Wall clock time and date at job start Sun Mar 7 2021 10:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37645 * 125.67951 * 2 1 4 4 C 1.46673 * 126.23310 * 359.97438 * 3 2 1 5 5 O 1.21692 * 120.00474 * 5.98601 * 4 3 2 6 6 N 1.34787 * 120.00107 * 185.98452 * 4 3 2 7 7 C 1.47577 * 134.49244 * 175.68710 * 6 4 3 8 8 C 1.53947 * 86.11622 * 204.64055 * 7 6 4 9 9 O 1.42894 * 113.73990 * 222.04972 * 8 7 6 10 10 Si 1.63106 * 113.99848 * 210.00044 * 9 8 7 11 11 C 1.86301 * 109.47001 * 299.99946 * 10 9 8 12 12 C 1.86299 * 109.47191 * 59.99773 * 10 9 8 13 13 C 1.86297 * 109.47342 * 180.02562 * 10 9 8 14 14 C 1.52993 * 109.47287 * 59.99760 * 13 10 9 15 15 C 1.52997 * 109.47145 * 179.97438 * 13 10 9 16 16 C 1.53005 * 109.46941 * 299.99651 * 13 10 9 17 17 C 1.47574 * 134.48790 * 355.68569 * 6 4 3 18 18 C 1.37871 * 107.53394 * 180.23776 * 3 2 1 19 19 C 1.39842 * 107.08448 * 359.59020 * 18 3 2 20 20 C 1.35451 * 107.86248 * 0.41487 * 19 18 3 21 21 C 1.50704 * 125.56277 * 179.78023 * 20 19 18 22 22 O 1.42898 * 109.46741 * 209.95754 * 21 20 19 23 23 Si 1.86306 * 109.46894 * 329.95732 * 21 20 19 24 24 H 1.48497 * 109.47072 * 60.00036 * 23 21 20 25 25 H 1.48499 * 109.46805 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46854 * 300.00041 * 23 21 20 27 27 H 1.09009 * 109.46854 * 94.88719 * 1 2 3 28 28 H 1.08999 * 109.47285 * 214.88349 * 1 2 3 29 29 H 1.08999 * 109.47052 * 334.89407 * 1 2 3 30 30 H 1.09000 * 113.76905 * 90.34151 * 7 6 4 31 31 H 1.09003 * 113.76768 * 318.94199 * 7 6 4 32 32 H 1.09003 * 113.73846 * 90.73700 * 8 7 6 33 33 H 1.09009 * 109.47382 * 60.00179 * 11 10 9 34 34 H 1.09002 * 109.47033 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47159 * 300.00047 * 11 10 9 36 36 H 1.08997 * 109.47126 * 59.99933 * 12 10 9 37 37 H 1.09002 * 109.47445 * 180.02562 * 12 10 9 38 38 H 1.09005 * 109.47602 * 300.00523 * 12 10 9 39 39 H 1.09005 * 109.47302 * 60.00105 * 14 13 10 40 40 H 1.08995 * 109.47213 * 180.02562 * 14 13 10 41 41 H 1.09002 * 109.47380 * 300.00178 * 14 13 10 42 42 H 1.09006 * 109.47299 * 59.99620 * 15 13 10 43 43 H 1.09002 * 109.47007 * 179.97438 * 15 13 10 44 44 H 1.08998 * 109.47417 * 300.00020 * 15 13 10 45 45 H 1.08999 * 109.46870 * 59.99831 * 16 13 10 46 46 H 1.08995 * 109.47212 * 179.97438 * 16 13 10 47 47 H 1.09006 * 109.47086 * 300.00125 * 16 13 10 48 48 H 1.09001 * 113.77355 * 41.06659 * 17 6 4 49 49 H 1.09002 * 113.77404 * 269.65644 * 17 6 4 50 50 H 1.08001 * 126.45859 * 179.70334 * 18 3 2 51 51 H 1.07998 * 126.06530 * 180.13422 * 19 18 3 52 52 H 1.09003 * 109.47092 * 89.95474 * 21 20 19 53 53 H 0.96697 * 114.00235 * 60.00255 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8125 2.5123 -0.0005 5 8 0.6272 2.7654 0.1089 6 7 2.7068 3.5134 -0.1222 7 6 2.6068 4.9810 -0.2400 8 6 3.9781 4.9138 -0.9364 9 8 4.8813 5.9433 -0.5288 10 14 5.9425 6.3903 -1.6840 11 6 6.9730 4.9206 -2.1828 12 6 5.0135 7.0293 -3.1670 13 6 7.0536 7.7309 -1.0215 14 6 7.8165 7.2055 0.1961 15 6 8.0494 8.1496 -2.1050 16 6 6.2077 8.9381 -0.6115 17 6 4.1794 3.5819 -0.1910 18 6 3.5780 0.6887 -0.0055 19 6 3.5521 -0.7095 0.0008 20 6 2.2554 -1.1010 0.0004 21 6 1.7708 -2.5280 0.0014 22 8 0.5127 -2.6041 -0.6720 23 14 3.0113 -3.6057 -0.8765 24 1 4.3187 -3.5265 -0.1767 25 1 2.5334 -5.0117 -0.8761 26 1 3.1702 -3.1378 -2.2768 27 1 -0.3633 -0.0876 -1.0240 28 1 -0.3634 -0.8430 0.5877 29 1 -0.3633 0.9306 0.4360 30 1 2.6255 5.5009 0.7178 31 1 1.7992 5.3154 -0.8913 32 1 3.9155 4.8056 -2.0192 33 1 6.3232 4.1358 -2.5703 34 1 7.6819 5.2191 -2.9551 35 1 7.5166 4.5467 -1.3151 36 1 4.4105 7.8891 -2.8753 37 1 5.7226 7.3276 -3.9393 38 1 4.3636 6.2446 -3.5546 39 1 8.4192 6.3455 -0.0960 40 1 8.4663 7.9900 0.5840 41 1 7.1074 6.9069 0.9682 42 1 7.5062 8.5238 -2.9728 43 1 8.6992 8.9343 -1.7175 44 1 8.6520 7.2895 -2.3967 45 1 5.4985 8.6394 0.1604 46 1 6.8577 9.7223 -0.2235 47 1 5.6641 9.3124 -1.4791 48 1 4.6275 2.7993 -0.8032 49 1 4.6601 3.6908 0.7812 50 1 4.4583 1.3143 -0.0114 51 1 4.4132 -1.3613 0.0009 52 1 1.6542 -2.8714 1.0293 53 1 0.5417 -2.3132 -1.5937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_10803936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:41 Heat of formation + Delta-G solvation = -68.041346 kcal Electronic energy + Delta-G solvation = -30442.855232 eV Core-core repulsion = 26440.548384 eV Total energy + Delta-G solvation = -4002.306847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.66474 -41.17885 -39.11881 -37.72421 -36.78548 -36.47651 -33.91123 -31.91136 -29.87800 -29.25454 -29.01428 -27.80569 -27.68537 -27.38486 -27.23306 -26.23357 -23.50967 -22.05213 -21.00540 -20.33802 -20.09941 -18.71757 -18.39883 -18.09122 -17.43810 -16.96760 -16.24617 -16.16352 -15.95463 -15.53585 -15.46933 -15.10210 -14.99110 -14.80713 -14.78476 -14.69205 -14.55093 -14.09813 -14.00527 -13.84788 -13.77530 -13.52935 -13.32745 -13.28077 -13.13124 -13.12445 -13.02443 -12.90142 -12.87444 -12.74333 -12.35690 -12.32682 -11.98833 -11.90086 -11.72211 -11.65398 -11.49132 -11.30269 -11.12617 -10.68845 -10.28522 -10.02307 -9.92882 -9.78810 -9.12701 0.30857 1.03459 1.23679 1.51114 1.58097 1.65473 1.71319 1.81315 1.98545 2.13379 2.15155 2.27613 2.50966 3.24366 3.32751 3.38880 3.58639 3.82894 3.94041 4.02009 4.17160 4.17684 4.25925 4.32662 4.35889 4.48318 4.49430 4.52580 4.54274 4.62491 4.63015 4.68253 4.75147 4.78518 4.82752 4.86294 4.87791 4.89094 4.91189 5.03141 5.05797 5.11369 5.14548 5.15295 5.26378 5.39882 5.46972 5.49025 5.54765 5.64856 5.71949 5.73343 5.93510 6.11332 6.46141 6.53310 6.94066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.403 5.403 3 C -0.078 4.078 4 C 0.608 3.392 5 O -0.588 6.588 6 N -0.636 5.636 7 C 0.101 3.899 8 C 0.086 3.914 9 O -0.614 6.614 10 Si 1.320 2.680 11 C -0.515 4.515 12 C -0.523 4.523 13 C -0.384 4.384 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.139 4.139 17 C 0.077 3.923 18 C -0.130 4.130 19 C -0.219 4.219 20 C 0.015 3.985 21 C -0.066 4.066 22 O -0.552 6.552 23 Si 1.021 2.979 24 H -0.244 1.244 25 H -0.271 1.271 26 H -0.261 1.261 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.058 0.942 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.174 0.826 51 H 0.168 0.832 52 H 0.131 0.869 53 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -1.453 -2.594 6.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.076 5.076 3 C -0.191 4.191 4 C 0.401 3.599 5 O -0.471 6.471 6 N -0.371 5.371 7 C -0.021 4.021 8 C 0.028 3.972 9 O -0.572 6.572 10 Si 1.450 2.550 11 C -0.618 4.618 12 C -0.625 4.625 13 C -0.426 4.426 14 C -0.195 4.195 15 C -0.199 4.199 16 C -0.196 4.196 17 C -0.045 4.045 18 C -0.156 4.156 19 C -0.242 4.242 20 C -0.104 4.104 21 C -0.175 4.175 22 O -0.359 6.359 23 Si 0.842 3.158 24 H -0.167 1.167 25 H -0.195 1.195 26 H -0.185 1.185 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.191 0.809 51 H 0.185 0.815 52 H 0.149 0.851 53 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.489 -2.079 -2.088 5.369 hybrid contribution -0.236 1.013 -0.421 1.122 sum 4.253 -1.066 -2.508 5.051 Atomic orbital electron populations 1.22336 0.75445 1.04924 1.04514 1.43919 1.07310 1.04325 1.52085 1.19994 0.91490 0.86836 1.20740 1.16748 0.84094 0.83539 0.75508 1.90766 1.17746 1.85014 1.53607 1.49238 1.08835 1.07046 1.71978 1.23654 0.97717 0.78584 1.02148 1.23563 0.88614 0.86267 0.98751 1.85442 1.53970 1.54618 1.63129 0.76178 0.59147 0.63905 0.55780 1.27078 1.11360 1.16693 1.06640 1.27196 1.09727 1.07216 1.18313 1.25971 1.06038 1.09741 1.00891 1.21552 0.99967 1.00884 0.97055 1.21611 0.98734 1.01678 0.97873 1.21561 0.99390 0.97245 1.01390 1.24297 0.79317 0.97619 1.03242 1.21919 0.94634 0.95654 1.03400 1.21016 0.95611 0.95728 1.11883 1.21572 0.91170 0.89753 1.07884 1.25121 0.94518 0.93278 1.04591 1.86481 1.30253 1.89071 1.30069 0.84688 0.76144 0.76277 0.78718 1.16712 1.19544 1.18488 0.89721 0.88187 0.90042 0.88044 0.89365 0.86492 0.90543 0.90511 0.90345 0.91291 0.90458 0.91056 0.91693 0.93738 0.92199 0.92032 0.93395 0.91552 0.92296 0.93622 0.92289 0.86620 0.86723 0.80927 0.81487 0.85122 0.76287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 9.39 127.77 1.20 1.49 16 2 N -0.40 -2.22 3.16 -519.70 -1.64 -3.86 16 3 C -0.08 -0.50 6.88 40.35 0.28 -0.23 16 4 C 0.61 5.64 8.01 86.44 0.69 6.33 16 5 O -0.59 -9.63 15.29 -4.32 -0.07 -9.70 16 6 N -0.64 -1.58 3.61 -846.04 -3.05 -4.63 16 7 C 0.10 -0.04 8.67 86.48 0.75 0.71 16 8 C 0.09 -0.43 3.74 31.26 0.12 -0.32 16 9 O -0.61 2.74 8.58 -148.98 -1.28 1.46 16 10 Si 1.32 -8.23 8.25 68.60 0.57 -7.66 16 11 C -0.52 3.55 8.65 113.37 0.98 4.54 16 12 C -0.52 2.32 8.63 113.37 0.98 3.30 16 13 C -0.38 1.21 0.53 -10.80 -0.01 1.21 16 14 C -0.14 0.34 7.84 71.98 0.56 0.91 16 15 C -0.14 0.47 7.85 71.98 0.56 1.03 16 16 C -0.14 0.19 7.85 71.98 0.56 0.76 16 17 C 0.08 -0.39 7.00 86.48 0.61 0.21 16 18 C -0.13 -0.16 9.89 22.57 0.22 0.07 16 19 C -0.22 -0.07 9.37 22.01 0.21 0.14 16 20 C 0.01 0.02 6.14 41.34 0.25 0.28 16 21 C -0.07 0.16 2.90 71.24 0.21 0.37 16 22 O -0.55 0.91 10.50 -148.98 -1.56 -0.66 16 23 Si 1.02 -4.07 26.55 68.60 1.82 -2.25 16 24 H -0.24 1.10 6.79 99.48 0.68 1.77 16 25 H -0.27 0.24 7.11 99.48 0.71 0.94 16 26 H -0.26 0.61 7.11 99.48 0.71 1.32 16 27 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 28 H 0.10 0.22 7.12 -2.39 -0.02 0.20 16 29 H 0.08 0.73 5.95 -2.39 -0.01 0.72 16 30 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.12 -1.00 6.45 -2.39 -0.02 -1.01 16 33 H 0.08 -0.63 7.96 -2.38 -0.02 -0.65 16 34 H 0.08 -0.51 7.79 -2.39 -0.02 -0.53 16 35 H 0.08 -0.56 7.79 -2.39 -0.02 -0.57 16 36 H 0.07 -0.22 7.79 -2.39 -0.02 -0.23 16 37 H 0.08 -0.36 7.79 -2.39 -0.02 -0.37 16 38 H 0.07 -0.38 7.28 -2.38 -0.02 -0.39 16 39 H 0.06 -0.29 7.79 -2.38 -0.02 -0.31 16 40 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.06 -0.14 7.97 -2.39 -0.02 -0.16 16 42 H 0.06 -0.27 7.80 -2.38 -0.02 -0.29 16 43 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 45 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 46 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.06 -0.14 7.80 -2.38 -0.02 -0.16 16 48 H 0.12 -1.07 6.20 -2.39 -0.01 -1.09 16 49 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 50 H 0.17 -0.84 5.13 -2.91 -0.01 -0.85 16 51 H 0.17 -0.71 6.65 -2.91 -0.02 -0.73 16 52 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 53 H 0.39 -2.64 8.70 -74.06 -0.64 -3.28 16 Total: 0.00 -18.12 414.97 3.94 -14.18 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: 0.97 Total: -7.67 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 8.18 Total: 20.79 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -4.69 Total: -8.49 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -2.91 Total: -8.89 kcal Atomic # 14 Polarization: -12.30 SS G_CDS: 2.39 Total: -9.92 kcal Total: -18.12 3.94 -14.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_10803936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.860 kcal (2) G-P(sol) polarization free energy of solvation -18.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds