Wall clock time and date at job start Sun Mar 7 2021 10:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35538 * 125.67371 * 2 1 4 4 C 1.35457 * 108.86886 * 179.97438 * 3 2 1 5 5 C 1.50692 * 126.06862 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.47509 * 119.96876 * 5 4 3 7 7 Si 1.86301 * 109.47192 * 359.97284 * 5 4 3 8 8 H 1.48500 * 109.47360 * 59.99852 * 7 5 4 9 9 H 1.48499 * 109.47311 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46969 * 299.99993 * 7 5 4 11 11 C 1.39840 * 107.86231 * 359.73656 * 4 3 2 12 12 C 1.37648 * 125.67868 * 179.97438 * 2 1 3 13 13 C 1.46672 * 126.23186 * 0.02562 * 12 2 1 14 14 O 1.21687 * 120.00679 * 6.00978 * 13 12 2 15 15 N 1.34781 * 119.99671 * 186.00830 * 13 12 2 16 16 C 1.47583 * 134.48923 * 175.71410 * 15 13 12 17 17 C 1.53950 * 86.11554 * 204.63449 * 16 15 13 18 18 O 1.42897 * 113.74262 * 222.04675 * 17 16 15 19 19 Si 1.63100 * 113.99966 * 209.99918 * 18 17 16 20 20 C 1.86305 * 109.46960 * 299.99772 * 19 18 17 21 21 C 1.86299 * 109.47408 * 59.99593 * 19 18 17 22 22 C 1.86302 * 109.47170 * 179.97438 * 19 18 17 23 23 C 1.53005 * 109.47057 * 59.99955 * 22 19 18 24 24 C 1.53001 * 109.46987 * 179.97438 * 22 19 18 25 25 C 1.53001 * 109.46784 * 299.99769 * 22 19 18 26 26 C 1.47579 * 134.49681 * 355.70046 * 15 13 12 27 27 H 1.09006 * 109.47163 * 274.79647 * 1 2 3 28 28 H 1.09001 * 109.46928 * 34.79309 * 1 2 3 29 29 H 1.09001 * 109.47315 * 154.79967 * 1 2 3 30 30 H 1.07994 * 125.56697 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47645 * 239.97332 * 5 4 3 32 32 H 0.96700 * 113.99803 * 300.00418 * 6 5 4 33 33 H 1.07995 * 126.45484 * 180.27103 * 11 4 3 34 34 H 1.08998 * 113.77729 * 90.33327 * 16 15 13 35 35 H 1.09002 * 113.76876 * 318.93037 * 16 15 13 36 36 H 1.09002 * 113.74463 * 90.73108 * 17 16 15 37 37 H 1.08997 * 109.47033 * 60.00370 * 20 19 18 38 38 H 1.08997 * 109.46830 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47212 * 299.99890 * 20 19 18 40 40 H 1.09000 * 109.46745 * 60.00090 * 21 19 18 41 41 H 1.08997 * 109.47420 * 179.97438 * 21 19 18 42 42 H 1.09000 * 109.47466 * 300.00695 * 21 19 18 43 43 H 1.09000 * 109.47146 * 60.00055 * 23 22 19 44 44 H 1.08997 * 109.46568 * 180.02562 * 23 22 19 45 45 H 1.09003 * 109.46780 * 299.99611 * 23 22 19 46 46 H 1.08999 * 109.46984 * 59.99999 * 24 22 19 47 47 H 1.09004 * 109.46823 * 179.97438 * 24 22 19 48 48 H 1.09000 * 109.47361 * 300.00033 * 24 22 19 49 49 H 1.08997 * 109.46948 * 60.00111 * 25 22 19 50 50 H 1.09007 * 109.46635 * 180.02562 * 25 22 19 51 51 H 1.08998 * 109.47037 * 299.99690 * 25 22 19 52 52 H 1.09000 * 113.76370 * 41.06636 * 26 15 13 53 53 H 1.09003 * 113.77357 * 269.66991 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5522 0.7094 0.0006 5 6 4.7536 1.6190 0.0002 6 8 5.5395 1.3707 1.1677 7 14 4.1886 3.3942 -0.0020 8 1 3.3708 3.6550 1.2098 9 1 5.3726 4.2906 -0.0029 10 1 3.3720 3.6523 -1.2152 11 6 3.5780 -0.6887 0.0071 12 6 2.2678 -1.1181 0.0005 13 6 1.8124 -2.5123 0.0006 14 8 0.6273 -2.7654 -0.1101 15 7 2.7066 -3.5133 0.1233 16 6 2.6064 -4.9810 0.2406 17 6 3.9768 -4.9139 0.9389 18 8 4.8807 -5.9434 0.5324 19 14 5.9403 -6.3905 1.6889 20 6 6.9701 -4.9208 2.1893 21 6 5.0093 -7.0298 3.1706 22 6 7.0513 -7.7320 1.0281 23 6 7.8160 -7.2075 -0.1889 24 6 8.0457 -8.1510 2.1128 25 6 6.2051 -8.9388 0.6176 26 6 4.1791 -3.5819 0.1940 27 1 -0.3634 0.0859 1.0241 28 1 -0.3633 0.8440 -0.5864 29 1 -0.3634 -0.9298 -0.4376 30 1 1.9081 2.1236 -0.0004 31 1 5.3540 1.4277 -0.8892 32 1 5.0679 1.5211 1.9985 33 1 4.4583 -1.3143 0.0132 34 1 2.6264 -5.5008 -0.7173 35 1 1.7980 -5.3156 0.8908 36 1 3.9129 -4.8059 2.0216 37 1 6.3198 -4.1363 2.5761 38 1 7.6785 -5.2197 2.9619 39 1 7.5148 -4.5468 1.3225 40 1 4.4068 -7.8896 2.8778 41 1 5.7174 -7.3290 3.9433 42 1 4.3589 -6.2452 3.5574 43 1 8.4188 -6.3478 0.1035 44 1 8.4657 -7.9926 -0.5757 45 1 7.1078 -6.9088 -0.9618 46 1 7.5013 -8.5245 2.9801 47 1 8.6955 -8.9362 1.7263 48 1 8.6485 -7.2911 2.4049 49 1 5.4970 -8.6400 -0.1552 50 1 6.8553 -9.7239 0.2314 51 1 5.6605 -9.3124 1.4847 52 1 4.6264 -2.7994 0.8070 53 1 4.6611 -3.6906 -0.7775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_10803934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:18:55 Heat of formation + Delta-G solvation = -67.312301 kcal Electronic energy + Delta-G solvation = -30550.477123 eV Core-core repulsion = 26548.201890 eV Total energy + Delta-G solvation = -4002.275233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63094 -41.15082 -39.11416 -37.63237 -36.78057 -36.47148 -33.97617 -31.72228 -29.56710 -29.16957 -29.00597 -28.37161 -27.79286 -27.37649 -27.10228 -25.67707 -23.94991 -21.94985 -21.09056 -20.33670 -19.92271 -18.67657 -18.32842 -17.95683 -17.17717 -16.84293 -16.57046 -16.04776 -15.95475 -15.67154 -15.59226 -15.27571 -15.09096 -14.80048 -14.70626 -14.61592 -14.49040 -14.10648 -13.98929 -13.80281 -13.58899 -13.46380 -13.31953 -13.26127 -13.21077 -13.13014 -13.06852 -12.89488 -12.86960 -12.74116 -12.33641 -12.31632 -12.08595 -11.74895 -11.69377 -11.64968 -11.49140 -11.30366 -11.12709 -10.30758 -10.27497 -10.02022 -9.94345 -9.70531 -9.28490 0.33816 1.18222 1.28508 1.48478 1.56025 1.59064 1.66084 1.81734 2.01579 2.06012 2.15232 2.24252 2.51217 3.23839 3.35913 3.70392 3.80104 3.82893 3.93987 4.01683 4.17564 4.18155 4.19324 4.28010 4.31441 4.44426 4.48478 4.52334 4.58907 4.62310 4.65675 4.69562 4.79047 4.79606 4.83285 4.85442 4.86853 4.88200 4.89376 4.91064 5.06330 5.14984 5.15714 5.17088 5.26744 5.40161 5.47546 5.49228 5.54882 5.65416 5.67212 5.73764 5.85449 6.11363 6.45582 6.85881 6.92980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.414 5.414 3 C 0.023 3.977 4 C -0.216 4.216 5 C -0.041 4.041 6 O -0.554 6.554 7 Si 0.979 3.021 8 H -0.251 1.251 9 H -0.276 1.276 10 H -0.258 1.258 11 C -0.111 4.111 12 C -0.075 4.075 13 C 0.609 3.391 14 O -0.586 6.586 15 N -0.635 5.635 16 C 0.102 3.898 17 C 0.086 3.914 18 O -0.614 6.614 19 Si 1.320 2.680 20 C -0.516 4.516 21 C -0.522 4.522 22 C -0.384 4.384 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.138 4.138 26 C 0.077 3.923 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.190 0.810 31 H 0.119 0.881 32 H 0.387 0.613 33 H 0.165 0.835 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.045 0.955 51 H 0.059 0.941 52 H 0.112 0.888 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 1.664 2.060 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.086 5.086 3 C -0.114 4.114 4 C -0.223 4.223 5 C -0.152 4.152 6 O -0.361 6.361 7 Si 0.803 3.197 8 H -0.175 1.175 9 H -0.202 1.202 10 H -0.182 1.182 11 C -0.137 4.137 12 C -0.188 4.188 13 C 0.402 3.598 14 O -0.469 6.469 15 N -0.371 5.371 16 C -0.020 4.020 17 C 0.028 3.972 18 O -0.571 6.571 19 Si 1.450 2.550 20 C -0.619 4.619 21 C -0.624 4.624 22 C -0.426 4.426 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.196 4.196 26 C -0.045 4.045 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.206 0.794 31 H 0.137 0.863 32 H 0.235 0.765 33 H 0.182 0.818 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.078 0.922 52 H 0.130 0.870 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.060 2.274 1.268 2.811 hybrid contribution -0.236 -0.645 0.586 0.903 sum 0.825 1.628 1.854 2.602 Atomic orbital electron populations 1.22484 0.75001 1.06073 1.04789 1.44016 1.07613 1.04768 1.52199 1.22274 0.90282 0.92282 1.06559 1.20009 0.94138 0.94993 1.13114 1.24299 0.92284 1.07062 0.91592 1.86460 1.41279 1.92185 1.16170 0.85315 0.79060 0.74287 0.81005 1.17493 1.20150 1.18191 1.21706 0.94441 0.95071 1.02475 1.19947 0.91181 0.87032 1.20636 1.16721 0.84101 0.83493 0.75514 1.90761 1.17582 1.84988 1.53607 1.49243 1.08757 1.07143 1.71912 1.23654 0.97632 0.78506 1.02184 1.23562 0.88708 0.86173 0.98745 1.85440 1.53983 1.54580 1.63131 0.76171 0.59147 0.63800 0.55842 1.27102 1.11375 1.16787 1.06591 1.27176 1.09739 1.07233 1.18203 1.25962 1.06026 1.09757 1.00845 1.21556 0.99970 1.00867 0.97094 1.21612 0.98750 1.01659 0.97883 1.21559 0.99381 0.97193 1.01424 1.24272 0.79412 0.97654 1.03145 0.89572 0.87259 0.89347 0.79351 0.86320 0.76470 0.81773 0.87944 0.89188 0.86527 0.90694 0.90516 0.90551 0.91180 0.90430 0.91044 0.91810 0.93675 0.92200 0.91966 0.93351 0.91636 0.92264 0.93594 0.92230 0.87019 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 10.78 127.77 1.38 1.41 16 2 N -0.41 -1.53 3.16 -534.30 -1.69 -3.22 16 3 C 0.02 0.00 9.94 83.48 0.83 0.83 16 4 C -0.22 -0.09 5.44 -20.12 -0.11 -0.20 16 5 C -0.04 0.09 3.02 71.23 0.22 0.31 16 6 O -0.55 0.62 12.88 -148.98 -1.92 -1.30 16 7 Si 0.98 -2.89 25.87 68.60 1.77 -1.11 16 8 H -0.25 0.83 7.11 99.48 0.71 1.53 16 9 H -0.28 -0.30 7.11 99.48 0.71 0.41 16 10 H -0.26 0.52 7.11 99.48 0.71 1.23 16 11 C -0.11 -0.22 9.83 22.57 0.22 0.00 16 12 C -0.08 -0.44 6.88 40.35 0.28 -0.16 16 13 C 0.61 5.31 8.01 86.44 0.69 6.00 16 14 O -0.59 -8.91 15.29 -4.31 -0.07 -8.97 16 15 N -0.64 -1.67 3.61 -845.98 -3.05 -4.72 16 16 C 0.10 -0.04 8.67 86.48 0.75 0.71 16 17 C 0.09 -0.38 3.74 31.26 0.12 -0.26 16 18 O -0.61 2.36 8.58 -148.98 -1.28 1.08 16 19 Si 1.32 -7.32 8.25 68.60 0.57 -6.76 16 20 C -0.52 2.85 8.65 113.37 0.98 3.83 16 21 C -0.52 2.14 8.63 113.37 0.98 3.12 16 22 C -0.38 1.02 0.53 -10.79 -0.01 1.01 16 23 C -0.14 0.25 7.85 71.98 0.56 0.82 16 24 C -0.14 0.39 7.85 71.98 0.56 0.96 16 25 C -0.14 0.16 7.85 71.98 0.56 0.73 16 26 C 0.08 -0.31 7.00 86.48 0.61 0.30 16 27 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.09 0.50 5.96 -2.39 -0.01 0.48 16 30 H 0.19 -0.98 6.19 -2.91 -0.02 -1.00 16 31 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.39 -2.74 8.70 -74.06 -0.64 -3.39 16 33 H 0.17 -0.29 5.14 -2.91 -0.01 -0.31 16 34 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.12 -0.91 6.45 -2.39 -0.02 -0.93 16 37 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 38 H 0.08 -0.41 7.79 -2.39 -0.02 -0.43 16 39 H 0.08 -0.41 7.79 -2.39 -0.02 -0.43 16 40 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 41 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 42 H 0.07 -0.35 7.28 -2.39 -0.02 -0.37 16 43 H 0.06 -0.23 7.80 -2.39 -0.02 -0.24 16 44 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 -0.11 7.97 -2.39 -0.02 -0.12 16 46 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 47 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 49 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 50 H 0.04 0.01 8.14 -2.38 -0.02 -0.01 16 51 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 52 H 0.11 -0.78 6.20 -2.39 -0.01 -0.80 16 53 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: 0.00 -17.88 418.84 3.96 -13.92 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: 1.00 Total: -8.32 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 8.62 Total: 19.39 kcal Atomic # 7 Polarization: -3.19 SS G_CDS: -4.74 Total: -7.94 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -3.26 Total: -9.19 kcal Atomic # 14 Polarization: -10.21 SS G_CDS: 2.34 Total: -7.87 kcal Total: -17.88 3.96 -13.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_10803934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.392 kcal (2) G-P(sol) polarization free energy of solvation -17.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds