Wall clock time and date at job start Sun Mar 7 2021 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46751 * 2 1 4 4 C 1.53010 * 109.46902 * 240.00664 * 2 1 3 5 5 Si 1.86290 * 109.47679 * 120.00364 * 2 1 3 6 6 C 1.86304 * 109.47173 * 300.00348 * 5 2 1 7 7 C 1.86294 * 109.47490 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46986 * 60.00054 * 5 2 1 9 9 C 1.42900 * 114.00137 * 180.02562 * 8 5 2 10 10 C 1.53495 * 114.20732 * 210.00088 * 9 8 5 11 11 N 1.47066 * 87.98658 * 220.34148 * 10 9 8 12 12 C 1.34780 * 136.06263 * 206.86221 * 11 10 9 13 13 O 1.21614 * 119.99388 * 359.97438 * 12 11 10 14 14 C 1.47371 * 120.00227 * 180.02562 * 12 11 10 15 15 C 1.36416 * 127.19265 * 0.02562 * 14 12 11 16 16 O 1.33653 * 108.39828 * 180.02562 * 15 14 12 17 17 C 1.34220 * 110.90752 * 0.02562 * 16 15 14 18 18 C 1.50706 * 125.43835 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.46744 * 244.97784 * 18 17 16 20 20 Si 1.86299 * 109.46979 * 4.97380 * 18 17 16 21 21 H 1.48493 * 109.47328 * 300.00067 * 20 18 17 22 22 H 1.48498 * 109.47105 * 60.00285 * 20 18 17 23 23 H 1.48498 * 109.46845 * 179.97438 * 20 18 17 24 24 C 1.34179 * 109.12452 * 359.70564 * 17 16 15 25 25 C 1.47067 * 87.88528 * 27.11900 * 11 10 9 26 26 H 1.08996 * 109.47031 * 299.99058 * 1 2 3 27 27 H 1.08998 * 109.47786 * 59.99839 * 1 2 3 28 28 H 1.09004 * 109.46780 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47155 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47565 * 300.00424 * 3 2 1 31 31 H 1.09004 * 109.47181 * 60.00694 * 3 2 1 32 32 H 1.08997 * 109.46720 * 299.99679 * 4 2 1 33 33 H 1.09004 * 109.46905 * 59.99270 * 4 2 1 34 34 H 1.08996 * 109.47019 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.46879 * 180.02562 * 6 5 2 36 36 H 1.08997 * 109.46545 * 299.99604 * 6 5 2 37 37 H 1.08996 * 109.47220 * 59.99864 * 6 5 2 38 38 H 1.09001 * 109.47449 * 300.00174 * 7 5 2 39 39 H 1.09004 * 109.46720 * 59.99819 * 7 5 2 40 40 H 1.08998 * 109.47597 * 179.97438 * 7 5 2 41 41 H 1.09006 * 113.41188 * 343.19941 * 9 8 5 42 42 H 1.09005 * 113.46950 * 105.56714 * 10 9 8 43 43 H 1.08994 * 113.52293 * 335.13199 * 10 9 8 44 44 H 1.07997 * 125.80406 * 0.02562 * 15 14 12 45 45 H 1.08992 * 109.46954 * 124.97741 * 18 17 16 46 46 H 0.96706 * 113.99682 * 180.02562 * 19 18 17 47 47 H 1.07994 * 127.02379 * 180.26811 * 24 17 16 48 48 H 1.09007 * 113.46858 * 87.65629 * 25 11 10 49 49 H 1.08993 * 113.47208 * 218.09965 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 14 2.1511 -0.8782 1.5209 6 6 1.5301 -0.0002 3.0422 7 6 4.0141 -0.8789 1.5205 8 8 1.6075 -2.4160 1.5209 9 6 2.0288 -3.1815 2.6516 10 6 2.1846 -4.6829 2.3726 11 7 1.5814 -4.9373 3.6895 12 6 1.6396 -5.9200 4.6102 13 8 2.3354 -6.8977 4.4126 14 6 0.8594 -5.8101 5.8556 15 6 0.0361 -4.7872 6.2253 16 8 -0.4801 -5.0736 7.4245 17 6 -0.0282 -6.2561 7.8704 18 6 -0.3990 -6.8941 9.1845 19 8 0.7594 -6.9778 10.0170 20 14 -1.6988 -5.8621 10.0308 21 1 -1.1657 -4.4981 10.2759 22 1 -2.9026 -5.7751 9.1657 23 1 -2.0647 -6.4912 11.3253 24 6 0.8020 -6.7823 6.9570 25 6 0.8815 -3.6507 3.5570 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6765 -0.2072 -2.1393 34 1 3.1299 -0.7208 -1.2497 35 1 1.8940 -0.5139 3.9321 36 1 1.8935 1.0274 3.0422 37 1 0.4402 -0.0003 3.0423 38 1 4.3771 -1.3929 0.6305 39 1 4.3777 0.1487 1.5203 40 1 4.3775 -1.3924 2.4106 41 1 2.8677 -2.7371 3.1873 42 1 3.2233 -5.0057 2.3013 43 1 1.5755 -5.0362 1.5406 44 1 -0.1646 -3.8973 5.6474 45 1 -0.7903 -7.8954 9.0045 46 1 0.5945 -7.3796 10.8810 47 1 1.3235 -7.7260 7.0193 48 1 -0.0752 -3.7281 3.0403 49 1 0.8121 -3.0958 4.4925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13456056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:23:17 Heat of formation + Delta-G solvation = -96.778157 kcal Electronic energy + Delta-G solvation = -28055.025072 eV Core-core repulsion = 24109.291060 eV Total energy + Delta-G solvation = -3945.734012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.79042 -41.52257 -39.26582 -37.90803 -36.79195 -36.53514 -34.09173 -32.25460 -30.04741 -29.27401 -29.01810 -27.80440 -27.47244 -27.24806 -26.37106 -24.84463 -22.56855 -21.95527 -20.35698 -20.17497 -18.83050 -18.67003 -18.33143 -17.79310 -17.22040 -16.88366 -16.27172 -16.05598 -15.98721 -15.84643 -15.16062 -15.11567 -14.78104 -14.73780 -14.64577 -14.45959 -14.23438 -13.96647 -13.91401 -13.60228 -13.52587 -13.33615 -13.14752 -13.09409 -12.90694 -12.88314 -12.80990 -12.71990 -12.34080 -12.14896 -12.03647 -11.74782 -11.65828 -11.52322 -11.29622 -11.27424 -11.01211 -10.47739 -10.29385 -10.03485 -9.96141 -9.79043 0.16092 0.76216 1.05957 1.20964 1.37534 1.55631 1.70887 1.78819 1.80248 1.95790 2.13145 2.16426 2.49634 3.15423 3.22733 3.39269 3.65159 3.71484 3.81920 4.02000 4.12241 4.16443 4.17122 4.27030 4.37707 4.47809 4.49250 4.52195 4.57844 4.63586 4.71512 4.77344 4.81266 4.85071 4.86197 4.87509 4.87892 4.90303 5.05405 5.12157 5.14117 5.15113 5.25716 5.39369 5.46559 5.47764 5.53466 5.64106 5.72097 5.79412 6.46646 6.74871 6.92214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.323 2.677 6 C -0.515 4.515 7 C -0.526 4.526 8 O -0.610 6.610 9 C 0.085 3.915 10 C 0.092 3.908 11 N -0.645 5.645 12 C 0.618 3.382 13 O -0.584 6.584 14 C -0.259 4.259 15 C 0.054 3.946 16 O -0.174 6.174 17 C -0.018 4.018 18 C -0.049 4.049 19 O -0.562 6.562 20 Si 0.996 3.004 21 H -0.275 1.275 22 H -0.260 1.260 23 H -0.235 1.235 24 C -0.145 4.145 25 C 0.068 3.932 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.255 0.745 45 H 0.121 0.879 46 H 0.409 0.591 47 H 0.154 0.846 48 H 0.123 0.877 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 4.677 2.116 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.427 4.427 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.453 2.547 6 C -0.618 4.618 7 C -0.627 4.627 8 O -0.567 6.567 9 C 0.027 3.973 10 C -0.030 4.030 11 N -0.381 5.381 12 C 0.410 3.590 13 O -0.465 6.465 14 C -0.264 4.264 15 C -0.016 4.016 16 O -0.070 6.070 17 C -0.066 4.066 18 C -0.157 4.157 19 O -0.373 6.373 20 Si 0.817 3.183 21 H -0.200 1.200 22 H -0.184 1.184 23 H -0.158 1.158 24 C -0.165 4.165 25 C -0.053 4.053 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.270 0.730 45 H 0.139 0.861 46 H 0.261 0.739 47 H 0.171 0.829 48 H 0.141 0.859 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.394 4.739 2.079 6.788 hybrid contribution 0.820 -0.347 -0.307 0.942 sum -3.574 4.392 1.771 5.933 Atomic orbital electron populations 1.21555 0.93929 1.02062 1.01912 1.25978 1.00669 1.02839 1.13171 1.21612 1.01144 0.94935 1.02246 1.21566 1.00896 1.00206 0.96961 0.76122 0.61822 0.52377 0.64337 1.27075 1.07525 1.09728 1.17488 1.27232 1.26021 1.04926 1.04486 1.85422 1.78615 1.46645 1.46036 1.23245 0.97031 0.90788 0.86247 1.23477 1.00464 0.93858 0.85184 1.49026 1.48497 1.21207 1.19391 1.16848 0.80187 0.80160 0.81785 1.90792 1.43916 1.32229 1.79589 1.21369 1.07441 0.99653 0.97899 1.25448 0.92555 0.99434 0.84124 1.83707 1.57755 1.34081 1.31477 1.21610 1.01293 0.85777 0.97877 1.24063 0.96851 1.05979 0.88843 1.86435 1.32912 1.85923 1.32049 0.84994 0.75380 0.78140 0.79807 1.19952 1.18371 1.15804 1.22561 1.00501 1.01231 0.92210 1.24112 0.98954 0.80861 1.01386 0.91645 0.93772 0.92046 0.92102 0.93393 0.91531 0.92202 0.93623 0.92378 0.90508 0.90556 0.90152 0.91341 0.90510 0.91145 0.86195 0.90229 0.87722 0.72963 0.86110 0.73879 0.82872 0.85916 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.46 7.85 71.98 0.56 1.02 16 2 C -0.38 1.41 0.53 -10.79 -0.01 1.41 16 3 C -0.14 0.51 7.85 71.98 0.56 1.07 16 4 C -0.14 0.24 7.85 71.99 0.56 0.81 16 5 Si 1.32 -9.03 8.24 68.60 0.57 -8.47 16 6 C -0.52 3.98 8.65 113.37 0.98 4.96 16 7 C -0.53 2.30 8.64 113.37 0.98 3.28 16 8 O -0.61 3.36 8.61 -148.98 -1.28 2.08 16 9 C 0.09 -0.51 3.91 30.93 0.12 -0.39 16 10 C 0.09 -0.07 8.46 83.18 0.70 0.63 16 11 N -0.65 -1.12 3.69 -862.86 -3.18 -4.30 16 12 C 0.62 6.08 8.06 86.65 0.70 6.78 16 13 O -0.58 -11.38 17.76 -4.08 -0.07 -11.45 16 14 C -0.26 -1.63 6.31 -18.99 -0.12 -1.75 16 15 C 0.05 -0.05 11.29 67.39 0.76 0.71 16 16 O -0.17 -0.42 8.90 4.41 0.04 -0.38 16 17 C -0.02 -0.07 6.22 24.76 0.15 0.08 16 18 C -0.05 0.09 2.96 71.24 0.21 0.30 16 19 O -0.56 0.46 12.86 -148.98 -1.92 -1.46 16 20 Si 1.00 -2.81 27.38 68.60 1.88 -0.93 16 21 H -0.27 -0.55 7.11 99.48 0.71 0.16 16 22 H -0.26 0.21 7.11 99.48 0.71 0.91 16 23 H -0.24 1.15 7.11 99.48 0.71 1.86 16 24 C -0.15 -1.13 10.90 23.65 0.26 -0.87 16 25 C 0.07 -0.51 6.99 83.18 0.58 0.07 16 26 H 0.06 -0.35 7.79 -2.39 -0.02 -0.37 16 27 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 -0.22 7.97 -2.39 -0.02 -0.24 16 29 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 30 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.07 -0.37 7.79 -2.38 -0.02 -0.39 16 32 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.04 -0.01 8.14 -2.38 -0.02 -0.03 16 34 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 35 H 0.08 -0.71 7.96 -2.38 -0.02 -0.72 16 36 H 0.08 -0.54 7.79 -2.39 -0.02 -0.56 16 37 H 0.08 -0.67 7.79 -2.39 -0.02 -0.69 16 38 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 40 H 0.07 -0.35 7.31 -2.39 -0.02 -0.37 16 41 H 0.12 -1.09 6.50 -2.38 -0.02 -1.10 16 42 H 0.08 0.06 8.14 -2.38 -0.02 0.04 16 43 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.25 -2.72 5.21 -2.91 -0.02 -2.74 16 45 H 0.12 -0.84 7.96 -2.39 -0.02 -0.86 16 46 H 0.41 -4.54 8.74 -74.05 -0.65 -5.19 16 47 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.12 -1.26 8.14 -2.38 -0.02 -1.28 16 49 H 0.11 -1.49 6.21 -2.39 -0.01 -1.51 16 Total: 0.00 -24.17 400.29 4.09 -20.08 By element: Atomic # 1 Polarization: -14.33 SS G_CDS: 1.05 Total: -13.28 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 7.02 Total: 18.11 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -3.18 Total: -4.30 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -3.23 Total: -11.20 kcal Atomic # 14 Polarization: -11.84 SS G_CDS: 2.44 Total: -9.40 kcal Total: -24.17 4.09 -20.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13456056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.700 kcal (2) G-P(sol) polarization free energy of solvation -24.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds