Wall clock time and date at job start Sun Mar 7 2021 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35655 * 116.99734 * 2 1 4 4 C 1.38665 * 120.15525 * 0.25370 * 3 2 1 5 5 C 1.38094 * 120.08514 * 180.27338 * 4 3 2 6 6 C 1.38508 * 120.39183 * 359.72714 * 5 4 3 7 7 C 1.50697 * 119.85316 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46960 * 245.02033 * 7 6 5 9 9 Si 1.86302 * 109.47016 * 5.01566 * 7 6 5 10 10 H 1.48507 * 109.46792 * 60.00561 * 9 7 6 11 11 H 1.48500 * 109.46930 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47224 * 300.00414 * 9 7 6 13 13 C 1.37837 * 120.30002 * 0.02562 * 6 5 4 14 14 C 1.39670 * 119.90331 * 359.97438 * 13 6 5 15 15 C 1.47537 * 120.18977 * 180.02562 * 14 13 6 16 16 O 1.21592 * 120.00065 * 204.38745 * 15 14 13 17 17 N 1.34781 * 119.99942 * 24.65998 * 15 14 13 18 18 C 1.47061 * 136.05444 * 4.78526 * 17 15 14 19 19 C 1.53762 * 87.88821 * 152.96424 * 18 17 15 20 20 O 1.42891 * 114.08882 * 139.77964 * 19 18 17 21 21 Si 1.63099 * 114.00148 * 116.56488 * 20 19 18 22 22 C 1.86298 * 109.46941 * 299.99972 * 21 20 19 23 23 C 1.86302 * 109.47055 * 59.99915 * 21 20 19 24 24 C 1.86302 * 109.47147 * 179.97438 * 21 20 19 25 25 C 1.53003 * 109.47342 * 59.99926 * 24 21 20 26 26 C 1.52999 * 109.46815 * 180.02562 * 24 21 20 27 27 C 1.53004 * 109.47048 * 300.00018 * 24 21 20 28 28 C 1.47067 * 136.05714 * 185.16004 * 17 15 14 29 29 H 1.09001 * 109.46684 * 59.99634 * 1 2 3 30 30 H 1.08995 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47057 * 300.00245 * 1 2 3 32 32 H 1.07993 * 119.95486 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.81061 * 179.70000 * 5 4 3 34 34 H 1.09002 * 109.47115 * 125.02046 * 7 6 5 35 35 H 0.96694 * 114.00010 * 59.99708 * 8 7 6 36 36 H 1.07991 * 120.05127 * 179.97438 * 13 6 5 37 37 H 1.08999 * 113.47164 * 267.69617 * 18 17 15 38 38 H 1.08997 * 113.46854 * 38.13944 * 18 17 15 39 39 H 1.08999 * 114.39286 * 272.68110 * 19 18 17 40 40 H 1.08995 * 109.47503 * 60.00150 * 22 21 20 41 41 H 1.09003 * 109.46881 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.46861 * 299.99515 * 22 21 20 43 43 H 1.08993 * 109.47121 * 60.00237 * 23 21 20 44 44 H 1.09003 * 109.47072 * 179.97438 * 23 21 20 45 45 H 1.08991 * 109.46808 * 300.00067 * 23 21 20 46 46 H 1.09000 * 109.47040 * 59.99397 * 25 24 21 47 47 H 1.08991 * 109.46963 * 179.97438 * 25 24 21 48 48 H 1.09003 * 109.47078 * 300.00191 * 25 24 21 49 49 H 1.08995 * 109.47491 * 60.00272 * 26 24 21 50 50 H 1.09008 * 109.46885 * 179.97438 * 26 24 21 51 51 H 1.09000 * 109.47290 * 299.99577 * 26 24 21 52 52 H 1.08992 * 109.47474 * 59.99716 * 27 24 21 53 53 H 1.08997 * 109.46763 * 180.02562 * 27 24 21 54 54 H 1.09003 * 109.46872 * 299.99606 * 27 24 21 55 55 H 1.09003 * 113.46722 * 321.86429 * 28 17 15 56 56 H 1.08998 * 113.46743 * 92.30503 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3737 0.0053 5 6 1.9211 3.6034 -0.0004 6 6 3.3038 3.6837 -0.0058 7 6 3.9769 5.0320 -0.0125 8 8 4.6942 5.2001 -1.2370 9 14 2.6893 6.3696 0.1415 10 1 1.9439 6.1949 1.4140 11 1 3.3526 7.6982 0.1354 12 1 1.7451 6.2818 -1.0013 13 6 4.0671 2.5360 -0.0060 14 6 3.4446 1.2857 -0.0002 15 6 4.2554 0.0531 0.0001 16 8 3.7867 -0.9831 -0.4301 17 7 5.5138 0.0745 0.4824 18 6 6.3758 1.0623 1.1487 19 6 7.1169 -0.1130 1.8073 20 8 8.5344 0.0552 1.8738 21 14 9.1232 0.1277 3.3930 22 6 8.3560 1.5703 4.2881 23 6 8.7140 -1.4509 4.2938 24 6 10.9724 0.3460 3.3326 25 6 11.3091 1.6422 2.5926 26 6 11.5248 0.4134 4.7577 27 6 11.6021 -0.8391 2.5976 28 6 6.6313 -0.8777 0.5681 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2142 2.3192 0.0099 33 1 1.3310 4.5078 -0.0011 34 1 4.6699 5.0964 0.8263 35 1 4.1391 5.1543 -2.0275 36 1 5.1449 2.6033 -0.0106 37 1 6.9956 1.6338 0.4577 38 1 5.8430 1.6942 1.8592 39 1 6.6768 -0.4545 2.7441 40 1 7.2741 1.4422 4.3236 41 1 8.7499 1.6190 5.3033 42 1 8.5955 2.4939 3.7611 43 1 9.1629 -2.2948 3.7701 44 1 9.1079 -1.4026 5.3090 45 1 7.6322 -1.5790 4.3291 46 1 10.8605 2.4864 3.1161 47 1 12.3909 1.7700 2.5576 48 1 10.9156 1.5937 1.5773 49 1 11.2851 -0.5102 5.2845 50 1 12.6069 0.5407 4.7224 51 1 11.0763 1.2575 5.2817 52 1 11.2085 -0.8877 1.5824 53 1 12.6840 -0.7116 2.5626 54 1 11.3623 -1.7625 3.1248 55 1 6.3161 -1.8986 0.7839 56 1 7.3184 -0.8177 -0.2759 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12496546.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:59:04 Heat of formation + Delta-G solvation = -121.553434 kcal Electronic energy + Delta-G solvation = -34405.740029 eV Core-core repulsion = 30019.630302 eV Total energy + Delta-G solvation = -4386.109727 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.00088 -41.00365 -39.21169 -39.08166 -37.11032 -36.78416 -36.48534 -33.00380 -31.88719 -29.96931 -29.27329 -29.01455 -28.51650 -27.79434 -27.36194 -27.03391 -26.14598 -25.12298 -22.97496 -22.28713 -20.47524 -20.33453 -19.14374 -18.56182 -18.35190 -18.26962 -17.23925 -17.09063 -16.79929 -16.26634 -16.09359 -15.97526 -15.87207 -15.75733 -15.21174 -14.98786 -14.92210 -14.74353 -14.71332 -14.58030 -14.39113 -13.98174 -13.86565 -13.67645 -13.53359 -13.47977 -13.33838 -13.14763 -13.14131 -13.01916 -12.89872 -12.87288 -12.78273 -12.43976 -12.33209 -12.20127 -12.12131 -12.02647 -11.73113 -11.65089 -11.59088 -11.48303 -11.26546 -11.09255 -10.36097 -10.29287 -10.23277 -10.02312 -9.84430 -9.31900 -0.29167 0.18339 1.21494 1.26726 1.49822 1.55705 1.64744 1.81137 1.87878 1.96977 2.13697 2.21611 2.49598 2.58823 3.18823 3.30904 3.52103 3.62722 3.74884 3.81848 3.88023 4.06475 4.08872 4.17414 4.17956 4.27172 4.32396 4.33502 4.38005 4.46840 4.51870 4.58910 4.62396 4.64543 4.66121 4.67827 4.77240 4.79928 4.81629 4.86418 4.87470 4.87957 4.90433 4.95448 5.06161 5.08263 5.14942 5.15818 5.24143 5.26443 5.39900 5.47295 5.48890 5.53837 5.54849 5.63894 5.71815 6.26337 6.55095 6.74129 7.01296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.170 3.830 4 C -0.210 4.210 5 C -0.055 4.055 6 C -0.165 4.165 7 C -0.072 4.072 8 O -0.552 6.552 9 Si 0.975 3.025 10 H -0.253 1.253 11 H -0.276 1.276 12 H -0.251 1.251 13 C -0.016 4.016 14 C -0.190 4.190 15 C 0.590 3.410 16 O -0.568 6.568 17 N -0.646 5.646 18 C 0.076 3.924 19 C 0.085 3.915 20 O -0.611 6.611 21 Si 1.320 2.680 22 C -0.515 4.515 23 C -0.524 4.524 24 C -0.382 4.382 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.139 4.139 28 C 0.092 3.908 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.388 0.612 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.065 0.935 52 H 0.058 0.942 53 H 0.046 0.954 54 H 0.058 0.942 55 H 0.078 0.922 56 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 5.192 3.380 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.122 3.878 4 C -0.228 4.228 5 C -0.073 4.073 6 C -0.166 4.166 7 C -0.182 4.182 8 O -0.359 6.359 9 Si 0.799 3.201 10 H -0.176 1.176 11 H -0.201 1.201 12 H -0.175 1.175 13 C -0.034 4.034 14 C -0.194 4.194 15 C 0.382 3.618 16 O -0.448 6.448 17 N -0.383 5.383 18 C -0.046 4.046 19 C 0.027 3.973 20 O -0.568 6.568 21 Si 1.450 2.550 22 C -0.617 4.617 23 C -0.625 4.625 24 C -0.425 4.425 25 C -0.195 4.195 26 C -0.199 4.199 27 C -0.196 4.196 28 C -0.030 4.030 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.237 0.763 36 H 0.170 0.830 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.084 0.916 52 H 0.077 0.923 53 H 0.065 0.935 54 H 0.077 0.923 55 H 0.096 0.904 56 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.747 5.118 3.274 6.322 hybrid contribution -0.169 -0.742 -0.083 0.765 sum -1.915 4.376 3.190 5.744 Atomic orbital electron populations 1.23449 0.76234 1.05572 1.02883 1.86276 1.23511 1.26549 1.86793 1.19331 0.91097 0.85526 0.91858 1.21417 1.01671 0.90861 1.08879 1.21314 0.94175 0.97955 0.93849 1.20299 0.93519 0.96426 1.06340 1.24970 1.04602 0.97646 0.91024 1.86496 1.38687 1.95030 1.15670 0.85329 0.76688 0.76739 0.81309 1.17645 1.20135 1.17472 1.21260 1.01080 0.88893 0.92181 1.19280 0.90900 0.93794 1.15377 1.17771 0.79622 0.88026 0.76337 1.90809 1.71158 1.34162 1.48647 1.49104 1.10334 1.19098 1.59756 1.23998 0.90374 0.93911 0.96359 1.23306 0.79565 0.96253 0.98170 1.85413 1.22213 1.89465 1.59703 0.76194 0.62937 0.64558 0.51331 1.27074 1.07940 1.16853 1.09854 1.27203 1.05367 1.19756 1.10149 1.25938 1.20440 0.98205 0.97883 1.21553 1.01357 0.96257 1.00294 1.21612 1.01119 1.02249 0.94920 1.21562 1.00505 0.97258 1.00276 1.23443 0.85554 0.95203 0.98798 0.91002 0.87294 0.90625 0.82096 0.83553 0.84962 0.76252 0.82983 0.86627 0.87674 0.86522 0.90811 0.90445 0.90308 0.91275 0.90400 0.91272 0.91724 0.93631 0.92147 0.92056 0.93288 0.91567 0.92271 0.93511 0.92341 0.90384 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.98 8.86 -70.31 -0.62 -3.60 16 3 C 0.17 1.10 6.67 22.84 0.15 1.25 16 4 C -0.21 0.03 9.03 22.34 0.20 0.23 16 5 C -0.06 0.13 8.65 22.30 0.19 0.33 16 6 C -0.17 0.34 5.35 -19.90 -0.11 0.24 16 7 C -0.07 0.35 2.79 71.24 0.20 0.55 16 8 O -0.55 1.61 12.83 -148.98 -1.91 -0.30 16 9 Si 0.97 -4.65 25.12 68.60 1.72 -2.93 16 10 H -0.25 1.05 7.11 99.48 0.71 1.76 16 11 H -0.28 0.16 7.11 99.48 0.71 0.87 16 12 H -0.25 1.22 7.04 99.48 0.70 1.92 16 13 C -0.02 -0.01 8.46 22.52 0.19 0.18 16 14 C -0.19 -1.31 5.84 -20.01 -0.12 -1.42 16 15 C 0.59 6.79 7.79 86.70 0.68 7.46 16 16 O -0.57 -11.65 16.33 15.39 0.25 -11.40 16 17 N -0.65 -2.83 3.64 -862.11 -3.14 -5.97 16 18 C 0.08 -0.27 5.96 83.27 0.50 0.23 16 19 C 0.09 -0.27 3.92 31.02 0.12 -0.15 16 20 O -0.61 1.99 8.61 -148.98 -1.28 0.70 16 21 Si 1.32 -6.76 8.24 68.60 0.57 -6.19 16 22 C -0.51 2.94 8.65 113.37 0.98 3.92 16 23 C -0.52 1.63 8.64 113.37 0.98 2.61 16 24 C -0.38 0.97 0.53 -10.79 -0.01 0.97 16 25 C -0.14 0.28 7.85 71.98 0.56 0.84 16 26 C -0.14 0.39 7.85 71.98 0.56 0.96 16 27 C -0.14 0.12 7.85 71.98 0.56 0.68 16 28 C 0.09 0.14 8.45 83.18 0.70 0.84 16 29 H 0.07 -0.28 7.67 -2.39 -0.02 -0.29 16 30 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.08 -0.36 7.65 -2.39 -0.02 -0.38 16 32 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 33 H 0.15 -0.96 4.83 -2.91 -0.01 -0.98 16 34 H 0.13 -1.02 7.96 -2.39 -0.02 -1.04 16 35 H 0.39 -3.29 8.70 -74.06 -0.64 -3.93 16 36 H 0.15 -0.36 5.68 -2.92 -0.02 -0.38 16 37 H 0.12 -0.68 7.93 -2.39 -0.02 -0.70 16 38 H 0.11 -0.75 7.75 -2.39 -0.02 -0.77 16 39 H 0.12 -0.71 6.50 -2.39 -0.02 -0.72 16 40 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 41 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 42 H 0.08 -0.47 7.79 -2.38 -0.02 -0.49 16 43 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 44 H 0.08 -0.28 7.79 -2.39 -0.02 -0.29 16 45 H 0.07 -0.24 7.31 -2.39 -0.02 -0.26 16 46 H 0.06 -0.26 7.80 -2.39 -0.02 -0.28 16 47 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.06 -0.12 7.97 -2.39 -0.02 -0.14 16 49 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 50 H 0.05 -0.06 8.14 -2.38 -0.02 -0.07 16 51 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 52 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 53 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 54 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 55 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 56 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -21.90 442.34 4.03 -17.87 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: 0.97 Total: -9.01 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 7.47 Total: 20.82 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.14 Total: -5.97 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -3.57 Total: -14.59 kcal Atomic # 14 Polarization: -11.41 SS G_CDS: 2.29 Total: -9.12 kcal Total: -21.90 4.03 -17.87 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12496546.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.681 kcal (2) G-P(sol) polarization free energy of solvation -21.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds