Wall clock time and date at job start Sun Mar 7 2021 10:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46830 * 2 1 4 4 C 1.53000 * 109.47139 * 240.00633 * 2 1 3 5 5 Si 1.86297 * 109.47573 * 120.00124 * 2 1 3 6 6 C 1.86302 * 109.47175 * 300.00312 * 5 2 1 7 7 C 1.86299 * 109.47548 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47047 * 59.99977 * 5 2 1 9 9 C 1.42895 * 114.00291 * 180.02562 * 8 5 2 10 10 C 1.53496 * 114.20746 * 149.99888 * 9 8 5 11 11 N 1.47073 * 87.98517 * 139.85651 * 10 9 8 12 12 C 1.34776 * 136.05824 * 152.84742 * 11 10 9 13 13 O 1.21586 * 119.99747 * 354.41224 * 12 11 10 14 14 C 1.47580 * 119.99730 * 174.41267 * 12 11 10 15 15 C 1.40204 * 119.82897 * 172.94692 * 14 12 11 16 16 C 1.36232 * 120.37771 * 179.75500 * 15 14 12 17 17 C 1.39882 * 119.95935 * 0.52110 * 16 15 14 18 18 C 1.46252 * 133.84247 * 179.75897 * 17 16 15 19 19 C 1.50695 * 126.48782 * 359.96168 * 18 17 16 20 20 O 1.42899 * 109.47015 * 285.00006 * 19 18 17 21 21 Si 1.86301 * 109.47669 * 164.99626 * 19 18 17 22 22 H 1.48504 * 109.46856 * 59.99738 * 21 19 18 23 23 H 1.48499 * 109.47462 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46901 * 300.00016 * 21 19 18 25 25 C 1.34459 * 107.03394 * 179.97438 * 18 17 16 26 26 N 1.36558 * 109.98630 * 0.02562 * 25 18 17 27 27 C 1.37832 * 109.85824 * 0.02562 * 26 25 18 28 28 C 1.38645 * 133.37576 * 180.02562 * 27 26 25 29 29 C 1.47066 * 87.88347 * 333.10211 * 11 10 9 30 30 H 1.08997 * 109.46830 * 299.99593 * 1 2 3 31 31 H 1.09001 * 109.47147 * 60.00061 * 1 2 3 32 32 H 1.08998 * 109.46669 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46829 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47707 * 300.00008 * 3 2 1 35 35 H 1.08997 * 109.47082 * 60.00561 * 3 2 1 36 36 H 1.08998 * 109.47094 * 299.99439 * 4 2 1 37 37 H 1.09001 * 109.47667 * 59.99624 * 4 2 1 38 38 H 1.09006 * 109.47063 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.47147 * 180.02562 * 6 5 2 40 40 H 1.09000 * 109.46800 * 299.99607 * 6 5 2 41 41 H 1.08994 * 109.46952 * 59.99797 * 6 5 2 42 42 H 1.09004 * 109.47078 * 300.00281 * 7 5 2 43 43 H 1.09000 * 109.47259 * 59.99883 * 7 5 2 44 44 H 1.08998 * 109.47455 * 180.02562 * 7 5 2 45 45 H 1.09007 * 113.28080 * 16.93622 * 9 8 5 46 46 H 1.08998 * 113.46859 * 25.07715 * 10 9 8 47 47 H 1.08996 * 113.52384 * 254.63999 * 10 9 8 48 48 H 1.07996 * 119.81216 * 0.02562 * 15 14 12 49 49 H 1.07998 * 120.02508 * 180.23303 * 16 15 14 50 50 H 1.09002 * 109.46926 * 44.99844 * 19 18 17 51 51 H 0.96704 * 113.99740 * 299.99573 * 20 19 18 52 52 H 1.07997 * 125.00758 * 180.02562 * 25 18 17 53 53 H 0.97000 * 125.07449 * 179.97438 * 26 25 18 54 54 H 1.08003 * 120.16825 * 359.94782 * 28 27 26 55 55 H 1.08997 * 113.46735 * 141.68027 * 29 11 10 56 56 H 1.09007 * 113.47112 * 272.12087 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5301 -0.0001 3.0423 7 6 4.0141 -0.8775 1.5214 8 8 1.6075 -2.4160 1.5210 9 6 2.0287 -3.1814 2.6518 10 6 1.0411 -4.2786 3.0724 11 7 2.1976 -5.1534 3.3176 12 6 2.4667 -6.2053 4.1160 13 8 1.6504 -6.5664 4.9416 14 6 3.7522 -6.9189 3.9880 15 6 4.0920 -7.9151 4.9142 16 6 5.2735 -8.5843 4.8038 17 6 6.1598 -8.2707 3.7680 18 6 7.4743 -8.7749 3.3720 19 6 8.2615 -9.8611 4.0586 20 8 8.8254 -9.3489 5.2676 21 14 9.6279 -10.4435 2.9340 22 1 10.5273 -9.3051 2.6172 23 1 10.4032 -11.5143 3.6104 24 1 9.0417 -10.9758 1.6776 25 6 7.8477 -8.0859 2.2794 26 7 6.8804 -7.1820 1.9445 27 6 5.8319 -7.2666 2.8352 28 6 4.6253 -6.5938 2.9522 29 6 2.9334 -4.3710 2.3129 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7215 -1.2491 39 1 1.8939 -0.5137 3.9322 40 1 1.8934 1.0276 3.0423 41 1 0.4402 -0.0002 3.0423 42 1 4.3778 -1.3911 0.6314 43 1 4.3771 0.1502 1.5217 44 1 4.3775 -1.3918 2.4111 45 1 2.3927 -2.5679 3.4760 46 1 0.4017 -4.6221 2.2592 47 1 0.4808 -4.0366 3.9755 48 1 3.4114 -8.1564 5.7172 49 1 5.5278 -9.3533 5.5182 50 1 7.6013 -10.6967 4.2910 51 1 9.4249 -8.6016 5.1362 52 1 8.7759 -8.2265 1.7455 53 1 6.9249 -6.5710 1.1924 54 1 4.3627 -5.8229 2.2429 55 1 3.9793 -4.2065 2.5716 56 1 2.8031 -4.7392 1.2952 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12335838.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:32:56 Heat of formation + Delta-G solvation = -52.041127 kcal Electronic energy + Delta-G solvation = -34438.593048 eV Core-core repulsion = 30052.301601 eV Total energy + Delta-G solvation = -4386.291447 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 390.193 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.51550 -41.61916 -39.55051 -37.86962 -37.40365 -36.80270 -36.56140 -33.42785 -31.42562 -30.64491 -29.59904 -29.20961 -29.02625 -27.81326 -27.39752 -27.12571 -26.44033 -24.77209 -23.61332 -22.48403 -20.94532 -20.39022 -20.25433 -19.13235 -18.63403 -18.41976 -17.81039 -17.12327 -16.90658 -16.46061 -16.07676 -16.01565 -15.80339 -15.61662 -15.44820 -15.16812 -14.97781 -14.82383 -14.76468 -14.65289 -14.54103 -14.37939 -14.28363 -13.93553 -13.81313 -13.54322 -13.35461 -13.17291 -13.15232 -13.00501 -12.91640 -12.89030 -12.81033 -12.65778 -12.41430 -12.34970 -12.27390 -12.02387 -11.75299 -11.69184 -11.65867 -11.52128 -11.27999 -11.12252 -10.79155 -10.30138 -10.24294 -10.04434 -9.92987 -9.35433 -8.80103 -0.36768 0.36338 1.23429 1.27423 1.36720 1.52557 1.62008 1.75306 1.79163 1.90757 2.02211 2.08143 2.11546 2.48003 2.83746 3.16784 3.32046 3.59426 3.71609 3.79007 3.84465 3.93131 4.04002 4.12907 4.15537 4.16168 4.26623 4.29705 4.41003 4.47814 4.48563 4.54801 4.55350 4.60565 4.63563 4.64367 4.75962 4.80145 4.83353 4.84947 4.85645 4.86030 4.88450 4.98816 5.04413 5.13196 5.14111 5.22425 5.24675 5.38389 5.43547 5.45372 5.46728 5.48493 5.52494 5.60921 5.62884 5.69720 5.96719 6.49295 6.56939 6.86396 6.94148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.384 4.384 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.322 2.678 6 C -0.526 4.526 7 C -0.514 4.514 8 O -0.610 6.610 9 C 0.084 3.916 10 C 0.091 3.909 11 N -0.644 5.644 12 C 0.591 3.409 13 O -0.580 6.580 14 C -0.132 4.132 15 C -0.103 4.103 16 C -0.084 4.084 17 C -0.080 4.080 18 C -0.230 4.230 19 C -0.053 4.053 20 O -0.560 6.560 21 Si 0.992 3.008 22 H -0.233 1.233 23 H -0.282 1.282 24 H -0.257 1.257 25 C 0.086 3.914 26 N -0.571 5.571 27 C 0.072 3.928 28 C -0.081 4.081 29 C 0.071 3.929 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.123 0.877 49 H 0.133 0.867 50 H 0.106 0.894 51 H 0.387 0.613 52 H 0.206 0.794 53 H 0.438 0.562 54 H 0.163 0.837 55 H 0.111 0.889 56 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 4.494 -7.003 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.426 4.426 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.452 2.548 6 C -0.627 4.627 7 C -0.617 4.617 8 O -0.567 6.567 9 C 0.026 3.974 10 C -0.031 4.031 11 N -0.380 5.380 12 C 0.384 3.616 13 O -0.461 6.461 14 C -0.136 4.136 15 C -0.123 4.123 16 C -0.102 4.102 17 C -0.085 4.085 18 C -0.238 4.238 19 C -0.162 4.162 20 O -0.367 6.367 21 Si 0.814 3.186 22 H -0.156 1.156 23 H -0.207 1.207 24 H -0.181 1.181 25 C -0.044 4.044 26 N -0.175 5.175 27 C -0.035 4.035 28 C -0.102 4.102 29 C -0.051 4.051 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.141 0.859 49 H 0.151 0.849 50 H 0.124 0.876 51 H 0.236 0.764 52 H 0.223 0.777 53 H 0.279 0.721 54 H 0.180 0.820 55 H 0.128 0.872 56 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.402 3.315 -7.015 10.059 hybrid contribution -0.491 1.140 0.143 1.249 sum 5.910 4.455 -6.872 10.100 Atomic orbital electron populations 1.21564 0.94521 1.01905 1.01654 1.25961 1.00205 1.02974 1.13455 1.21615 1.01444 0.94855 1.02023 1.21554 1.01262 1.00131 0.96484 0.76154 0.63085 0.52142 0.63451 1.27233 1.06949 1.10019 1.18483 1.27064 1.24192 1.05273 1.05171 1.85414 1.78435 1.46808 1.46045 1.23212 0.94943 0.91152 0.88068 1.23484 0.91081 0.86724 1.01856 1.49042 1.18781 1.30581 1.39590 1.17878 0.86603 0.77772 0.79337 1.90782 1.50823 1.66939 1.37598 1.19361 0.94401 1.00517 0.99312 1.20694 0.97068 0.95649 0.98926 1.20310 0.92566 0.99868 0.97486 1.19508 0.95411 0.97469 0.96101 1.20879 0.96386 1.05492 1.00997 1.24469 1.02873 0.96405 0.92491 1.86497 1.65581 1.53837 1.30770 0.85159 0.76371 0.80326 0.76744 1.15559 1.20701 1.18136 1.22249 0.94764 0.90737 0.96631 1.41681 1.14448 1.34484 1.26843 1.18117 0.91681 0.99895 0.93773 1.20763 0.90668 1.00123 0.98607 1.23995 0.98899 0.88026 0.94139 0.92390 0.93564 0.92219 0.91513 0.93327 0.92124 0.92077 0.93704 0.91627 0.91229 0.90474 0.91317 0.90142 0.90481 0.90723 0.86502 0.87629 0.90226 0.85942 0.84906 0.87649 0.76429 0.77743 0.72097 0.82036 0.87154 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.27 7.85 71.98 0.56 0.83 16 2 C -0.38 1.50 0.53 -10.79 -0.01 1.49 16 3 C -0.14 0.55 7.85 71.98 0.56 1.12 16 4 C -0.14 0.52 7.85 71.98 0.56 1.08 16 5 Si 1.32 -8.95 8.24 68.60 0.57 -8.38 16 6 C -0.53 2.21 8.64 113.37 0.98 3.19 16 7 C -0.51 4.00 8.65 113.37 0.98 4.98 16 8 O -0.61 3.22 8.62 -148.98 -1.28 1.94 16 9 C 0.08 -0.45 3.89 30.84 0.12 -0.33 16 10 C 0.09 -0.03 8.46 83.18 0.70 0.67 16 11 N -0.64 -1.51 3.67 -863.10 -3.17 -4.68 16 12 C 0.59 5.87 7.99 86.71 0.69 6.57 16 13 O -0.58 -10.89 17.12 -3.99 -0.07 -10.96 16 14 C -0.13 -0.90 5.87 -20.07 -0.12 -1.02 16 15 C -0.10 -0.90 9.51 22.28 0.21 -0.69 16 16 C -0.08 -0.55 10.03 22.20 0.22 -0.32 16 17 C -0.08 -0.32 6.35 -20.14 -0.13 -0.45 16 18 C -0.23 0.13 5.57 -18.65 -0.10 0.03 16 19 C -0.05 0.07 3.06 71.23 0.22 0.29 16 20 O -0.56 -0.48 12.88 -148.98 -1.92 -2.40 16 21 Si 0.99 -4.55 26.08 68.60 1.79 -2.76 16 22 H -0.23 1.85 7.03 99.48 0.70 2.55 16 23 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 24 H -0.26 0.90 7.11 99.48 0.71 1.61 16 25 C 0.09 -0.53 10.43 83.09 0.87 0.34 16 26 N -0.57 3.79 6.07 -187.72 -1.14 2.65 16 27 C 0.07 0.02 7.26 38.95 0.28 0.30 16 28 C -0.08 -0.02 9.15 22.63 0.21 0.18 16 29 C 0.07 -0.45 5.92 83.09 0.49 0.04 16 30 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 -0.11 7.97 -2.39 -0.02 -0.13 16 33 H 0.07 -0.39 7.79 -2.38 -0.02 -0.41 16 34 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 36 H 0.06 -0.24 7.97 -2.39 -0.02 -0.26 16 37 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.06 -0.39 7.79 -2.38 -0.02 -0.41 16 39 H 0.07 -0.32 7.31 -2.39 -0.02 -0.34 16 40 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 41 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 42 H 0.08 -0.70 7.79 -2.38 -0.02 -0.71 16 43 H 0.08 -0.57 7.79 -2.39 -0.02 -0.58 16 44 H 0.07 -0.66 7.96 -2.39 -0.02 -0.67 16 45 H 0.12 -0.95 6.49 -2.38 -0.02 -0.96 16 46 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.12 1.28 7.64 -2.91 -0.02 1.26 16 49 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 50 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 51 H 0.39 -2.51 8.70 -74.05 -0.64 -3.16 16 52 H 0.21 -2.69 6.29 -2.91 -0.02 -2.71 16 53 H 0.44 -6.02 8.96 -92.71 -0.83 -6.85 16 54 H 0.16 -1.02 4.16 -2.91 -0.01 -1.03 16 55 H 0.11 -1.16 6.79 -2.39 -0.02 -1.18 16 56 H 0.12 -1.14 8.12 -2.38 -0.02 -1.16 16 Total: 0.00 -24.02 446.17 2.27 -21.75 By element: Atomic # 1 Polarization: -15.63 SS G_CDS: 0.17 Total: -15.46 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 7.32 Total: 18.29 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -4.30 Total: -2.03 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -3.27 Total: -11.42 kcal Atomic # 14 Polarization: -13.50 SS G_CDS: 2.35 Total: -11.14 kcal Total: -24.02 2.27 -21.75 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12335838.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.289 kcal (2) G-P(sol) polarization free energy of solvation -24.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds