Wall clock time and date at job start Sun Mar 7 2021 11:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38503 * 119.84539 * 2 1 4 4 C 1.38100 * 120.38620 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.95545 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47120 * 105.02598 * 5 4 3 7 7 Si 1.86301 * 109.47259 * 345.02315 * 5 4 3 8 8 H 1.48502 * 109.46866 * 299.99688 * 7 5 4 9 9 H 1.48496 * 109.46880 * 59.99846 * 7 5 4 10 10 H 1.48502 * 109.46961 * 179.97438 * 7 5 4 11 11 C 1.38667 * 120.08537 * 0.02562 * 4 3 2 12 12 O 1.35649 * 120.14978 * 179.97438 * 11 4 3 13 13 C 1.40174 * 119.69981 * 359.97438 * 11 4 3 14 14 C 1.47543 * 120.18852 * 179.97438 * 13 11 4 15 15 O 1.21583 * 120.00007 * 24.69721 * 14 13 11 16 16 N 1.34778 * 119.99916 * 204.69552 * 14 13 11 17 17 C 1.47068 * 136.05652 * 5.05178 * 16 14 13 18 18 C 1.53751 * 87.88530 * 152.96775 * 17 16 14 19 19 O 1.42904 * 114.08582 * 139.78584 * 18 17 16 20 20 Si 1.63101 * 114.00404 * 116.56155 * 19 18 17 21 21 C 1.86300 * 109.46654 * 299.99796 * 20 19 18 22 22 C 1.86298 * 109.47167 * 59.99581 * 20 19 18 23 23 C 1.86296 * 109.47143 * 179.97438 * 20 19 18 24 24 C 1.52998 * 109.47396 * 59.99460 * 23 20 19 25 25 C 1.52999 * 109.47057 * 180.02562 * 23 20 19 26 26 C 1.53007 * 109.46763 * 299.99694 * 23 20 19 27 27 C 1.47060 * 136.06000 * 185.43074 * 16 14 13 28 28 C 1.37834 * 119.84988 * 180.25115 * 2 1 3 29 29 H 1.09004 * 109.46797 * 90.00792 * 1 2 3 30 30 H 1.08999 * 109.46928 * 210.00099 * 1 2 3 31 31 H 1.08994 * 109.47372 * 330.00492 * 1 2 3 32 32 H 1.07994 * 119.80805 * 359.97037 * 3 2 1 33 33 H 1.09004 * 109.46921 * 225.01935 * 5 4 3 34 34 H 0.96700 * 114.00721 * 180.02562 * 6 5 4 35 35 H 0.96708 * 114.00364 * 270.02278 * 12 11 4 36 36 H 1.08996 * 113.47095 * 267.70164 * 17 16 14 37 37 H 1.09004 * 113.46828 * 38.13577 * 17 16 14 38 38 H 1.09003 * 114.39342 * 272.67319 * 18 17 16 39 39 H 1.08997 * 109.47747 * 60.00191 * 21 20 19 40 40 H 1.09008 * 109.47125 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47055 * 299.99758 * 21 20 19 42 42 H 1.09004 * 109.47389 * 60.00006 * 22 20 19 43 43 H 1.09001 * 109.47159 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.47161 * 300.00103 * 22 20 19 45 45 H 1.09005 * 109.46542 * 59.99920 * 24 23 20 46 46 H 1.09000 * 109.46823 * 179.97438 * 24 23 20 47 47 H 1.08994 * 109.47110 * 300.00139 * 24 23 20 48 48 H 1.08999 * 109.47307 * 59.99484 * 25 23 20 49 49 H 1.09005 * 109.47078 * 179.97438 * 25 23 20 50 50 H 1.09001 * 109.46575 * 299.99654 * 25 23 20 51 51 H 1.08994 * 109.47385 * 60.00080 * 26 23 20 52 52 H 1.09005 * 109.46986 * 180.02562 * 26 23 20 53 53 H 1.08995 * 109.46991 * 299.99704 * 26 23 20 54 54 H 1.09002 * 113.46239 * 321.86303 * 27 16 14 55 55 H 1.09005 * 113.47020 * 92.29746 * 27 16 14 56 56 H 1.07996 * 120.04911 * 0.04414 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5772 1.2144 0.0005 5 6 4.3174 2.5271 -0.0001 6 8 4.8550 2.7713 1.3012 7 14 3.1445 3.9011 -0.4554 8 1 2.5859 3.6472 -1.8077 9 1 2.0390 3.9565 0.5346 10 1 3.8738 5.1947 -0.4553 11 6 4.2837 0.0211 0.0005 12 8 5.6401 0.0324 0.0005 13 6 3.5897 -1.1968 0.0005 14 6 4.3305 -2.4728 0.0000 15 8 5.4632 -2.5183 0.4395 16 7 3.7515 -3.5879 -0.4877 17 6 2.4876 -3.9155 -1.1644 18 6 3.2115 -5.1042 -1.8177 19 8 2.4266 -6.2961 -1.8914 20 14 2.1102 -6.7892 -3.4136 21 6 1.1717 -5.4563 -4.3155 22 6 3.7121 -7.1301 -4.3015 23 6 1.0860 -8.3445 -3.3623 24 6 -0.2295 -8.0651 -2.6329 25 6 0.7898 -8.8074 -4.7902 26 6 1.8574 -9.4389 -2.6217 27 6 4.1027 -5.0135 -0.5713 28 6 2.1931 -1.1955 -0.0052 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6507 2.1333 -0.0005 33 1 5.1289 2.4863 -0.7267 34 1 5.3454 3.6015 1.3748 35 1 6.0335 0.0360 -0.8829 36 1 1.6934 -4.2139 -0.4801 37 1 2.1670 -3.1556 -1.8771 38 1 3.7216 -4.8633 -2.7504 39 1 1.7712 -4.5465 -4.3456 40 1 0.9598 -5.7860 -5.3327 41 1 0.2345 -5.2569 -3.7960 42 1 4.2613 -7.9099 -3.7738 43 1 3.5007 -7.4592 -5.3189 44 1 4.3117 -6.2203 -4.3315 45 1 -0.7790 -7.2855 -3.1605 46 1 -0.8289 -8.9751 -2.6033 47 1 -0.0180 -7.7357 -1.6157 48 1 1.7272 -9.0065 -5.3095 49 1 0.1909 -9.7177 -4.7602 50 1 0.2405 -8.0278 -5.3182 51 1 2.0689 -9.1094 -1.6045 52 1 1.2584 -10.3491 -2.5921 53 1 2.7946 -9.6379 -3.1414 54 1 5.1583 -5.1890 -0.7787 55 1 3.7343 -5.6014 0.2694 56 1 1.6514 -2.1298 -0.0101 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13422088.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:13:42 Heat of formation + Delta-G solvation = -133.384109 kcal Electronic energy + Delta-G solvation = -34247.570036 eV Core-core repulsion = 29860.947293 eV Total energy + Delta-G solvation = -4386.622744 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.00139 -40.89905 -39.13289 -38.07204 -37.59641 -36.79032 -36.49272 -33.33879 -33.04675 -29.96765 -29.26930 -29.01863 -27.80155 -27.55359 -27.41814 -27.21666 -26.60258 -24.96628 -22.61506 -21.84517 -20.38456 -20.31749 -19.42645 -18.55299 -18.53465 -18.17580 -17.69037 -17.07396 -16.59635 -16.30175 -15.96309 -15.84710 -15.69724 -15.19837 -15.02632 -14.96983 -14.77829 -14.72746 -14.54972 -14.40804 -14.37461 -14.03569 -13.87895 -13.76791 -13.50806 -13.34075 -13.15161 -13.11699 -13.06433 -13.01681 -12.90664 -12.87532 -12.76520 -12.70659 -12.41523 -12.33920 -12.10882 -11.81481 -11.74252 -11.72893 -11.65233 -11.48189 -11.27572 -11.00252 -10.30889 -10.29034 -10.17892 -10.03019 -9.86746 -9.51689 -0.37028 0.03839 1.10746 1.24792 1.44967 1.49505 1.58054 1.80327 1.83925 1.88510 2.13237 2.43481 2.50731 3.08964 3.16408 3.28960 3.36695 3.67167 3.78919 3.87201 4.02985 4.04949 4.14474 4.16658 4.17244 4.19896 4.35885 4.45588 4.49461 4.51513 4.58542 4.60241 4.63733 4.69139 4.76941 4.81139 4.82082 4.85715 4.86481 4.86991 4.87515 4.89923 4.96985 5.05450 5.14187 5.15201 5.16711 5.20113 5.25774 5.37484 5.39438 5.46554 5.48125 5.53884 5.63652 5.64510 5.71568 6.49889 6.70013 6.80805 6.95657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.090 4.090 4 C -0.121 4.121 5 C -0.085 4.085 6 O -0.564 6.564 7 Si 0.985 3.015 8 H -0.246 1.246 9 H -0.260 1.260 10 H -0.256 1.256 11 C 0.166 3.834 12 O -0.488 6.488 13 C -0.174 4.174 14 C 0.588 3.412 15 O -0.564 6.564 16 N -0.644 5.644 17 C 0.075 3.925 18 C 0.085 3.915 19 O -0.611 6.611 20 Si 1.321 2.679 21 C -0.514 4.514 22 C -0.525 4.525 23 C -0.384 4.384 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.139 4.139 27 C 0.091 3.909 28 C -0.064 4.064 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.402 0.598 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.045 0.955 53 H 0.057 0.943 54 H 0.078 0.922 55 H 0.103 0.897 56 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 1.481 -6.551 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.108 4.108 4 C -0.121 4.121 5 C -0.194 4.194 6 O -0.372 6.372 7 Si 0.807 3.193 8 H -0.170 1.170 9 H -0.184 1.184 10 H -0.180 1.180 11 C 0.119 3.881 12 O -0.300 6.300 13 C -0.178 4.178 14 C 0.380 3.620 15 O -0.443 6.443 16 N -0.381 5.381 17 C -0.047 4.047 18 C 0.027 3.973 19 O -0.568 6.568 20 Si 1.451 2.549 21 C -0.617 4.617 22 C -0.626 4.626 23 C -0.426 4.426 24 C -0.194 4.194 25 C -0.199 4.199 26 C -0.196 4.196 27 C -0.031 4.031 28 C -0.083 4.083 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.245 0.755 35 H 0.261 0.739 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.064 0.936 53 H 0.076 0.924 54 H 0.097 0.903 55 H 0.121 0.879 56 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.694 1.637 -5.466 8.796 hybrid contribution 1.149 -0.272 -0.619 1.333 sum -5.545 1.365 -6.084 8.344 Atomic orbital electron populations 1.20927 0.87849 1.04341 1.04219 1.20122 0.98251 0.91564 0.99490 1.21379 0.92595 0.99663 0.97157 1.19856 0.94043 0.93972 1.04254 1.24867 1.04326 1.01002 0.89182 1.86520 1.74922 1.46544 1.29242 0.85223 0.78035 0.75922 0.80098 1.16975 1.18437 1.17957 1.18428 0.83527 0.90489 0.95610 1.84828 1.15131 1.96057 1.34025 1.20285 0.95090 0.92046 1.10335 1.17755 0.85009 0.82648 0.76597 1.90838 1.19850 1.85672 1.47968 1.49116 1.22768 1.07075 1.59124 1.24032 0.88010 0.96410 0.96238 1.23311 0.92011 0.83842 0.98114 1.85417 1.69497 1.42304 1.59603 0.76163 0.63787 0.63643 0.51285 1.27066 1.10270 1.14448 1.09892 1.27217 1.20011 1.05335 1.09996 1.25963 1.04971 1.13822 0.97844 1.21552 0.95993 1.01539 1.00356 1.21613 1.01844 1.01533 0.94927 1.21564 0.99732 0.98071 1.00254 1.23465 1.01169 0.79671 0.98822 1.21513 0.91080 0.99790 0.95894 0.88900 0.89840 0.90638 0.83739 0.89587 0.75454 0.73873 0.86457 0.87366 0.86365 0.90696 0.90497 0.90250 0.91338 0.90443 0.91174 0.91655 0.93709 0.92094 0.92088 0.93346 0.91524 0.92259 0.93572 0.92376 0.90305 0.87869 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.83 10.00 71.24 0.71 1.54 16 2 C -0.09 0.10 5.87 -19.90 -0.12 -0.02 16 3 C -0.09 -0.12 8.30 22.30 0.19 0.07 16 4 C -0.12 -0.57 5.30 -19.80 -0.10 -0.67 16 5 C -0.09 -0.10 2.37 71.23 0.17 0.07 16 6 O -0.56 -2.56 12.86 -148.98 -1.92 -4.48 16 7 Si 0.99 -2.29 25.49 68.60 1.75 -0.54 16 8 H -0.25 0.65 7.11 99.48 0.71 1.36 16 9 H -0.26 0.09 6.73 99.48 0.67 0.75 16 10 H -0.26 0.54 7.11 99.48 0.71 1.24 16 11 C 0.17 1.38 6.66 22.84 0.15 1.53 16 12 O -0.49 -4.91 11.21 -70.33 -0.79 -5.70 16 13 C -0.17 -1.18 5.84 -20.01 -0.12 -1.30 16 14 C 0.59 5.96 7.78 86.70 0.67 6.63 16 15 O -0.56 -11.00 16.35 15.34 0.25 -10.75 16 16 N -0.64 -1.60 3.64 -862.29 -3.14 -4.74 16 17 C 0.08 -0.44 5.96 83.26 0.50 0.06 16 18 C 0.09 -0.44 3.92 31.01 0.12 -0.31 16 19 O -0.61 2.94 8.61 -148.98 -1.28 1.66 16 20 Si 1.32 -8.52 8.24 68.60 0.57 -7.95 16 21 C -0.51 3.73 8.65 113.37 0.98 4.71 16 22 C -0.52 2.23 8.64 113.37 0.98 3.21 16 23 C -0.38 1.36 0.53 -10.79 -0.01 1.35 16 24 C -0.14 0.44 7.85 71.98 0.56 1.00 16 25 C -0.14 0.51 7.85 71.98 0.56 1.07 16 26 C -0.14 0.23 7.85 71.98 0.56 0.79 16 27 C 0.09 0.00 8.45 83.17 0.70 0.70 16 28 C -0.06 -0.02 8.49 22.52 0.19 0.17 16 29 H 0.09 -0.92 8.14 -2.38 -0.02 -0.94 16 30 H 0.08 -0.74 8.08 -2.39 -0.02 -0.76 16 31 H 0.07 -0.55 8.08 -2.39 -0.02 -0.57 16 32 H 0.15 -0.30 4.86 -2.91 -0.01 -0.31 16 33 H 0.09 -0.20 7.83 -2.39 -0.02 -0.22 16 34 H 0.40 -1.93 8.74 -74.06 -0.65 -2.58 16 35 H 0.40 0.40 9.06 -74.05 -0.67 -0.27 16 36 H 0.12 -1.02 7.92 -2.39 -0.02 -1.03 16 37 H 0.11 -1.05 7.75 -2.39 -0.02 -1.07 16 38 H 0.12 -0.97 6.50 -2.39 -0.02 -0.98 16 39 H 0.07 -0.63 7.96 -2.39 -0.02 -0.65 16 40 H 0.08 -0.53 7.79 -2.38 -0.02 -0.55 16 41 H 0.08 -0.61 7.79 -2.39 -0.02 -0.63 16 42 H 0.07 -0.19 7.79 -2.38 -0.02 -0.21 16 43 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 44 H 0.07 -0.34 7.31 -2.38 -0.02 -0.36 16 45 H 0.06 -0.35 7.80 -2.38 -0.02 -0.36 16 46 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 48 H 0.06 -0.28 7.79 -2.39 -0.02 -0.29 16 49 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 50 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 51 H 0.06 -0.09 7.96 -2.39 -0.02 -0.10 16 52 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 53 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 54 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 55 H 0.10 -0.09 8.14 -2.38 -0.02 -0.10 16 56 H 0.16 -0.80 5.67 -2.91 -0.02 -0.81 16 Total: 0.00 -25.08 444.53 2.44 -22.64 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: 0.28 Total: -10.74 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.72 Total: 20.61 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -3.14 Total: -4.74 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -3.73 Total: -19.27 kcal Atomic # 14 Polarization: -10.81 SS G_CDS: 2.31 Total: -8.49 kcal Total: -25.08 2.44 -22.64 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13422088.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.742 kcal (2) G-P(sol) polarization free energy of solvation -25.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds