359 9.6599 11.4409 20 8 10.0748 9.9784 10.8042 21 14 8.3620 11.0378 12.6017 22 6 6.6984 10.3726 10.3515 23 6 5.7123 10.2212 9.3939 24 6 5.7923 9.1929 8.4752 25 6 3.7281 2.0522 -0.1227 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.5366 1.6641 2.1893 30 1 1.4445 3.0151 1.6568 31 1 5.5980 3.4163 1.4213 32 1 4.6828 2.3662 2.5295 33 1 3.6114 4.9747 2.6868 34 1 4.0618 5.7544 5.2267 35 1 4.9779 6.8039 4.1187 36 1 7.0908 6.1297 5.2282 37 1 6.1742 5.0804 6.3359 38 1 5.8471 8.1035 6.0675 39 1 4.9302 7.0548 7.1755 40 1 8.6757 7.7694 9.5191 41 1 8.9442 8.7323 12.0031 42 1 10.8123 10.1006 11.4176 43 1 8.2111 12.3081 11.8474 44 1 7.0912 10.7043 13.2940 45 1 6.6368 11.1804 11.0657 46 1 4.8815 10.9105 9.3612 47 1 5.0246 9.0781 7.7242 48 1 4.0256 2.4122 -1.1076 49 1 4.3571 1.2390 0.2395 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:24:05 Heat of formation + Delta-G solvation = -61.714877 kcal Electronic energy + Delta-G solvation = -26856.792935 eV Core-core repulsion = 22877.555404 eV Total energy + Delta-G solvation = -3979.237532 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.154 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.38741 -40.97152 -39.79431 -39.16235 -37.36248 -35.56897 -34.93503 -32.68212 -31.45523 -30.12452 -29.69820 -27.90626 -26.80948 -26.71904 -24.32139 -23.81792 -23.13978 -21.84016 -21.53554 -20.48145 -19.00205 -18.43050 -18.27668 -17.60133 -17.54055 -17.50301 -17.05818 -16.84062 -16.62096 -16.35773 -15.88717 -15.43654 -15.29443 -15.16911 -14.84496 -14.63340 -14.56777 -14.37138 -14.18533 -14.09730 -14.01897 -13.56461 -13.52471 -13.45933 -13.28616 -13.22880 -12.81125 -12.64430 -12.43873 -12.27245 -12.12109 -11.92183 -11.79488 -11.77541 -11.65463 -11.37687 -10.97855 -10.78925 -10.39261 -10.13197 -10.00324 -9.38058 -8.73618 -4.93511 0.08210 0.24586 0.75993 1.27607 1.60458 1.62809 1.65285 1.88963 1.97142 2.34341 2.52073 3.36767 3.39320 3.42482 3.58719 3.64606 3.72735 3.78099 3.81048 3.84261 3.85560 3.98761 4.10179 4.15553 4.16111 4.28930 4.29986 4.30811 4.32294 4.33756 4.39249 4.40822 4.59334 4.59973 4.64061 4.73387 4.73817 4.82073 4.84477 4.85954 4.95379 4.98724 5.02817 5.08335 5.17482 5.21713 5.30484 5.32603 5.47123 5.58782 6.32877 6.52739 6.87948 7.24318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.117 4.117 6 C -0.102 4.102 7 H 0.125 0.875 8 C 0.131 3.869 9 N -0.715 5.715 10 C 0.506 3.494 11 O -0.593 6.593 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.056 3.944 15 O -0.334 6.334 16 C 0.123 3.877 17 C -0.147 4.147 18 C -0.053 4.053 19 C -0.089 4.089 20 O -0.565 6.565 21 Si 0.786 3.214 22 C -0.184 4.184 23 C -0.074 4.074 24 C -0.205 4.205 25 C -0.106 4.106 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.419 0.581 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.404 0.596 43 H -0.293 1.293 44 H -0.286 1.286 45 H 0.121 0.879 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.091 0.909 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 4.924 0.150 8.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.094 6.094 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.157 4.157 6 C -0.122 4.122 7 H 0.143 0.857 8 C 0.007 3.993 9 N -0.368 5.368 10 C 0.294 3.706 11 O -0.473 6.473 12 C -0.166 4.166 13 C -0.140 4.140 14 C -0.018 4.018 15 O -0.248 6.248 16 C 0.077 3.923 17 C -0.166 4.166 18 C -0.053 4.053 19 C -0.197 4.197 20 O -0.375 6.375 21 Si 0.691 3.309 22 C -0.201 4.201 23 C -0.092 4.092 24 C -0.223 4.223 25 C -0.145 4.145 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.257 0.743 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.109 0.891 42 H 0.255 0.745 43 H -0.221 1.221 44 H -0.213 1.213 45 H 0.138 0.862 46 H 0.173 0.827 47 H 0.178 0.822 48 H 0.109 0.891 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.927 3.886 -0.132 7.089 hybrid contribution -1.214 0.377 -0.670 1.437 sum -7.142 4.264 -0.802 8.356 Atomic orbital electron populations 1.23365 0.91573 1.07030 1.05769 1.87260 1.10591 1.13761 1.97789 1.24783 1.01135 0.92034 1.02143 0.86265 1.23370 0.98805 0.98860 0.94660 1.22667 0.94470 0.99522 0.95572 0.85732 1.21267 0.98300 0.88677 0.91090 1.45875 1.27216 1.31728 1.31979 1.21208 0.82027 0.86201 0.81205 1.90745 1.30662 1.53418 1.72520 1.21528 1.01016 0.97385 0.96663 1.21156 0.99379 0.97247 0.96233 1.23046 0.89595 0.99800 0.89409 1.86065 1.49302 1.46969 1.42459 1.19187 0.94826 0.88248 0.89999 1.20386 0.99408 1.00762 0.96040 1.19499 0.95256 0.94325 0.96199 1.25011 0.86187 1.09928 0.98612 1.86449 1.18902 1.93393 1.38765 0.94296 0.82902 0.74125 0.79528 1.21023 0.97019 1.00295 1.01796 1.21225 0.98203 0.97043 0.92702 1.21593 0.99866 0.97362 1.03470 1.22792 0.93139 0.97966 1.00641 0.89573 0.87982 0.89542 0.90034 0.88994 0.92426 0.92956 0.74318 0.85355 0.85333 0.92173 0.92099 0.89820 0.89645 0.85436 0.89122 0.74497 1.22094 1.21336 0.86156 0.82681 0.82208 0.89090 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.32 -0.81 22.19 -56.49 -1.25 -2.06 16 3 C -0.07 0.26 4.27 31.18 0.13 0.39 16 4 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 5 C -0.12 0.69 7.24 31.18 0.23 0.92 16 6 C -0.10 0.72 3.75 -10.27 -0.04 0.68 16 7 H 0.12 -1.39 8.14 -2.39 -0.02 -1.41 16 8 C 0.13 -0.23 5.50 86.38 0.47 0.24 16 9 N -0.72 3.23 5.56 -463.04 -2.57 0.66 16 10 C 0.51 0.76 7.83 87.66 0.69 1.45 16 11 O -0.59 -7.81 15.98 -3.05 -0.05 -7.85 16 12 C -0.13 0.81 5.70 29.85 0.17 0.98 16 13 C -0.10 -0.06 4.87 30.59 0.15 0.09 16 14 C 0.06 -0.08 4.74 71.98 0.34 0.26 16 15 O -0.33 -2.45 10.14 -92.47 -0.94 -3.39 16 16 C 0.12 0.92 6.69 22.51 0.15 1.07 16 17 C -0.15 -1.39 9.62 22.37 0.22 -1.17 16 18 C -0.05 -0.41 5.38 -19.88 -0.11 -0.52 16 19 C -0.09 -0.19 2.79 71.24 0.20 0.01 16 20 O -0.57 -1.51 12.81 -148.98 -1.91 -3.42 16 21 Si 0.79 -0.79 29.85 68.60 2.05 1.25 16 22 C -0.18 -1.20 8.67 22.28 0.19 -1.01 16 23 C -0.07 -0.23 10.04 22.25 0.22 0.00 16 24 C -0.20 -0.55 9.04 22.37 0.20 -0.35 16 25 C -0.11 0.39 7.23 31.12 0.23 0.62 16 26 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.08 -0.17 7.88 -2.39 -0.02 -0.19 16 30 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.05 0.14 7.87 -2.39 -0.02 0.12 16 33 H 0.42 -5.02 8.47 -92.71 -0.79 -5.81 16 34 H 0.13 -1.55 8.14 -2.39 -0.02 -1.57 16 35 H 0.13 -1.55 8.14 -2.39 -0.02 -1.57 16 36 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 37 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 38 H 0.08 -0.44 7.65 -2.39 -0.02 -0.46 16 39 H 0.09 -0.48 7.67 -2.39 -0.02 -0.50 16 40 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 42 H 0.40 -3.41 8.74 -74.06 -0.65 -4.05 16 43 H -0.29 -1.73 7.05 99.48 0.70 -1.03 16 44 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 45 H 0.12 0.64 4.86 -2.91 -0.01 0.62 16 46 H 0.16 -0.45 8.06 -2.91 -0.02 -0.47 16 47 H 0.16 -0.64 6.30 -2.91 -0.02 -0.66 16 48 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 49 H 0.08 -0.01 8.06 -2.39 -0.02 -0.03 16 Total: 0.00 -28.18 414.00 -0.46 -28.64 By element: Atomic # 1 Polarization: -18.57 SS G_CDS: -0.45 Total: -19.02 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.66 Total: 5.19 kcal Atomic # 7 Polarization: 3.23 SS G_CDS: -2.57 Total: 0.66 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -2.89 Total: -14.67 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.05 Total: 1.25 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.25 Total: -2.06 kcal Total: -28.18 -0.46 -28.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.073 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds